BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg339978
Length=948
Score E
Sequences producing significant alignments: (Bits) Value
AT1G78210.1 | Symbols: | alpha/beta-Hydrolases superfamily pro... 1434 0.0
> AT1G78210.1 | Symbols: | alpha/beta-Hydrolases superfamily protein
| chr1:29422716-29424375 REVERSE LENGTH=1130
Length=1130
Score = 1434 bits (776), Expect = 0.0
Identities = 888/942 (94%), Gaps = 7/942 (1%)
Strand=Plus/Plus
Query 1 ATGACAGGtttttttAGCTTGTCTCAAGCAATAGAACGAACTTACAAATCCGGTTTCAAA 60
|||||||||| |||||||||||| ||||| |||||||||||||||||||||| ||||||
Sbjct 82 ATGACAGGTTGCTTTAGCTTGTCTGAAGCATTAGAACGAACTTACAAATCCGGGTTCAAA 141
Query 61 AGATCCGGTCTACGACCCGTAACCATCGATTTGAAAGATGGAACCGTAGTCAACTTTTGG 120
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 142 AGATCCGGTCTACGACCCGTAACCATCGACTTGAAAGATGGAACCGTAGTCAACTTTTGG 201
Query 121 GTATCCAAAACCCAACCCGAGTCCAAACCCAAACCCAATCTCCTCCTCATCCACGGCCTC 180
|||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||
Sbjct 202 GTATCCAAAACCAAACCCGAATCCAAACCCAAACCTAATCTCCTCCTCATCCACGGCCTC 261
Query 181 GGAGCTACTGCCATCTGGCAATGGTACGACGTAGCTCGACGTCTCTCTCGTCATTTCAAC 240
|||||||||||||||||||||||||||||||||||||| |||||||| ||| ||||||||
Sbjct 262 GGAGCTACTGCCATCTGGCAATGGTACGACGTAGCTCGCCGTCTCTCACGTTATTTCAAC 321
Query 241 CTCTATATCCCCGACCTCGTCTTCTTCGGCGGATCCTCCACGACCCGACCCGAAAGATCC 300
||||| ||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 322 CTCTACATCCCCGACCTAGTCTTCTTCGGCGGATCTTCCACGACCCGACCCGAAAGATCC 381
Query 301 GATATCTTT-CAGGCCCAAACACTCATGCGGGCCTTAGAAGCCCAATCCGTGAAAAAATT 359
||||| ||| || |||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 382 GATAT-TTTCCAAGCCCAAACACTCATGCGGGCCTTAGAAGCCCAATCCGTCAAAAAGTT 440
Query 360 CAGCCTCGTCGGTCTTAGCTACGGCGGATTCGTGGGTTATCGGATGGCGGCGATGTACGC 419
|||||||||||||||||||||||||||||||| |||||||| |||||| ||||||||||
Sbjct 441 TAGCCTCGTCGGTCTTAGCTACGGCGGATTCGTTGGTTATCGAATGGCGTCGATGTACGC 500
Query 420 AGACGCCGTGGAG-AGAGTTGTGATATGCTGCGCCGCCGTGTGCGTGGAGGAGAAAGATA 478
|||||| |||||| || || ||||||||||||||||||||||||||||||||||||||||
Sbjct 501 AGACGCGGTGGAGAAG-GTGGTGATATGCTGCGCCGCCGTGTGCGTGGAGGAGAAAGATA 559
Query 479 TGAAAGCCGGCGTTTTCAAGGTGTCGGATCTTGATGAAGCTTCGAAGATTCTTGTGCCGG 538
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 560 TGAAAGCCGGTGTTTTCAAGGTGTCGGATCTTGATGAAGCTTCGAAGATTCTTGTGCCGG 619
Query 539 AATCTGTGAAAAAGCTCAGGGAACTTATGGGTTACATCTTTTACAAGCCGGCGTTGGCGA 598
| ||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||| |
Sbjct 620 AGTCTGTGAAAAAGCTCCGGGAACTTATGGGTTACATATTTTACAAACCGGCGTTGGCAA 679
Query 599 GACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATGCTTTGACAAGAGATAATA 658
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 680 GACTGGTTCCTACTTGTCTTCTCCATGATTTCATCGAACATGCTTTGACAAGAGATAATA 739
Query 659 TGGAAGAGAAGAGAGAACTGATCAAAGCCATACCAAAAGACAGAATAATCTCAGAGATTC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 740 TGGAAGAGAAGAGAGAACTGATCAAAGCCATACCAAAAGACAGAATAATCTCAGAGATTC 799
Query 719 CAAAGCTCACACAGCCAACGTTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGG 778
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 800 CAAAGCTCAAACAGCCAACATTGATAATATGGGGAGAGCATGATCAAGTGTTCCCATTGG 859
Query 779 AGATGGGCAAGAGACTTGAGAAACATATAGGCGATAATGGGAGGCTCGTCATCATCAAGA 838
|||||||||||||||||||||| ||| |||| |||||||||| ||||| ||||||||||
Sbjct 860 AGATGGGCAAGAGACTTGAGAAGCATGTAGGAGATAATGGGAAACTCGTTATCATCAAGA 919
Query 839 GAACTGGTCATATCTTTAACTTCGAGAGACCCAAAACGTTTCTTAAACTGCTCAAATCTT 898
||||||||||||||||||||||||||| ||| |||| |||| | ||||| ||||||||||
Sbjct 920 GAACTGGTCATATCTTTAACTTCGAGAAACCTAAAAAGTTTATCAAACTTCTCAAATCTT 979
Query 899 TTCTTTTGGAGACTA--AA-CCACAGATTCCTATCTCTAATG 937
||||| | ||||||| || |||||||||||| |||||||||
Sbjct 980 TTCTTCTAGAGACTAGTAAACCACAGATTCCTGTCTCTAATG 1021
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46366117681
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5