BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339769
Length=2112
Score E
Sequences producing significant alignments: (Bits) Value
AT1G75960.1 | Symbols: | AMP-dependent synthetase and ligase f... 2351 0.0
AT5G16340.1 | Symbols: | AMP-dependent synthetase and ligase f... 1325 0.0
AT5G16370.1 | Symbols: AAE5 | acyl activating enzyme 5 | chr5:5... 1208 0.0
AT1G75950.1 | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phas... 645 0.0
AT3G53060.1 | Symbols: ASK6, SK6 | SKP1-like 6 | chr3:19670166-... 86.1 1e-15
> AT1G75960.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr1:28518033-28519874 FORWARD LENGTH=1842
Length=1842
Score = 2351 bits (1273), Expect = 0.0
Identities = 1544/1675 (92%), Gaps = 18/1675 (1%)
Strand=Plus/Plus
Query 450 TCACATTGTGGTCACTCGACAAGAGCTAAAGAAAATGGAGGGA-TTGAAGCCAAGTGCCG 508
||||||||||||||||||| ||||||||||||||||||| || ||||||||||||||||
Sbjct 121 TCACATTGTGGTCACTCGAAAAGAGCTAAAGAAAATGGA-AGATTTGAAGCCAAGTGCCG 179
Query 509 CAAACTCGTCACCGTTAACGCCGTTAGGCTTTCTTGAGAGGGCAGCGACCGTGTATGGAG 568
| ||||||| ||| || || | |||||||||||||||||| ||||| |||||||||||||
Sbjct 180 CTAACTCGTTACCATTGACACTGTTAGGCTTTCTTGAGAGAGCAGCCACCGTGTATGGAG 239
Query 569 ACTGTACCTCCATCGTTTACGGCAACTCCGCCGTGTACACATGGCAG-GAAACGAATCTC 627
||||||||||||||||||||||||| ||| ||||||||||||||| | |||||||||| |
Sbjct 240 ACTGTACCTCCATCGTTTACGGCAATTCCACCGTGTACACATGGC-GAGAAACGAATCAC 298
Query 628 CGTTGCCTCCGCGTCGCGTCTGCTCTGTCTTCCATTGGAATCA-GAAGATCCGACGTTGT 686
||||||||| ||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 299 CGTTGCCTCTGCGTCGCGTCTGCTCTGTCTTCCATTGGAAT-AGGAAGATCCGACGTTGT 357
Query 687 CTCTGTCCTATCTGCTAACACTCCGGAGATGTACGAGCTCCAGTTCGCCGTTCCGATGTG 746
|||||||||||||||||| |||||||| ||||||||||||||||| ||||||||||||
Sbjct 358 CTCTGTCCTATCTGCTAATACTCCGGAAATGTACGAGCTCCAGTTTTCCGTTCCGATGTC 417
Query 747 TGGCGCAATCCTTAACAACCTCAACACGCGTCTTGATGCACAAACCGTCTCTGTTCTTCT 806
|||||| |||||||||||| |||| || || || || || | ||||||||||||||||||
Sbjct 418 TGGCGCGATCCTTAACAACATCAATACCCGCCTCGACGCGCGAACCGTCTCTGTTCTTCT 477
Query 807 CCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACGTGTTTTACTCCGATCTCGCCGTAGA 866
|||||||||||||||||||||||||||||||||| | ||||||||||||||||| || ||
Sbjct 478 CCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACTTCTTTTACTCCGATCTCGCTGTCGA 537
Query 867 AGCGATCGCGACGTTGCTCAATCCGCCGATTCTCGTCCTAATCG-C--TGACCAGGA-G- 921
||||||| ||| |||||||||||||||||||||||||||||||| | ||| |||| |
Sbjct 538 AGCGATCACGATGTTGCTCAATCCGCCGATTCTCGTCCTAATCGCCAATGAGGAGGAGGA 597
Query 922 -GAAGGAGGAGCTGTAGTGACGGAGCGTTCAAAATTCTGTTACTTGTACAGTGATCTAGT 980
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| |
Sbjct 598 AGAAGGAGGAGCTGAAGTAACGGAGCGTTCAAAATTCTGTTACTTGTACAGTGATCTAAT 657
