BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339639
Length=897
Score E
Sequences producing significant alignments: (Bits) Value
AT1G74480.1 | Symbols: | RWP-RK domain-containing protein | ch... 1391 0.0
> AT1G74480.1 | Symbols: | RWP-RK domain-containing protein |
chr1:27993032-27994178 REVERSE LENGTH=897
Length=897
Score = 1391 bits (753), Expect = 0.0
Identities = 853/901 (95%), Gaps = 8/901 (1%)
Strand=Plus/Plus
Query 1 ATGGCTGATCACAAAACCAAAGAAGAGAAGCCATTCTCATTCCTAGCTCATTCACCTTCC 60
||||||||||||| |||||||||| ||||| |||||||||||||||||||||| || |||
Sbjct 1 ATGGCTGATCACACAACCAAAGAACAGAAGTCATTCTCATTCCTAGCTCATTCTCCATCC 60
Query 61 TTTGATCACAGCTCCTTAAGTTATCCTTTATTTGACTGGGAAGAAGATCTTCTTGCTCTC 120
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 61 TTTGATCACAGCTCCTTAAGTTATCCTTTATTCGACTGGGAAGAAGATCTTCTTGCTCTC 120
Query 121 CAAGAAAACTCTGCCTCTCAAGGTTTTCCTTTGACTACAACTTCTCTGTCTTTACCTGAT 180
||||||||||||| |||||||| |||||||| ||||||||||||||| |||||||||||
Sbjct 121 CAAGAAAACTCTGGCTCTCAAGCATTTCCTTTTACTACAACTTCTCTGCCTTTACCTGAT 180
Query 181 CTTGAACCCTTGTCTGAAGATGTACTCAATTCATACAGCTCTGTATCATGGAACGAAACA 240
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 CTTGAACCCTTGTCTGAAGATGTACTCAATTCATACAGCTCTGCGTCATGGAACGAAACA 240
Query 241 GAGCAAAACAGAGGAGATGGTGCTTCATCGGAGAAGAAGATGGAAAATGGAACAGTGAAA 300
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct 241 GAGCAAAACAGAGGAGATGGCGCTTCATCGGAGAAGAAGAGGGAAAATGGAACAGTGAAA 300
Query 301 GAGACGACTAAGAAGAGGAAAATCAATGAGAGACACAGAGAACATAGCGTGAGAATCATC 360
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GAGACAACTAAGAAGAGGAAAATCAATGAGAGACACAGAGAACATAGCGTGAGAATCATC 360
Query 361 AGCGATATTACTACCTACACAACTAGTTCAGCATC-AAC-AGCATTATCGAAAG-AAACT 417
|||||||||||||||||||||||||||||||| || ||| | |||| || |||| |||||
Sbjct 361 AGCGATATTACTACCTACACAACTAGTTCAGC-TCCAACGA-CATTGTC-AAAGGAAACT 417
Query 418 GTCTCTCGCTACTTCTACATGCCCATAACTCAGGCTGCAATGGAACTTAACGTTGGTTTA 477
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 418 GTCTCTCGCTACTTCTACATGCCCATAACTCAGGCTGCAATAGCACTTAACGTTGGTTTA 477
Query 478 ACTCTTCTGAAAAGGAGATGTCGCGAATTGGGTATTCGCCGATGGCCTCATCGTAAACTC 537
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ACTCTACTAAAAAGGAGATGTCGCGAATTGGGTATTCGCCGATGGCCTCATCGTAAACTT 537
Query 538 ATGAGCCTTAA-CACTTTGATCAGTAATGTCAAGGAGCTGCAGAAGACGGAAGGCGAAGA 596
|||||| |||| ||||||||||||||| ||||||||||||||||||| ||||||||||||
Sbjct 538 ATGAGC-TTAAACACTTTGATCAGTAACGTCAAGGAGCTGCAGAAGATGGAAGGCGAAGA 596
Query 597 GAATGCAGAAAAACTTCAGGAAGCATTGGAGATGCTCGAGAAGGAGAAGAGGACGATTGA 656
||||||||||||||| ||||| || ||||||||||| ||||||||||||||||| |||||
Sbjct 597 GAATGCAGAAAAACTGCAGGACGCGTTGGAGATGCTTGAGAAGGAGAAGAGGACAATTGA 656
Query 657 GGAGTTACCGGATTTGGAGTTCAAGGACAAGACAAAGAGGCTAAGACAAGCTTGTTTCAA 716
||| || |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 657 GGATTTGCCGGATTTGGAGTTTAAGGACAAGACAAAGAGGCTAAGACAAGCTTGTTTCAA 716
Query 717 GGCTAACCACAAGAGGAAGAAGAAGAGAAGTCTCAAGTCCGATCAGTTTCAAGTGCCCTC 776
||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||
Sbjct 717 GGCTAACCACAAGAGGAAGAAGAAGAGAAGTCTCAAGTCCGATCAGTCTCAAGTACCCTC 776
Query 777 ATGTTCAAGCAGCGGATCAGTCCCTAGTGATGAGTCGGTTGATGCAGCAGGAATGGAGAG 836
|||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||
Sbjct 777 GTGTTCAAGCAGCGGATCAGTTCCTAGTGATGAGTCGGTTGATGAAGCAGGAATGGAGAG 836
Query 837 TGATGAAGAAGTGAAGTATCTCTTGTGTGGTTTCTCAAGTGAGTTTAGTAGTGGTTTGTG 896
|||||||||| ||||||||||||||||||||||||||||||| |||| ||||||||||||
Sbjct 837 TGATGAAGAAATGAAGTATCTCTTGTGTGGTTTCTCAAGTGAATTTACTAGTGGTTTGTG 896
Query 897 A 897
|
Sbjct 897 A 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43804176184
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5