BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339633
Length=1998
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 2036 0.0
AT1G74410.1 | Symbols: | RING/U-box superfamily protein | chr1... 1085 0.0
> AT1G74400.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr1:27963953-27965341 FORWARD LENGTH=1389
Length=1389
Score = 2036 bits (1102), Expect = 0.0
Identities = 1267/1349 (94%), Gaps = 2/1349 (0%)
Strand=Plus/Plus
Query 1 ATGAGGTTTATCTTGCGTCATTTGAATTCACTTGGAGTGATCAACAAATTTGATTCCTTT 60
||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGGTTTATCTTGCGTCATCTGCATTCACTTGGAGTGATCAACAAATTTGATTCCTTT 60
Query 61 CTTCTACATTATCATACCAACTCGCTTAAATCTAACCACACTTTGAAGCATTATCTTGAA 120
|||||||||| ||| ||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 61 CTTCTACATTTTCACACCAAATCGCTTAAATCTAACCACACTTTGAAGCAATATCTTGAA 120
Query 121 TCTGGGGAGCCAATCAAAGCTCTTTTGA-ATTTCCAGCATCGATTCAGAGAAAGTCCCAG 179
|||||||| ||||||||||||||||| | |||||| ||| ||||||||| ||||||| ||
Sbjct 121 TCTGGGGAACCAATCAAAGCTCTTTT-AGATTTCCGGCACCGATTCAGACAAAGTCCTAG 179
Query 180 TTTTGTTGACAGTTTCTCTGTGTTGTTTGCCATTAAAGCTTCGTCAGCTCAGAAAGCTTC 239
||||||||||||||| ||||| |||||||||||||||| |||||||||||||||||||||
Sbjct 180 TTTTGTTGACAGTTTTTCTGTTTTGTTTGCCATTAAAGTTTCGTCAGCTCAGAAAGCTTC 239
Query 240 CTCATTTGATGGTAGACAGATCCACGCTCTTGTAAGGAAGCTAGGGTTCAATGCCGTTAT 299
|||| ||||||||||||||||||||||||||||||| || ||||| ||||||||||||||
Sbjct 240 CTCACTTGATGGTAGACAGATCCACGCTCTTGTAAGAAAACTAGGTTTCAATGCCGTTAT 299
Query 300 TCAAATTCAAACATCTCTAGTGGGGTTTTACTCCTCTGCGGGTGATCTCGATGATGCACG 359
|||||||||||||||| ||||||| || ||||| || | ||||||| ||||| |||||||
Sbjct 300 TCAAATTCAAACATCTTTAGTGGGATTCTACTCTTCCGTGGGTGATGTCGATTATGCACG 359
Query 360 CCAAGTGTTCGATGAAACGCCTGATAAACAGAACGTTGTCTTGTGGACAGCGATGATTTC 419
|||||||||||| ||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 360 CCAAGTGTTCGACGAAACGCCTGAGAAACAGAACATTGTCTTGTGGACAGCGATGATTTC 419
Query 420 AGCTTACACTGAGAATGAGAACTCTGTGGAAGCTATTGAGCTGTTTAACCGAATGGAAGC 479
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 420 AGCTTACACTGAGAATGAGAACTCTGTGGAAGCTATTGAGCTGTTTAAACGAATGGAAGC 479
Query 480 GGAGAAGATCGAACTTGATGAAGTGATTATGACTGTGGCTTTATCGGCTTGTGCTGATCT 539
||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||||||
Sbjct 480 GGAAAAGATCGAACTTGATGGAGTGATTGTGACTGTGGCTTTATCAGCTTGTGCTGATCT 539
Query 540 CGGGGCGGTGCAGATGGGAGAACAGATTTATTCGCGGAGCATCAGGAGGAAACGAAGATT 599
|||||||||||||||||||||| ||||||||||||| || |||| ||| |||||||||||
Sbjct 540 CGGGGCGGTGCAGATGGGAGAAGAGATTTATTCGCGTAGTATCAAGAGAAAACGAAGATT 599
Query 600 GGCTATGGATTTAACTTTGAGAAACTCACTTCTTAACATGTACGTGAAATCTGGGGAAAT 659