Query 981 CAAGAGAGGCAATCCGGATTTTAAATGGATCCGACCCGAAAGCGAATGGGACCCGATTGT 1040
|| ||||| |||||||||||||||||||||||||||| ||| |||||||||||||||||
Sbjct 658 CACTAGAGGGAATCCGGATTTTAAATGGATCCGACCCGGAAGTGAATGGGACCCGATTGT 717
Query 1041 GGTCAACTATACATCCGGTACGACGTCGTCTCCTAAAGGCGTGGTTCATTGCCACAGGGG 1100
|||||| || ||||| ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 718 GGTCAATTACACATCAGGTACGACGTCGTCTCCTAAAGGAGTGGTTCATTGCCACAGGGG 777
Query 1101 TATTTTCGTCATGGCGCTTGATTCTTTAACCGATTGGGCCGTACCGAAAAATCCGGTTTA 1160
||| ||||||||| |||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 778 TATATTCGTCATGACGCTTGATTCCCTAACCGATTGGGCCGTACCGAAAACCCCGGTTTA 837
Query 1161 CTTATGGACCTTACCGATATTTCACGCTAACGGTTGGACCTATCCATGGGGAATCGCCGC 1220
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 838 CTTATGGACCTTACCGATATTTCACGCCAACGGTTGGACCTATCCATGGGGAATCGCCGC 897
Query 1221 CGTCGGAGGAACTAACGTCTGTGTGCGTAAACTCCACGCGCCGTTAATCTACCGTCTAAT 1280
|||||||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||
Sbjct 898 CGTCGGAGGAACTAACGTCTGTGTGCGTAAACTCCACGCGCCGTCAATATACCATCTAAT 957
Query 1281 CCGTGATCACGGCGTGACTCACATGTGCGGCGCACCAATATTGCTTCAGATTCTATCGGC 1340
|||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 958 CCGTGATCACGGCGTGACTCACATGTACGGCGCACCAATAGTGCTTCAGATTCTATCGGC 1017
Query 1341 AAGTCAAGAATCTGAACAGCCTCTTAAGAACCCGGTCAAATTCTTAACCGCCGGTTCGGC 1400
|||||||||||||| ||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 1018 GAGTCAAGAATCTGATCAGCCTCTTAAGAGTCCGGTCAATTTCTTAACCGCCGGTTCTTC 1077
Query 1401 TCCGCCGGCTACGGTGCTCCTCCGCGCCGAATCTCTAGGTTTCTTCGTCAGCCACGGTTA 1460
|||||| ||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 1078 TCCGCCAGCTACGGTGCTTCTCCGCGCCGAGTCTCTAGGTTTCATCGTCAGTCACGGTTA 1137
Query 1461 CGGATTAACGGAGACAGCTGGTGTGATCATCTCCTGCGCGTGGAACCCAAATTGGAATCG 1520
|||||||||||||||||| ||||||||| |||||||||||||||| ||||| ||||||||
Sbjct 1138 CGGATTAACGGAGACAGCCGGTGTGATCGTCTCCTGCGCGTGGAAGCCAAACTGGAATCG 1197
Query 1521 ATTACCGGCGAGTGACCAAGCG-AGATTGAAATCACGGCAAGGAGTGAGAACCGTTGGAT 1579
|||||||||||||| |||||| | |||||||||||||||||||||||||||||| ||||
Sbjct 1198 GTTACCGGCGAGTGATCAAGCGCA-ATTGAAATCACGGCAAGGAGTGAGAACCGTCGGAT 1256
Query 1580 TTAGCGAAATCGATGTAGTGGATCGAGAATCGGGTCGGAGCGTGGAGAGAGATGGAGCAA 1639
|||||||||||||||||||||||| |||||| |||||||||||||||||||| |||| ||
Sbjct 1257 TTAGCGAAATCGATGTAGTGGATCCAGAATCAGGTCGGAGCGTGGAGAGAGACGGAGAAA 1316
Query 1640 CATTCGGAGAAATAGCGTTAAGAGGGAGTTCAATCATGCTTGGTTACTTGAAAGATCCGA 1699
|| |||||||||||| ||| |||||||||||||||||||| || ||||| ||| ||||||
Sbjct 1317 CAGTCGGAGAAATAGTGTTGAGAGGGAGTTCAATCATGCTCGGATACTTAAAAAATCCGA 1376
Query 1700 TCGGAACTCAAAAATCGTTTAAGAACGGATGGTTCTTCACCGGAGACGTCGGTGTGATTC 1759
||||||||||||| |||||||| ||||| |||||||||||||||||| ||||||||||||
