BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339925
Length=1350
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77660.1 | Symbols: | Histone H3 K4-specific methyltransfer... 1434 0.0
> AT1G77660.1 | Symbols: | Histone H3 K4-specific methyltransferase
SET7/9 family protein | chr1:29185899-29187825 REVERSE
LENGTH=1765
Length=1765
Score = 1434 bits (776), Expect = 0.0
Identities = 847/881 (96%), Gaps = 5/881 (1%)
Strand=Plus/Plus
Query 1 ATGAGCCAAAAGAAACTGACCAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 326 ATGAGCCAAAAGAAACTGACGAGGACTCAATCGTCGTTACTCAGATCATCTCCGACGATT 385
Query 61 CGATCGTCGATTCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAATCTCT 120
||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 386 CGATCGTCGATCCAAAGCCTTTCTTCAATCACTGAATGTGATGACTTCAACGAAACCTCT 445
Query 121 CACCACCGCCGTGAACAAGATCTAGAAGCCGGTGAGAAAGAGGAGAAACAGAGGAGGAGA 180
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 446 CACCACCGCCGTGAACAAGATCTCGAAGCCGGTGAGAAAGAGGAAAAACAGAGGAGGAGA 505
Query 181 AAACCGGTTAAATCATTCGGGTCGATTAACCGAATTAAACCGGGTCTCGCATTCACACTC 240
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 506 AAACCGGTTAAATCATTCGGGTCAATGAACCGAATTAAACCGGGTCTCGCATTCACACTC 565
Query 241 GCCTGTCTCTCTTTCCTAAGTCTCTCATCTTTCTTACTATTCTTCATTGATGAGATTTTC 300
|| |||||||||||||| |||||||||||||||||||| |||||| ||||||||||||||
Sbjct 566 GCTTGTCTCTCTTTCCTGAGTCTCTCATCTTTCTTACTGTTCTTCGTTGATGAGATTTTC 625
Query 301 ACGTCGGAGAATCTGTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCATCG 360
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 626 ACGTCGGAGAATCTCTTACTAGGTTTGATTTTCGTCGCTCTTGCTCTGTTCTTCGCGTCG 685
Query 361 AGAAACATGGCGGTTATTAACCAAACCGTAATCGCAATCAAACAGATTCGCGTAAGGTCT 420
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 686 AGAAACATGGCGGTTATTAACCAAACCGTAATCGCAATCAAGCAGATTCGTGTAAGGTCT 745
Query 421 CGAATCAAACACAAACATAAACCGGTTCAATGGTACATCGGAGATACAAAACCGGAACCG 480
|||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 746 CGAATCAAACACAAACCGAAACCGGTTCAATGGTACATCGGAGATTCAAAACCGGAACCG 805
Query 481 ATCAAAGAAGAAGCACA-AAGACTGGTCGTGAAAGAAGGAGTTCAATAT-TTTAGCAATG 538
||||||||||||| | | |||||| ||||| |||||||||||||||| | ||||||||||
Sbjct 806 ATCAAAGAAGAAG-AAACAAGACTTGTCGTTAAAGAAGGAGTTCAAT-TCTTTAGCAATG 863
Query 539 GAGA-TTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTGTACTATT 597
|||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||
Sbjct 864 GAGATTTCTACGAAGGTGAATTCAACAGAGGGAAGTGTAACGGAAGTGGAGTTTATTATT 923
Query 598 ATTTCGTTAATGGAAGATATGAAGGAGATTGGATCAATGGAAGATACGATGGTTATGGAA 657
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 924 ATTACGTTAATGGAAGATATGAAGGAGATTGGATCAATGGAAGGTACGATGGTTATGGAA 983
Query 658 TCGAGTGTTGGTCTAAAGGAAGTAAATATAAAGGACAGTATAAGCAAGGACTTAGGCATG 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 984 TCGAGTGTTGGTCTAAAGGAAGTAAATATAAAGGACAGTATAAGCAAGGACTTAGACATG 1043
Query 718 GTTATGGAGTTTACTGGTTTTACACCGGAGATTCTTACTCCGGTGAATGGTTTAACGGTC 777
||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1044 GTTTTGGAGTTTACTGGTTTTACACCGGAGATTCTTACTCTGGTGAATGGTTTAACGGTC 1103
Query 778 AAAGCCATGGCTTTGGTGTTCAAACTTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTCA 837
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1104 AAAGCCATGGCTTTGGAGTTCAAACTTGTGCTGATGGAAGCTCTTTTGTCGGAGAATTCA 1163
Query 838 AATTTGGTGTCAAACATGGACTTGGTTCTTACCATTTCAGG 878
|||||||||||||||||||||||||||||||||||||||||
Sbjct 1164 AATTTGGTGTCAAACATGGACTTGGTTCTTACCATTTCAGG 1204
Score = 627 bits (339), Expect = 1e-178
Identities = 373/390 (96%), Gaps = 0/390 (0%)
Strand=Plus/Plus
Query 961 AGGAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTCATGGATTTGGTGTT 1020
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1202 AGGAATGGAGATAAGTATGCAGGAGAGTATTTTGGAGACAAGATTCATGGATTTGGTGTT 1261
Query 1021 TACCATTTCGCTAATGGTCATTATTACGAAGGAGCTTGGCATGAAGGTCGTAAACAAGGC 1080
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1262 TACCATTTCGCTAATGGTCACTATTACGAAGGAGCTTGGCATGAAGGTCGTAAACAAGGC 1321
Query 1081 TATGGCACGTATAGATTCAGAACCGGTGATATCAAATCCGGTGAATGGGACGATGGTAAT 1140
||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct 1322 TATGGCACGTATAGATTTAGAACCGGTGATATCAAATCCGGTGAATGGGATGATGGTAAT 1381
Query 1141 CTCGTAAACCATCTTTCTCCAGACTCTGACCCGGTTCGTAGAGCGGTTCAGAGTGCTCGA 1200
||||| ||||||||| || ||||||||||||||||||||| |||||||||||||| |||
Sbjct 1382 CTCGTTAACCATCTTCCTTTAGACTCTGACCCGGTTCGTAGGGCGGTTCAGAGTGCACGA 1441
Query 1201 GAGAGAGCGAAGAATGGAGTGAATCAGAGACGGGTCGATGAGTATGTGATACGAGCTGTG 1260
|| ||||| |||||||||||||||||||||||| |||||||| | |||||||||||||||
Sbjct 1442 GAAAGAGCAAAGAATGGAGTGAATCAGAGACGGATCGATGAGCAGGTGATACGAGCTGTG 1501
Query 1261 GCTGCGGCCAATAAAGCTGCGACGGCTGCTAGAGTTGCAGCTGTGAAAGCCGTTCAAAAT 1320
||||| || ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1502 GCTGCAGCTAATAAAGCTGCGACGGCTGCTAGAGTTGCAGCTGTGAAAGCAGTTCAAAAT 1561
Query 1321 CAAATGGATGGTAAAATTTGTGACAATTAA 1350
||||||||||||||||||||||||||||||
Sbjct 1562 CAAATGGATGGTAAAATTTGTGACAATTAA 1591
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66465521580
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5