|||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||
Sbjct 600 GGCTATGGATTTAACTCTGAGAAATTCACTTCTTAACATGTACGTGAAATCTGGGGAAAC 659
Query 660 TGAGAAAGCTAGGAAATTGTTTGATGAAACTATGAGAAAAGATGTGACTACTTACACATC 719
|||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 660 TGAGAAAGCTAGGAAACTCTTTGATGAAAGTATGAGAAAAGATGTGACTACTTACACATC 719
Query 720 TATGATCTTCGGGTATGCTTTAAACGGTGAAGCTCAAGAATCTTTAGAACTCTTCAAGAA 779
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 720 TATGATCTTCGGGTATGCTTTAAACGGTCAAGCTCAAGAATCTTTAGAACTCTTCAAGAA 779
Query 780 AATGAAGATGATTGATCAGAGCCAAGATACTGTAATTACTCCAAATGATGTGACTTTCAT 839
|||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 780 AATGAAGACGATTGATCAGAGCCAAGATACTGTCATTACTCCAAATGATGTGACTTTCAT 839
Query 840 CGGCGTCTTGATGGCTTGTAGTCACAGTGGATTAGTAGAAGAAGGGAAACAATATTTCAA 899
|||||||||||||||||||||||||||||| |||||||||||||| |||| | |||||||
Sbjct 840 CGGCGTCTTGATGGCTTGTAGTCACAGTGGCTTAGTAGAAGAAGGAAAACGACATTTCAA 899
Query 900 GAGCATGATTGTGGATTACAATCTGAAACCTAGAGACGCTCATTTCGGATGTATGGTCGA 959
|||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 900 GAGCATGATTATGGATTACAATCTGAAACCTAGAGAAGCTCATTTCGGATGTATGGTGGA 959
Query 960 TTTGTTTTGTCGTTCAGGTCATTTGAAGGATGCTCACGAGTTCATCAAACAAATGCCGAT 1019
|||||||||||| |||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 960 TTTGTTTTGTCGGTCAGGTCATTTGAAAGATGCTCACGAGTTCATCAATCAGATGCCGAT 1019
Query 1020 CAAGCCAAACGCTGTGATATGGAGAACACTGCTTGGCGCTTGCAGTCTTCACGGGAATGT 1079
||||||||| | |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1020 AAAGCCAAACACAGTGATATGGAGAACACTGCTAGGCGCTTGCAGTCTTCACGGGAATGT 1079
Query 1080 TGAGCTAGGAGAGGAAGTTCAGAAACGGATCTTTAAGTTAGAGCGTGATCATGTCGGAGA 1139
|||||| ||||| |||||||||| |||||||||| ||||||| |||||||||||||||||
Sbjct 1080 TGAGCTCGGAGAAGAAGTTCAGAGACGGATCTTTGAGTTAGATCGTGATCATGTCGGAGA 1139
Query 1140 TTATGTTGCGTTGTCGAATATCTACGCTTCAAAAGGAATGTGGGATGAGAAATGGAAGAT 1199
||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1140 TTATGTTGCGTTGTCAAATATCTACGCTTCAAAAGGAATGTGGGATGAGAAATCAAAGAT 1199
Query 1200 GAGGGATCGTGTGAGGAAGAGAAGAGTGCCCGGTAAAAGCTGGATTGAACTCGGAAGCAT 1259
||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||
Sbjct 1200 GAGGGATCGTGTGAGGAAGAGAAGAATGCCTGGTAAAAGCTGGATTGAACTCGGAAGCAT 1259
Query 1260 TATCACTGAGTTTGTCTCAGGACATGATGATAATGACGAGCAGCTGATGATGGGAGAGAT 1319
||||| ||||||||||||||||| |||| |||| || |||||||||||||||||||||||
Sbjct 1260 TATCAATGAGTTTGTCTCAGGACCTGATAATAACGATGAGCAGCTGATGATGGGAGAGAT 1319
Query 1320 TAGTGTGGTTTTGAGGTGTTTAGTTTCTT 1348
||||| ||||||||| |||||||||||||
Sbjct 1320 TAGTGAGGTTTTGAGATGTTTAGTTTCTT 1348