Sbjct 1377 TCGGAACTCAAAATTCGTTTAAAAACGGGTGGTTCTTCACCGGAGACCTCGGTGTGATTC 1436
Query 1760 ACGGAGATGGTTACTTAGAGATCAAAGATCGATCAAAAGATGTGATTATTTCAGGAGGAG 1819
|||| ||||||||||||||||| |||||| |||| |||||||||||||||||||||||||
Sbjct 1437 ACGGGGATGGTTACTTAGAGATTAAAGATAGATCGAAAGATGTGATTATTTCAGGAGGAG 1496
Query 1820 AGAATGTGAGCAGTGTGGAAGTGGAGGCGGTGTTGTACACAAATCCGGCGGTGAATGAAG 1879
|||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1497 AGAATGTGAGTAGTGTGGAAGTGGAGGCGGTGTTGTACACGAATCCGGCGGTGAATGAAG 1556
Query 1880 CGGCGGTGGTGGCTAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTGAGTT 1939
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1557 CGGCGGTGGTGGCTAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTTAGTT 1616
Query 1940 TAAAACCCGGGTTGACCCGGAAACCCACGGATAAGGAGATTATTGAGTATTGCAAGA-AG 1998
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | |
Sbjct 1617 TAAAACCCGGGTTGACCCGGAAACCAACGGATAAGGAGATTATAGAGTATTGCAA-ATAT 1675
Query 1999 AAGATGCCACGTTACATGG-TGCCTAAAACTGTGTCGTTTCTTGAAGAGTTACCAAAGAC 2057
|| |||||||||||||||| | |||||||| || ||||||||||||||||||||||||||
Sbjct 1676 AAAATGCCACGTTACATGGCT-CCTAAAACGGTCTCGTTTCTTGAAGAGTTACCAAAGAC 1734
Query 2058 TTCTACAGGAAAGATTACAAAGTTATTGCTTAAAGAGATTGCCaaaaaaaTGTAA 2112
||| || || ||||||| ||||| |||||||||||||||||||||||| ||||||
Sbjct 1735 TTCCACTGGGAAGATTATAAAGTCATTGCTTAAAGAGATTGCCAAAAACATGTAA 1789
> AT5G16340.1 | Symbols: | AMP-dependent synthetase and ligase
family protein | chr5:5349094-5350907 REVERSE LENGTH=1814
Length=1814
Score = 1325 bits (717), Expect = 0.0
Identities = 1358/1662 (82%), Gaps = 66/1662 (4%)
Strand=Plus/Plus
Query 484 ATGGAGGGATTGAAGCCAAGTGCCGCAAACTCGTCACCGTTAACGCCGTTAGGCTTTCTT 543
||||||| | |||||||| | |||||||||||| | ||||| |||||| |||| ||| ||
Sbjct 1 ATGGAGGAAATGAAGCCATGCGCCGCAAACTCGCCGCCGTTGACGCCGATAGG-TTTTTT 59
Query 544 -GAGAGGGCAGCGACCGTGTATGGAGACTGTACCTCCATCGTTTACGGCAACTCCGCCGT 602
||||| || || ||||| || || |||||||||||||||||||| |||| | | ||||
Sbjct 60 AGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTATGGCAGCAACACCGT 119
Query 603 GTACACATGGCAG-GAAACGAATCTCCGTTGCCTCCGCGTCGCGTCTGCTCTGTCTTCCA 661
||||| |||| | ||||| || |||||||| |||||||| |||||| |||||||||| |
Sbjct 120 TTACACGTGGC-GTGAAACAAACCTCCGTTGTCTCCGCGTGGCGTCTTCTCTGTCTTCAA 178
Query 662 TTGGAATCAGAAGATCCGACGTTGTCTCTGTCCTATCTGCTAACACTCCGGAGATGTACG 721
| |||||| | || || ||||| |||||||| || ||| | || ||||||| |||||||
Sbjct 179 TCGGAATCGGCAGGTCTGACGTAGTCTCTGTTCTCTCTCCCAATACTCCGGCTATGTACG 238
Query 722 AGCTCCAGTTCGCCGTTCCGATGTGTGGCGCAATCCTTAACAACCTCAACACGCGTCTTG 781
|||||||||| || ||||| |||| ||||||||||| |||||| ||||||| || || |
Sbjct 239 AGCTCCAGTTTGCTGTTCCCATGTCCGGCGCAATCCTCAACAACATCAACACACGCCTCG 298
