BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339849
Length=750
Score E
Sequences producing significant alignments: (Bits) Value
AT1G76770.1 | Symbols: | HSP20-like chaperones superfamily pro... 917 0.0
> AT1G76770.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr1:28813569-28814378 FORWARD LENGTH=735
Length=735
Score = 917 bits (496), Expect = 0.0
Identities = 683/765 (89%), Gaps = 45/765 (6%)
Strand=Plus/Plus
Query 1 ATGGAGCTTGAATTAGGTCTAAAGATCACTCGAACTAAAGACGATGTTTCTTCCTCTACA 60
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATGGAGCTTGAATTAGGTCTGAAGATCACTCGGACTAAAGACGATGTTTCTTCCTCTACA 60
Query 61 GATTTTAGGGTTACCAGTGATTCTTTTGGTCAGC-TATCTCTTTCTCGAGAAACCAACTC 119
|||||| ||||| |||| |||||||||||||| | | || ||||||||||||||||||||
Sbjct 61 GATTTTCGGGTTGCCAGAGATTCTTTTGGTCATCGT-TCACTTTCTCGAGAAACCAACTC 119
Query 120 TGTGTTT-TTCCTCATTCTTCATCTCAAAGGATTTAAGAAGGAAGGTATCGATATCGAGA 178
||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 120 TGT-TTTCTTCCTCATTCTTCATCTCAAAGGATTTAAGAAGGATGGTATCGATATCGAGA 178
Query 179 TAAACAAAGAAGGGAATCGGATTAAGATCAGCGGAAGCAAAA-AGGTAGAAGAGATGGTT 237
|||||||||||||||||| |||||||||||||||||| |||| |||| ||||||||||||
Sbjct 179 TAAACAAAGAAGGGAATCTGATTAAGATCAGCGGAAG-AAAACAGGTTGAAGAGATGGTT 237
Query 238 TTGGTAAAGTGGGTGGAGTGGAAAAAGGCAACAGAAATCAAGGAATTCAAGAAAGTGTTT 297
||||||||||||||||| |||||||||| ||||||||| ||||||||||| |||||||||
Sbjct 238 TTGGTAAAGTGGGTGGAATGGAAAAAGGAAACAGAAATAAAGGAATTCAAAAAAGTGTTT 297
Query 298 CGGATTCCAGAAATCGTTAA-TCTTGACAAGATCAAAGCGAGGTTTAATGAAGAAGATGG 356
||||||||||| || | ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 298 CGGATTCCAGATATTG-TAATTCTTGACAAGATCAAAGCGAGGTTTAATGAAGAAGATGG 356
Query 357 GACTTTAACGGTTACAATGCGTAAGAAAGTTAAGGGGATTACCGGTTTAAAGATCAAGGA 416
||||||||| |||||||||| ||||||||||||||| ||||||||| | |||||| ||||
Sbjct 357 GACTTTAACTGTTACAATGCCTAAGAAAGTTAAGGGAATTACCGGTCTGAAGATCGAGGA 416
Query 417 aga--a-ga-g--ga--ag-taaaagatgcag-tagtggaagagaaaacagaggaaaaaa 466
||| | || | || || | ||||| || | |||| ||||||||||||||||| ||||
Sbjct 417 AGAGGACGAAGAAGAGGAGATGAAAGA-GCCGATAGTAGAAGAGAAAACAGAGGAGAAAA 475
Query 467 cagaaccagaagaagaaatcaaagaagagccaaaacctgaggaagaagaagaagaacagg 526
||||||||||||||||||||||||||||| ||||||||||||||||| || | |
Sbjct 476 CAGAACCAGAAGAAGAAATCAAAGAAGAGACAAAACCTGAGGAAGAA-AA------C-G- 526
Query 527 aagaagcagaagaggcacagagagaagaggaagaagacaagattggagaagaggttgttg 586
|||||||||||||| |||||||||||||||||||||| | | ||||||
Sbjct 527 AAGAAGCAGAAGAGCCACAGAGAGAAGAGGAAGAAGA---G---G---------TTGTTG 571
Query 587 aggaagaaacaagggatcatgagga-aaagaaagaagaagaaattgaagataaaccaaga 645
|||||| |||||| |||||||||| ||| |||||||||||||| |||||||||||||||
Sbjct 572 AGGAAGGAACAAGAGATCATGAGGGGAAA-AAAGAAGAAGAAATCGAAGATAAACCAAGA 630
Query 646 aagaagagaagaaaaaagTTCCGTTTACCGTGTTTTGCAGGATCCACTCTGCTTATGTCT 705
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct 631 AAGAAGAGAAGAAAAAAGTTTCGTTTACCATGTTTTGCAGGATCCACTCTGCTTATGTCT 690
Query 706 ATTATTGTTTTCATCATTCAATTGATTCAATCCAGaaaaaaaTGA 750
|||||||||||||| |||||| |||||||||||||||| ||||||
Sbjct 691 ATTATTGTTTTCATTATTCAACTGATTCAATCCAGAAATAAATGA 735
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36419756575
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5