BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339926
Length=1203
Score E
Sequences producing significant alignments: (Bits) Value
AT1G77670.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent t... 1862 0.0
> AT1G77670.1 | Symbols: | Pyridoxal phosphate (PLP)-dependent
transferases superfamily protein | chr1:29188901-29190975 REVERSE
LENGTH=1539
Length=1539
Score = 1862 bits (1008), Expect = 0.0
Identities = 1139/1204 (95%), Gaps = 2/1204 (0%)
Strand=Plus/Plus
Query 1 ATGACCACATTTTCGACTCAGAACGAGTCAACTCAGAAACCCGTCCAGGTGGCGAA-ACG 59
||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||| | |
Sbjct 195 ATGACCACAGTTTCGACTCAGAACGAGTCTACTCAAAAACCCGTCCAGGTGGCGAAGA-G 253
Query 60 ATTAGAGAAGTTCAAGACTACGATTTTCACTCAAATGAGCATATTGGCTGTTAAACACGG 119
||||||||||||||||||||| |||||||||||||||||||||||||| |||||||| ||
Sbjct 254 ATTAGAGAAGTTCAAGACTACTATTTTCACTCAAATGAGCATATTGGCAGTTAAACATGG 313
Query 120 AGCGATCAATTTAGGTCAAGGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGC 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 314 AGCGATCAATTTAGGCCAAGGCTTTCCCAATTTCGACGGTCCTGATTTTGTTAAAGAAGC 373
Query 180 TGCGATCCTAGCTATTAAAGATGGTAAAAACCAGTATGCTCGTGGATACGGCGTTCCTGA 239
|||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 374 TGCGATCCAAGCTATTAAAGATGGTAAAAACCAGTATGCTCGTGGATACGGCATTCCTCA 433
Query 240 GCTCAATTCTGCTATAGCTGCGCGGTTTCGTGAAGATACGGGTCTTGTTGTTGATCCGGA 299
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 434 GCTCAACTCTGCTATAGCTGCGCGGTTTCGTGAAGATACGGGTCTTGTTGTTGATCCTGA 493
Query 300 GAAAGAAGTTACTGTTACGTCTGGCTGCACAGAAGCCATAGCTGCAGCTATGTTGGGATT 359
|||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| ||
Sbjct 494 GAAAGAAGTTACTGTTACATCTGGTTGCACAGAAGCCATAGCTGCAGCTATGTTGGGTTT 553
Query 360 AATAAACCCTGGCGACGAAGTCATTCTCTTTGCGCCATTCTATGATTCTTATGAAGCGAC 419
|||||||||||| || ||||||||||||||||| || || |||||||| |||||||| ||
Sbjct 554 AATAAACCCTGGTGATGAAGTCATTCTCTTTGCACCGTTTTATGATTCCTATGAAGCAAC 613
Query 420 GCTCTCTATGGCTGGTGCTAAAATAAAAGGTATCACTTTACGTCCACCGGACTTCTCAAT 479
||||||||||||||||||||| ||||||| |||||||||||||||||||||||||| ||
Sbjct 614 ACTCTCTATGGCTGGTGCTAAAGTAAAAGGAATCACTTTACGTCCACCGGACTTCTCCAT 673
Query 480 CCCTTTGGATGAGCTCAAAGCTGCGGTAACTAACAAGACCCGAGCCATCCTCATGAACAC 539
||||||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||||
Sbjct 674 CCCTTTGGAAGAGCTTAAAGCTGCGGTAACTAACAAGACTCGAGCCATCCTTATGAACAC 733
Query 540 TCCGCACAACCCAACCGGGAAGATGTTCACGAGAGAGGAGCTTGAAACCATTGCATCTCT 599
|||||||||||| ||||||||||||||||| || ||||||||||||||||||||||||||
Sbjct 734 TCCGCACAACCCGACCGGGAAGATGTTCACTAGGGAGGAGCTTGAAACCATTGCATCTCT 793
Query 600 CTGCATTGAAAACGATGTGCTTGTGTTCTCGGATGAAGTATACGATAAGCTTGCGTTTGA 659
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 794 CTGCATTGAAAACGATGTGCTTGTGTTCTCGGATGAAGTATACGATAAGCTTGCGTTTGA 853
Query 660 AATGGATCACATTTCCATAGCTTCCCTTCCCGGTATGTACGAAAGAACCGTGACCATGAA 719
||||||||||||||| |||||||| |||||||||||||| |||||||| |||||||||||
Sbjct 854 AATGGATCACATTTCTATAGCTTCTCTTCCCGGTATGTATGAAAGAACTGTGACCATGAA 913
Query 720 TTCCCTGGGAAAGACTTTCTCTTTAACCGGATGGAAGATCGGCTGGGCGATTGCACCGCC 779
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 914 TTCCCTGGGAAAGACTTTCTCTTTAACCGGATGGAAGATCGGCTGGGCGATTGCGCCGCC 973
Query 780 TCATCTGACTTGGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACACC 839
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 974 TCATCTGACTTGGGGAGTTCGACAAGCACACTCTTACCTCACATTCGCCACATCAACACC 1033
Query 840 AGCACAGTGGGCAGCCGTTGCAGCTCTCAAGGCTCCAGAGTCTTACTTCAAAGAGCTGAA 899
|||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1034 AGCACAATGGGCAGCCGTTGCAGCTCTCAAGGCACCAGAGTCTTACTTCAAAGAGCTGAA 1093
Query 900 AAGAGATTACGCGGCGAAAAAGGAGATTCTGGTGAAGGGTTTGAAAGAAGTCGGGTTTAA 959
|||||||||| | ||||||||||| |||||| ||||||||||| |||||||| ||||
Sbjct 1094 AAGAGATTACAATGTGAAAAAGGAGACTCTGGTTAAGGGTTTGAAGGAAGTCGGATTTAC 1153
Query 960 AGTGTTCCCGTCGAGCGGGACTTACTTTGTAACTGCGGATCACACGCCATTTGGATTGGA 1019
||||||||| |||||||||||||||||||| ||| |||||||| ||||||||| ||||
Sbjct 1154 AGTGTTCCCATCGAGCGGGACTTACTTTGTGGTTGCTGATCACACTCCATTTGGAATGGA 1213
Query 1020 GAACGATGTCGCCTTCTGTGAGTATCTTATTGAAGAAGTTGGGGTCGTTGCGATCCCGAC 1079
||||||||| || |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1214 GAACGATGTTGCTTTCTGTGAGTATCTTATTGAAGAAGTTGGGGTCGTTGCGATCCCAAC 1273
Query 1080 TAGTGTCTTTTATCTGAATCCAGAAGAAGGGAAGAAATTGGTTAGGTTTGCGTTCTGTAA 1139
|| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 1274 GAGCGTCTTTTATCTGAATCCAGAAGAAGGGAAGAATTTGGTTAGGTTTGCGTTCTGTAA 1333
Query 1140 AGACGAAGAGACGTTGCGTGGTGCAATTGAGAGGATGAAGCAGAAGCTAAAGAGAAAAGT 1199
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1334 AGACGAAGAGACGTTGCGTGGTGCAATTGAGAGGATGAAGCAGAAGCTTAAGAGAAAAGT 1393
Query 1200 CTGA 1203
||||
Sbjct 1394 CTGA 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59086041465
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5