Query 782 ATGCACAAACCGTCTCTGTTCTTCTCCGCCATTGCGAGTCTAAGCTGCTCTTCGTCGACG 841
| |||| |||||||||||||||||||| || || || |||||||| || ||||||||||
Sbjct 299 ACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTGAATCTAAGCTTCTTTTCGTCGACG 358
Query 842 TGTTTTAC-TCCGATCTCGCCGTAGAAGCGATCGCGACGTTG-C-TC-AATCCGCCGATT 897
| || | | | ||||||||||| |||||| || ||| | || | | |||||||||||
Sbjct 359 TCTTCTCCGT-TGATCTCGCCGTTGAAGCGGTCTCGATGATGACGACTGATCCGCCGATT 417
Query 898 CTCGTCCTAATCGCTGA-CCAG--GAGGAAGGAGGAGCTG-T-A-GTGACGGAGCGTTCA 951
|||||| | ||||| || || ||||||||||||| || | | ||| | || | ||||
Sbjct 418 CTCGTCGTCATCGCCGATAAAGAAGAGGAAGGAGGAGTTGCTGACGTGGCTGATCTTTCA 477
Query 952 AAATTCTGTTAC-TTGTACAG-TGATC-TAGTC-AAGAGAGGCAATCCGGATTTTAAATG 1007
|||||| ||||| | ||| | ||||| || || || ||||| |||||| |||||||||
Sbjct 478 AAATTCAGTTACACT-TAC-GATGATCTTA-TCGAA-AGAGGTGATCCGGGTTTTAAATG 533
Query 1008 GATCCGACCCGAAAGCGAATGGGACCCGATTGTGGTCAACTATACATCCGGTACGACGTC 1067
|||||||||||||||||||||||| ||| ||||| | || || || ||||||||||| ||
Sbjct 534 GATCCGACCCGAAAGCGAATGGGATCCGGTTGTGCTTAATTACACTTCCGGTACGACTTC 593
Query 1068 -GTCTCCTAAAGGCGTGGTTCATTGCCACAGGGGTATTTTCGTCATGGC-GCTTGATTCT 1125
| |||||||||| ||||| || |||||||| || |||||||| ||| | | |||||||
Sbjct 594 AG-CTCCTAAAGGAGTGGTACACTGCCACAGAGGAATTTTCGTAATGTCAG-TTGATTCA 651
Query 1126 TTAACCGATTGGGCCGTACCGAAAAATCCGGTTTACTTATGGACCT-TACCGATATTTCA 1184
||| ||||||||||||||||||||||||||||||||||||| || |||||||||||||
Sbjct 652 CTAATTGATTGGGCCGTACCGAAAAATCCGGTTTACTTATGGA-CTCTACCGATATTTCA 710
Query 1185 CGCTAACGGTTGGACCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTGT 1244
| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 711 CTCTAACGGTTGGACCAATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTTT 770
Query 1245 GCGTAAACTCCACGCGCCGTTAATCTACCGTCTAATCCGTGATCACGGCGTGACTCACAT 1304
||||||| | |||||||||||||||||||||| ||||||||||||||||| || |||||
Sbjct 771 GCGTAAATTTGACGCGCCGTTAATCTACCGTCTGATCCGTGATCACGGCGTCACACACAT 830
Query 1305 GTGCGGCGCACCAATATTGCTTCAG-AT-TCTATCGGCAAGTCAAGAATCTGAACAGCCT 1362
||| || || || | |||| || || | |||| || | ||| |||||| ||||||
Sbjct 831 GTGTGGAGCTCCGGTGGTGCT-CAACATGT-TATCCGCGACTCAGGAATCT---CAGCCT 885
Query 1363 CTTAAGAA-CCCGGTCAA-ATTCTTAACCGCCGGTTCGGCTCCGCCGGCTACGGTGCTCC 1420
||||| | |||| |||| || ||||||||||||||| | || || ||||| || ||||
Sbjct 886 CTTAACCATCCCG-TCAACAT-CTTAACCGCCGGTTCTCCGCCTCCAGCTACCGTCCTCC 943
Query 1421 TCCGCGCCGAATCTCTAGGTTTC-TTCGTCAGCCACGGTTACGGATTAACGGAGACAGCT 1479
|||| |||||||| | |||||| || |||| |||||||||||||||||||| || ||
Sbjct 944 TCCGAGCCGAATCAATTGGTTTCGTTA-TCAGTCACGGTTACGGATTAACGGAAACCGCC 1002
Query 1480 GGTGTGATCATCTCCTGCGCGTGGAACCCAAATTGGAATCGATT-ACCGGCGAGTGACCA 1538
||||| ||| |||| ||||||||||| ||||| ||||||| ||| |||||| || || |
