BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339683
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75000.1 | Symbols: | GNS1/SUR4 membrane protein family | c... 1327 0.0
> AT1G75000.1 | Symbols: | GNS1/SUR4 membrane protein family |
chr1:28163650-28164586 FORWARD LENGTH=846
Length=846
Score = 1327 bits (718), Expect = 0.0
Identities = 798/837 (95%), Gaps = 3/837 (0%)
Strand=Plus/Plus
Query 10 AATTACTATCTAGCGGAGCATCCAACGATCGTTAACTTCCGTTGGAGTCCAACCCTATCA 69
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 13 AATTACTATTTAGCGGAGCATCCAACGATCGTTAACTTCCGTTGGAGTCCAACCCAATCC 72
Query 70 TACGCCTCCACGTGGTCTTTCCTCTTCACCGCCGTCTCATCTTACGTCATCGCCGCCGTC 129
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 73 TACGCCTCCACGTGGTCTTTCCTCTTCACCGCCGTCTCATCTTACATCATCGCCGCCGTC 132
Query 130 ActctccacctcctcctcctcataatcctctccctcTGTCACCGCCGCCGCGGATTCTCC 189
||||||||||||||||||||||||| ||||||||||| | ||||||||||||||||||||
Sbjct 133 ACTCTCCACCTCCTCCTCCTCATAACCCTCTCCCTCTCTAACCGCCGCCGCGGATTCTCC 192
Query 190 CTCGGTCCAATCCCAGCTCTACACAGCTTAACCATTTCCATAATATCCGCCGTCATCTTC 249
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 193 CTCGGTCCAATCCCAGCTCTACACAGCTTAACCATTTCCATAATCTCCGCCGTCATATTC 252
Query 250 GTCGGAATCCTCCTCTCCGCCGCAGCAGAGATCAGAGACACGCGCTGGCTATGGCGTCGC 309
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 253 GTCGGTATCCTCCTCTCCGCCGCAGCAGAGATCAGAGACACGCGGTGGCTATGGCGTCGC 312
Query 310 ACACGCACCACGGCTCTCCAATGGTTCCTCTGTTTTCCCGTAGGTACACGCGCTTCGGGG 369
|| |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 313 ACCCGCACCACTGCTCTCCAATGGTTCCTCTGCTTTCCCGTAGGTACACGCGCTTCGGGA 372
Query 370 CGCGTGTTCTTCTGGTCGTACGCGTTTTACCTCTCAAGATTTCTTCACTTGTTCCGTACT 429
||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||
Sbjct 373 CGCGTGTTCTTCTGGTCATACGCGTTTTACCTCTCAAGATTCCTTCACTTGTTCCGTACT 432
Query 430 TTCTTCTCCGTGATACGACGTCGTAAGCTCAGCTTCTTTCAGCTCATTAACCAGTCTTCT 489
|||||||||||||||||||||||||| ||||||||||| ||||| || ||||||||||||
Sbjct 433 TTCTTCTCCGTGATACGACGTCGTAAACTCAGCTTCTTCCAGCTTATCAACCAGTCTTCT 492
Query 490 CTTCTCTGTATCTCCTTCCTCTGGCTCGAATATTCCCAATCCTTTCAGGTAGTAGCGATA 549
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 493 CTTCTCTGTATCTCCTTCCTCTGGCTCGAATATTCCCAATCCTTTCAGGTGGTAGCGATA 552
Query 550 CTGTTAACGACCGTTTCGTACGCCGTTGTATACGGTTACAGATTCTGGACGGAGATCGGG 609
|| |||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||
Sbjct 553 CTATTAACGACCGTTTCGTACGCCGTTGTGTACGGTTACAGGTTCTGGACGGAGATTGGG 612
Query 610 TTACGTGGCGCGTGTTTTCCGTTCGTTGTTAACTGTCAAGCAATTCTGTTAGGGTGCATG 669
|| |||||||||||||||||||| || | ||||||||||| |||||||||||||| |||
Sbjct 613 TTGCGTGGCGCGTGTTTTCCGTTTGTCGGAAACTGTCAAGCCATTCTGTTAGGGTGTATG 672
Query 670 ACGGTTTGCCACGTAGGCGTACTCTGTATACACCTGGTCAAACGCGGCGGTTGTAACGGT 729
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 ACGGTTTGCCACGTAGGCGTACTCTGTATACACCTGGTCAAACGCGGCGGTTGTAACGGT 732
Query 730 ATCGGTGCTTGGTTGTTTAACTCTGTTCTTAACGCCGTTATCACGTTGCTCTACTTGAAG 789
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 733 ATCGGTGCTTGGTTGTTTAACTCTGTTCTTAACGCCGTTATCACGTTGCTCTACTTGAAG 792
Query 790 TTTTATTGCAAGACGCGTTCAATGATGATGACCAAGGCTGTTCACACCACCACATAA 846
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||
Sbjct 793 TTTTATTGCAAGACGCGTTCAATGATGA---CCAAGGCTAATCACAACACCACATAA 846
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5