BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339748
Length=507
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75700.1 | Symbols: HVA22G | HVA22-like protein G | chr1:284... 782 0.0
> AT1G75700.1 | Symbols: HVA22G | HVA22-like protein G | chr1:28423896-28424931
FORWARD LENGTH=594
Length=594
Score = 782 bits (423), Expect = 0.0
Identities = 476/502 (95%), Gaps = 1/502 (0%)
Strand=Plus/Plus
Query 1 ATGGTGTTTGGATACGCATATCCTGCTTATGAGTGTTTCAAAACGGTCGAACTCAACAAG 60
|||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 94 ATGGTGTTTGGATATGCATATCCTGCTTATGAGTGCTTCAAAACGGTCGAACTCAACAAG 153
Query 61 CCTGAGATTCAACAGCTTCAGTTCTGGTGTCAGTATTGGATTATTGTAGCTGCTTTGACG 120
||||| |||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 154 CCTGAAATTCAACAACTTCAGTTCTGGTGCCAGTATTGGATTATTGTAGCTGCTTTGACG 213
Query 121 ATTTTCGAAAGAATTGGTGATGCTCTTGTTTCTTGGCTACCAATGTATAGCGAGGCGAAG 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 214 ATTTTCGAAAGAATTGGTGATGCTCTTGTTTCTTGGTTACCAATGTATAGCGAGGCGAAG 273
Query 181 TTGGCATTCTTCATTTATCTCTGGTTTCCAAAGACTAAAGGAACTACATGCGTTTACGAT 240
||||| |||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 274 TTGGCTTTCTTCATTTATCTCTGGTTTCCAAAGACTAAAGGAACAACATACGTTTACGAT 333
Query 241 TCTTTCTTCAGGCCATATATAGCAAAGCATGAAAATGAAATTGACCGCAACTTGATGAAG 300
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 334 TCTTTCTTCAGGCCATATATAGCAAAGCATGAAAATGAAATTGACCGCAACTTGGTGAAG 393
Query 301 GTAAGGACTAGAGCTAGGGATATGGCAATGATATATCTTCAAAAAGCAATCAACCAAGGA 360
|||| ||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct 394 GTAAAGACTAGAGCTAAGGATATGGCAATGATATATCTCCAAAAAGCAATCAACCAAGGG 453
Query 361 CAGACCAAATTCTTTGAGATCTTGCAGTATATTACAGAACACTCAACACCAAAATCTAAG 420
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 454 CAGACCAAATTCTTTGAGATCTTACAGTATATCACAGAACAATCAACACCAAAATCTAAG 513
Query 421 TCTGAGGAAAAGAAAGAGACAACTCCACCTAAACTTGTTGATCCAATTCCTAAGGTGAAA 480
|||||||||||||||||||||| ||||||||| | ||||||||||| ||||||||||
Sbjct 514 GCTGAGGAAAAGAAAGAGACAACAATACCTAAACTCGATGATCCAATTCTTAAGGTGAAA 573
Query 481 GAAAATGAAGTCACTAAAATGA 502
||||| |||||||||||| |||
Sbjct 574 GAAAACGAAGTCACTAAA-TGA 594
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24212858854
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5