Sbjct 1003 GGTGTAATCGTCTCGTGCGCGTGGAAGCCAAAATGGAATC-ATTTACCGGCAAGCGATCG 1061
Query 1539 AGCGAGATTGAAATCACGGCAAGGAGTGAGAACCGTTGGATTTAGC-GAAATCGATGTAG 1597
|||||||||||| |||||||||||||||||||||| || |||| | |||||||| || |
Sbjct 1062 AGCGAGATTGAAGGCACGGCAAGGAGTGAGAACCGTCGGGTTTA-CTGAAATCGACGTGG 1120
Query 1598 TGGATCGAGAATCGGGTCGGAGCGTGGAGAGAGATGGAGCAACAT-TCGGAGAAATAGCG 1656
|||||| ||||||||| |||||| |||||| |||||| ||| | |||||||||| | |
Sbjct 1121 TGGATCCTGAATCGGGTTTGAGCGTTGAGAGAAATGGAGAAAC-TGTCGGAGAAATTGTG 1179
Query 1657 TTAAGAGGGAGTTCAATCATGCTTGGTTACTTGAAAGATCCGATCGGAACTCAAAAATCG 1716
| ||||| || || ||||||| |||||||| ||||||||| ||||||| | ||| |
Sbjct 1180 ATGAGAGGAAGCTCGGTCATGCTCGGTTACTTAAAAGATCCGGTCGGAACAGAGAAAGC- 1238
Query 1717 TTTAA-GAACGGATGGTTCTT-CACCGGAGACGTCGGTGTGATTCACGGAGATGGTTA-C 1773
||||| |||||| ||||| || ||||||||| || ||||||||||| |||||||| |
Sbjct 1239 TTTAAAGAACGGGTGGTT-TTACACCGGAGATGTTGGTGTGATTCATTCCGATGGTTATC 1297
Query 1774 TTAGAGATCAAAGATCGATCAAAAGATGTGATTATTTCAGGAGGAGAGAATGTGAGCAGT 1833
| |||||| |||||| |||| |||||| | ||||| | ||||| ||||||||||| |||
Sbjct 1298 T-AGAGATTAAAGATAGATCGAAAGATATAATTATAACGGGAGGTGAGAATGTGAGTAGT 1356
Query 1834 GTGGAAGTGGAGGCGGTGTTGTACACAAATCCGGCGGTGAATGAAGCGGCGGTGGTGGCT 1893
|| || || || ||||||||||||| | ||||||||||||||||| |||||||||||||
Sbjct 1357 GTTGAGGTTGAAACGGTGTTGTACACGATTCCGGCGGTGAATGAAGTGGCGGTGGTGGCT 1416
Query 1894 AGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTGAGTTT-AAAACCCGGGTT 1952
|||||||| ||||||||||||||||| |||||||| ||||||||||| |||| |||||
Sbjct 1417 AGACCTGATGAGTTTTGGGGAGAGACACCGTGTGCGTTTGTGAGTTTGAAAAAT-GGGTT 1475
Query 1953 GACCCGGAAACCCACGGATAAGGAGATT-ATTGAGTATTGCAAGAA-GAAGATGCC-ACG 2009
| ||||||| ||||| |||| ||| || |||||||| | ||| ||||||||| | |
Sbjct 1476 TAGTGGGAAACCTACGGAGGAGGA-ATTGATGGAGTATTGTA-GAAAGAAGATGCCCAAG 1533
Query 2010 TTACATGGTGCCTAAAACTGTGTCGTTTCTTGAAGAGTTACCAAAGACTTCTACAGGAAA 2069
| | ||||| |||||||| ||||||||| | || ||||| || |||| ||| || |||||
Sbjct 1534 T-ATATGGTTCCTAAAACGGTGTCGTTTATGGATGAGTTGCCTAAGAGTTCGACGGGAAA 1592
Query 2070 GATTACAAAGTTAT-TGCTTAAAGAGATTGCCaaaaaa-aTG 2109
| |||| ||||| | |||||| || ||||| ||| || |||
Sbjct 1593 GGTTACGAAGTT-TGTGCTTAGGGACATTGC-AAAGAAGATG 1632
> AT5G16370.1 | Symbols: AAE5 | acyl activating enzyme 5 | chr5:5356605-5358511
REVERSE LENGTH=1907
Length=1907
Score = 1208 bits (654), Expect = 0.0
Identities = 1337/1662 (80%), Gaps = 66/1662 (4%)
Strand=Plus/Plus
Query 484 ATGGAGGGATTGAAGCCAAGTGCCGCAAACTCGTCACCGTTAACGCCGTTAGGCTTTCTT 543
|||||| | |||||||| | |||||||||||| | ||||| |||||| |||| ||||||
Sbjct 31 ATGGAGCAAATGAAGCCATGCGCCGCAAACTCGCCGCCGTTGACGCCGATAGG-TTTCTT 89
Query 544 -GAGAGGGCAGCGACCGTGTATGGAGACTGTACCTCCATCGTTTACGGCAACTCCGCCGT 602