> AT1G74410.1 | Symbols: | RING/U-box superfamily protein | chr1:27965551-27967926
FORWARD LENGTH=1089
Length=1089
Score = 1085 bits (587), Expect = 0.0
Identities = 630/651 (97%), Gaps = 2/651 (0%)
Strand=Plus/Plus
Query 1349 CCGTGGAGGCGGAACGAAA-CGCCGACTCAACGATCGACACAGTTTCTCGTTTGATCGCC 1407
||||||||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct 195 CCGTGGAGGCGGAAC-AAATCGCCGACTCAACGATCGACACTGTTTCTCGTTTGATCGCC 253
Query 1408 GGCGCTTTCTCCGGCGCACTTACTGGAATTTTCGCTATGGCTGGAGCTTTCACTGGAGCT 1467
|||| |||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 254 GGCGTTTTCTCCGGCGCACTTACTGGAATCTTCGCTATGGCTGGAGCTTTTACTGGAGCT 313
Query 1468 GTAACTGGTGCGGTGGCAGGAAGAGCTGCTCAGTATGGAGTTCTCCGTGGGGCTGCACTT 1527
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 314 GTAACTGGTGCGGTGGCAGGAAGAGCTGCACAGTATGGAGTTCTCCGTGGGGCTGCACTT 373
Query 1528 GGCGCTGTTGCTGGAGCTATCCTCTCTGTTGAAGTGTTGGAGGCTTCTCGTGCGTACTGG 1587
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 374 GGCGCTGTTGCTGGAGCTATCCTCTCTGTTGAAGTGTTGGAGGCTTCTCGTGCGTATTGG 433
Query 1588 TATTTAGAGCTGTCAGGATCAAGGGGTCCATCATCTATGGCAGATTTTGTAGAGCAACTG 1647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 434 TATTTAGAGCTGTCAGGATCAAGGGGTCCATCATCTATGGCAGATTTTGTAGAGCAACTG 493
Query 1648 TTTCGTGGGAGACTGGTAGATGAACAACTTATGTCAACAATGATAAATTCACACCATTGG 1707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 494 TTTCGTGGGAGACTGGTAGATGAACAACTTATGTCAACAATGATAAATTCACACCATTGG 553
Query 1708 CAGTTAAGGATTTCCGATGTAAGTTATGAAGAGCGGGATGATGTTTATGGTGAATTGGAA 1767
|||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||
Sbjct 554 CAGTTAAGGATTTCCGATGTAAGTTATGAAGAGCGGGAGGATGTTTATGGTGAACTGGAA 613
Query 1768 GCTAGAGGCTTGTCGGGTGACTCTTTAAGGAAACTACCATGCTTTATCATGTCAAGTGAA 1827
||||||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 614 GCTAGAGGCTTATCGGGTGACTCTTTAAGGAAACTACCATGCTATATAATGTCAAGTGAA 673
Query 1828 ATGGTCAAAAGGCAGGTCACTCACTGCACAATTTGTCTGCAGGATATCAAAACAGGGGAA 1887
||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 674 ATGGTCAGGAGGCAGGTCACTCACTGCACAATTTGTCTGCAGGACATCAAAACAGGGGAA 733
Query 1888 ATCACACGAAGCTTACCGAGATGTGATCATACCTTTCATCTGGTTTGTGTTGATAAATGG 1947
||||||||||||||||||| |||||||||||| ||||||||||| |||||||||||||||
Sbjct 734 ATCACACGAAGCTTACCGAAATGTGATCATACGTTTCATCTGGTATGTGTTGATAAATGG 793
Query 1948 CTCATCAGACACGGGTCGTGCCCCATTTGCAGACAGGCCGTTAAAGATTAA 1998
||||||||||||||||| |||||||||||||||||||| ||||||||||||
Sbjct 794 CTCATCAGACACGGGTCATGCCCCATTTGCAGACAGGCAGTTAAAGATTAA 844
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98995474740
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5