||||| || || ||||| || || |||||||||||||||||||| |||| | | ||||
Sbjct 90 AGAGAGAGCCGCCACCGTTTACGGTGACTGTACCTCCATCGTTTATGGCAGCAACACCGT 149
Query 603 GTACACATGGCAG-GAAACGAATCTCCGTTGCCTCCGCGTCGCGTCTGCTCTGTCTTCCA 661
||||| |||| | ||||| || |||||||| |||||||| |||||| |||||||||| |
Sbjct 150 TTACACGTGGC-GTGAAACAAACCTCCGTTGTCTCCGCGTGGCGTCTTCTCTGTCTTCAA 208
Query 662 TTGGAATCAGAAGATCCGACGTTGTCTCTGTCCTATCTGCTAACACTCCGGAGATGTACG 721
| |||||| | || || ||||| |||||||| || ||| | || ||||||| |||||||
Sbjct 209 TCGGAATCGGCAGGTCTGACGTAGTCTCTGTTCTCTCTCCCAATACTCCGGCTATGTACG 268
Query 722 AGCTCCAGTTCGCCGTTCCGATGTGTGGCGCAATCCTTAACAACCTCAACACGCGTCTTG 781
|||||||||| || ||||| |||| ||||||||||| |||||| ||||||| || || |
Sbjct 269 AGCTCCAGTTTGCTGTTCCCATGTCCGGCGCAATCCTCAACAACATCAACACTCGCCTCG 328
Query 782 ATGCACAAACCGTCTCTGTTCTTCTCCGCCA-T-TGCGAGTCTAAGCTGCTCTTCGTCGA 839
| |||| |||||||||||||||||||| || | || || |||||||| |||||||||||
Sbjct 329 ACGCACGCACCGTCTCTGTTCTTCTCCGTCACTGTG-GA-TCTAAGCTTCTCTTCGTCGA 386
Query 840 CGTGTTTTAC-TCCGATCTCGCCGTAGAAGCGATCGCGACGTTG-C-TC-AATCCGCCGA 895
||| || | | | ||||| ||||| ||||||||| ||| | || | | |||||||||
Sbjct 387 CGTCTTCTCCGT-TGATCTTGCCGTTGAAGCGATCTCGATGATGACGACTGATCCGCCGA 445
Query 896 TTCTCGTCCTAATCGCTGA-CCAG--GAGGAAGGAGGAGCTG-T-A-GTGACGGAGCGTT 949
|||| ||| | ||||| || || || |||||||||| || | | ||| |||| |||
Sbjct 446 TTCTTGTCTTCATCGCCGATAAAGAAGAAGAAGGAGGAGATGCTGACGTGGCGGATCGTA 505
Query 950 CAAAATTCTGTTAC-TTGTACAG-TGATCTAG-TCAAGAGAGGCAATCCGGATTTTAAAT 1006
| |||||| ||||| | ||| | |||||| | || | ||||| ||| |||||||||||
Sbjct 506 CCAAATTCAGTTACACT-TAC-GATGATCT-GATCCATAGAGGTGATCTGGATTTTAAAT 562
Query 1007 GGATCCGACCCGAAAGCGAATGGGACCCGATTGTGGTCAACTATACATCCGGTACGACGT 1066
||||||||||||||||||||||||| ||| ||||| | || || || ||||||||||| |
Sbjct 563 GGATCCGACCCGAAAGCGAATGGGATCCGGTTGTGCTTAATTACACTTCCGGTACGACTT 622
Query 1067 CGTCTCCTAAAGGCGTGGTTCATTGCCACAGGGGTATTTTCGTCATGGCGCTTGATTCTT 1126
|| |||||||||| || || || |||||||| || |||||||| ||| | |||||||||
Sbjct 623 CGGCTCCTAAAGGAGTCGTACACTGCCACAGAGGAATTTTCGTAATGTCAATTGATTCTT 682
Query 1127 TAACCGATTGGGCCGTACCGAAAAATCCGGTTTACTTATGGACCT-TACCGATATTTCAC 1185
||| ||||||| |||||||||||||||||||||||||||||| || ||||||||||||||
Sbjct 683 TAATCGATTGGACCGTACCGAAAAATCCGGTTTACTTATGGA-CTCTACCGATATTTCAC 741
Query 1186 GCTAACGGTTGGACCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTGTG 1245
|||||||| |||| ||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 742 GCTAACGGCTGGAGCTATCCATGGGGAATCGCCGCCGTCGGAGGAACTAACGTCTGTTTG 801
Query 1246 CGTAAACTCCACGCGCCGTTAATCTACCGTCTAATCCGTGATCACGGCGTGACTCACATG 1305
|||||| || |||||||||||||||||||| | ||||||||||||||||| || ||||||
Sbjct 802 CGTAAATTCGACGCGCCGTTAATCTACCGTTTGATCCGTGATCACGGCGTCACACACATG 861
Query 1306 TGCGGCGCACCAATATTGCTTCAG-AT-TCTATCGGCAAGTCAA-GAATCTGAACAGCCT 1362
|| || || || || |||| || || | | ||||| | | || |||| | |||||
Sbjct 862 TGTGGAGCTCCGGTAGTGCT-CAACATGT-TGTCGGCGACT-AACGAATTT---CAGCCG 915
Query 1363 CTTAAGAAC--CCGGTCAA-ATTCTTAACCGCCGGTTCGGCTCCGCCGGCTA-CGGTGCT 1418
|||| | | || ||||| || ||||||||||||| | | || || || | | || ||
Sbjct 916 -TTAA-ATCGTCCTGTCAACAT-CTTAACCGCCGGTGCTCCGCCTCCAGC-AGCCGTACT 971
Query 1419 CCTCCGCGCCGAATCTCTAGGTTTCTTCG-TCAGCCACGGTTACGGATTAACGGAGACAG 1477
|||||| || ||||| | || ||| | | | || ||||| ||||| |||||||| || |
Sbjct 972 CCTCCGAGCAGAATCAATTGGATTCGT-GATAAGTCACGGATACGGGTTAACGGAAACCG 1030
Query 1478 CTGG-TGTGATCATCTCCTGCGCGTGGAACCCAAATTGGAATCGATTACCGGCGAGTGAC 1536
| || | | | | | || ||||||||||| ||| | |||||||| ||||||||||| ||
Sbjct 1031 CCGGAT-TAAACGTGTCATGCGCGTGGAAGCCACAGTGGAATCGTTTACCGGCGAGCGAT 1089
Query 1537 CAAGCGAGATTGAAATCACGGCAAGGAGTGAGAACCGTTGGATTTAGC-GAAATCGATGT 1595
| |||||| |||||| |||||||||||||||||||||| ||||||| | |||||||| ||
Sbjct 1090 CGAGCGAGGTTGAAAGCACGGCAAGGAGTGAGAACCGTCGGATTTA-CTGAAATCGACGT 1148
Query 1596 AGTGGATCGAGAATCGGGTCGGAGCGTGGAGAGAGATGGAGCAACATTCGGAGAAATAGC 1655
||||||| ||||| ||| ||||||| |||||| | |||| ||| ||||||||||||
Sbjct 1149 GGTGGATCCTGAATCAGGTAGGAGCGTTGAGAGAAACGGAGAAACCGTCGGAGAAATAGT 1208
Query 1656 GTTAAGAGGGAGTTCAATCATGCTTGGTTACTTGAAAGATCCGATCGGAACTCAAAAATC 1715
| | ||||| || || |||||||| |||||||| ||||||||| ||||||| | ||| |
Sbjct 1209 GATGAGAGGAAGCTCGATCATGCTCGGTTACTTAAAAGATCCGGTCGGAACAGAGAAAGC 1268
Query 1716 GTTTAA-GAACGGATGGTTCTT-CACCGGAGACGTCGGTGTGATTCACGGAGATGGTTA- 1772
||||| |||||| ||||| || ||||||||| || ||||||||||| ||||||||
Sbjct 1269 -TTTAAAGAACGGGTGGTT-TTACACCGGAGATGTTGGTGTGATTCATTCCGATGGTTAT 1326
Query 1773 CTTAGAGATCAAAGATCGATCAAAAGATGTGATTATTTCAGGAGGAGAGAATGTGAGCAG 1832
|| |||||| |||||| |||| |||||| | ||||| | ||||| || |||||||| ||
Sbjct 1327 CT-AGAGATTAAAGATAGATCGAAAGATATAATTATAACGGGAGGTGAAAATGTGAGTAG 1385
Query 1833 TGTGGAAGTGGAGGCGGTGTTGTACACAAATCCGGCGGTGAATGAAGCGGCGGTGGTGGC 1892
||| || || || |||| ||||| || ||||||||||||||||||| ||||||||||||
Sbjct 1386 TGTTGAGGTTGAAACGGTTTTGTATACGAATCCGGCGGTGAATGAAGTGGCGGTGGTGGC 1445
Query 1893 TAGACCTGACGAGTTTTGGGGAGAGACGCCGTGTGCTTTTGTGAGTTT-AAAACCCGGGT 1951
|||||||| | |||||||||||||||||||||||| ||||| ||||| |||| ||||
Sbjct 1446 GAGACCTGATGTGTTTTGGGGAGAGACGCCGTGTGCGTTTGTTAGTTTGAAAAGT-GGGT 1504
Query 1952 TGACCCGGAA-ACCCACGGATAAGGAGATTATTGAGTATTGCAAGAAGAAGATGCC-ACG 2009
|||| | || ||| ||||| ||| || || |||||||| | |||||||||||| |
Sbjct 1505 TGACTCA-AAGACCGACGGAGGTGGAAATGATAGAGTATTGTAGGAAGAAGATGCCGAAA 1563
Query 2010 TTACATGGTGCCTAAAACTGTGTCGTTTCTTGAAGAGTTACC-AAAGACTTCTACAGGAA 2068
| | ||||| |||||||| ||||| ||| | || ||| | || ||| ||||| || || |
Sbjct 1564 T-ATATGGTTCCTAAAACGGTGTCCTTTGTGGATGAGCTGCCTAAA-ACTTCGACGGGGA 1621
Query 2069 AGATTACAAAGTTAT-TGCTTAAAGAGATTGCCaaaaaaaTG 2109
|| ||| ||||| | | |||| ||||||||| || || |||
Sbjct 1622 AGGTTATGAAGTT-TGTACTTAGAGAGATTGCGAAGAAGATG 1662
> AT1G75950.1 | Symbols: SKP1, ASK1, ATSKP1, SKP1A, UIP1 | S phase
kinase-associated protein 1 | chr1:28516548-28517699 FORWARD
LENGTH=895
Length=895
Score = 645 bits (349), Expect = 0.0
Identities = 418/451 (93%), Gaps = 5/451 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTCGAAGAAGATTGTGTTGAAGAGTTCCGATGGTGAATCTTTCGAGGTTGAAGAG 60
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 168 ATGTCTGCGAAGAAGATTGTGTTGAAGAGTTCCGATGGTGAATCTTTCGAGGTTGAGGAG 227
Query 61 GCGGTGGCTCTCGAGTCACAGACCATAGCCCACATGGTTGAAGACGACTGCGTCGACAAC 120
|||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 228 GCGGTGGCTCTCGAGTCACAAACCATAGCGCATATGGTTGAAGACGACTGCGTCGACAAC 287
Query 121 GGAGTCCCTCTTCCCAACGTCACGAGCAAGATCCTCGCGAAGGTGATCGAGTATTGCAAG 180
|||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 288 GGAGTCCCTCTTCCTAACGTCACGAGCAAGATCCTCGCCAAGGTGATCGAGTATTGCAAG 347
Query 181 AAGCACGTCGAGGTTGCTGCCGCCAAGAGC-GAGGCCGTCGATGGTGCT---ACCTCCGA 236
| ||||||||||| ||||||| | ||| || ||||||||||| |||||| ||||||||
Sbjct 348 AGGCACGTCGAGGCTGCTGCCTCTAAG-GCCGAGGCCGTCGAGGGTGCTGCTACCTCCGA 406
Query 237 TGAAGACCTCAAGGCCTGGGACACTGAGTTTATGAAGATCGATCAGGCTACGCTCTTTGA 296
||| || || |||||||||||| |||| ||||||||||||||||| ||||| ||||||||
Sbjct 407 TGACGATCTTAAGGCCTGGGACGCTGATTTTATGAAGATCGATCAAGCTACTCTCTTTGA 466
Query 297 ACTCATTCTGGCTGCTAATTACCTGAACATCAAGAACTTGCTTGACCTCACATGTCAGAC 356
||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||
Sbjct 467 ACTCATTCTGGCTGCTAATTACCTGAATATCAAGAACTTGCTTGATCTAACATGTCAGAC 526
Query 357 AGTGGCGGACATGATCAAAGGGAAGACTCCAGAAGAGATCCGCACAACGTTCAACATCAA 416
||| ||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 527 AGTTGCGGATATGATCAAAGGAAAGACTCCAGAAGAGATCCGCACAACGTTCAACATTAA 586
Query 417 GAACGACTTCACACCCGAGGAAGAAGAAGAG 447
||||||||||||||| |||||||| ||||||
Sbjct 587 GAACGACTTCACACCAGAGGAAGAGGAAGAG 617
> AT3G53060.1 | Symbols: ASK6, SK6 | SKP1-like 6 | chr3:19670166-19670423
FORWARD LENGTH=258
Length=258
Score = 86.1 bits (46), Expect = 1e-15
Identities = 77/92 (84%), Gaps = 2/92 (2%)
Strand=Plus/Plus
Query 100 GAAGACGACTGCGTCGACAACGGAGTCCCTCTTCCCAACGTCACGAGCAAGATCCTCGCG 159
|||||||| || | ||| || ||| |||||||||| ||||| || |||||||| |||
Sbjct 22 GAAGACGATTGTGCCGATAATGGAATCCCTCTTCCAAACGTGACAAGCAAGATACTC-TT 80
Query 160 A-AGGTGATCGAGTATTGCAAGAAGCACGTCG 190
| |||||||||||||||||||||||||||||
Sbjct 81 ATTGGTGATCGAGTATTGCAAGAAGCACGTCG 112
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104718336870
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5