BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340056
Length=1614
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79030.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 2261 0.0
> AT1G79030.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr1:29730767-29733611 REVERSE LENGTH=1882
Length=1882
Score = 2261 bits (1224), Expect = 0.0
Identities = 1304/1343 (97%), Gaps = 4/1343 (0%)
Strand=Plus/Plus
Query 1 ATGGAGGATATTGGTTTGGTTAAGCAAGGTTGGAAATGGATGCAATCTCAGAAACATATG 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 42 ATGGAGGATATTGGGTTGGTTAAGCAAGGTTGGAAATGGATGCAATCTCAGAAACATATG 101
Query 61 TGCTCCGATGCTTGTTCTGCGATGCGATGCTTTGGGGAGAAGATTGGAGGGCTTGTGGAG 120
|||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 102 TGCTCCGATGCTTGTTCTGCGATGCGATGCTTTGGGGAGATGATAGGAGGGCTTGTGGAG 161
Query 121 CGTCATTGGCCATTGGTGTGTAGTGGATGTGGGAAGCTATTAGGGTTGCTTC-GCTTGTC 179
||||| |||||||||||||||||||||||||||||||||||||| ||||||| | |||||
Sbjct 162 CGTCACTGGCCATTGGTGTGTAGTGGATGTGGGAAGCTATTAGGATTGCTTCAG-TTGTC 220
Query 180 AATTCTTTATTGGAAAGACTGCATTTTTAGGGGTTTCCATTGCAGCGCCAAATTGGGTTC 239
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 221 AGTTCTTTATTGGAAAGACTGCATTTTTAGGGGTTTCCATTGCAGCGCCAAATTGGGTTC 280
Query 240 AGCTGCTTTGCTTCTGATAATGTGGAGTTGCTTCCTTAGCTTGACTTCCTTTTCTTGCTT 299
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 281 AGCTGCTTTGCTTCTGATAATGTGGAGTTGCTTCCTTAGCTTGACTTCCTTATCTTGCTT 340
Query 300 GGTTTATGTTCTCCTCAGTATGGGAGCTGCTGCAGCTGTTGTTCTGAACTTGGGTTGCAC 359
| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 341 GCTCTATGTTCTCCTTAGTATGGGAGCTGCTGCAGCTGTTGTTCTGAACTTGGGTTGCAC 400
Query 360 TCCTGGGCTCTTTATTGTAGGACTATTTGGAATTTTGATTTTATGGATGTATGCAAACTT 419
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 401 TCCTGGGCTCTTTATCGTAGGACTATTTGGAATTTTGATTTTATGGATGTATGCAAACTT 460
Query 420 TTGGATCACTGGAACATTGTTTATAGTCGGAGGCTATTTATTCTCCTTAAATCATGCCCG 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 461 TTGGATCACTGGAACATTGTTTATAGTCGGAGGCTATTTATTCTCCTTAAATCATGCTCG 520
Query 480 CGTGGTGGTTCTAATGGCGGGCTTATATGCCATGTATTGTGTCAAAGTCAGACTTGGATG 539
|||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 521 CGTGGTGGTTCTTGTGGCGGGCTTATATGCGATGTATTGTGTCAAAGTCAGACTTGGATG 580
Query 540 GCTTGGTCTTTTCCTCTCAATAAATCTTGCCTTCTTGTCCAACGATATATTAAATTGTCT 599
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 581 GCTTGGTCTTTTCCTCTCAATAAATCTTGCTTTCTTGTCCAACGATATATTAAATTGTCT 640
Query 600 TCTTCAATGGTGTGACAATCTAAGTGAAAAACCACAACACGATGAACCAAAGAAAGCGAA 659
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 641 TCTTCAATGGTGTGACAATCTAAGTGAAAAACCACAACACGAGGAACCAAAGAAACCGAA 700
Query 660 AGAAACAATCATAGAAGAAGACTATTCAGGGGAATTTGAGTATCCTTCAGTTCCTGTC-A 718
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
Sbjct 701 AGAAACAATCATAGAAGAAGACTATTCAAGGGAATTTGAGTATCCTTCAGTTCCTGTCGA 760
Query 719 ATGATGAAACCGAGACAAAGATTCACGAGAATAAGTCGTCTGCTAAACCAACTGCGCCTT 778
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 761 A-GATGAAACCGAGACAAAGATTCACGAGAATAAGTCTTCTGCTAAACCAACTGCGCCTT 819
Query 779 CTACTGTTGTTAATACCGTAAAGGAGATTTCTAGTGTTAAAATAGTCAAAATAGAAGAAT 838
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
Sbjct 820 CTACTGTTGTTAATACCGTAAAGGAAATTTCTAGTGTTAAAATAGTCAAAATAGAAGAGT 879
Query 839 CAAGTTCAGCTGATGAAATGAAGAGAATACTGAATAGTTTGAATCATTATGAAGCACTGG 898
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 880 CAAGTTCAGCTGATGAAATGAAGAGAATACTGAATAGTTTGAATCATTATGAAGCATTGG 939
Query 899 GGGTCCCTCGGCATAAAAAGATCGATGCTGCGGTGCTTAAGAAAGAGTATAGAAAGAAGG 958
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 940 GGGTCCCTCGGCATAAAAAGATCGATGCTGCGGTGCTTAAGAAAGAGTATAGGAAGAAGG 999
Query 959 CAATGTTGGTTCATCCCGATAAAAATATGGGGAGTCCATTGGCAAGTGAATCGTTCAAGA 1018
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1000 CAATGTTGGTTCATCCTGATAAAAATATGGGGAGTCCATTGGCAAGTGAATCATTCAAGA 1059
Query 1019 AACTTCAAAGTGCTTACGAGGTTCTTTCTGATTTCGTAAAGAAGAGAGATTACGATGAGC 1078
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1060 AACTTCAAAGTGCTTACGAGGTTCTATCTGATTTCGTAAAGAAGAGAGATTACGATGAGC 1119
Query 1079 AATTACGAAAAGAAGAATCTAGGACTAGGAGTGTTTGTCAGACATCTCATGCTTCTTCGC 1138
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1120 AACTACGAAAAGAAGAATCTAGGACTAGGAGTGTTTGTCAGACATCTCATGCTTCTTCGC 1179
Query 1139 ATCAGAGTGGTCCTGATTATCGATCTGAAGAGTCGAGGCGGATACACTGTACAAAGTGTG 1198
||||||||||||||||||||||||| || ||||| |||||||||||||||||||| ||||
Sbjct 1180 ATCAGAGTGGTCCTGATTATCGATCAGATGAGTCAAGGCGGATACACTGTACAAAATGTG 1239
Query 1199 GTAATTCACACATATGGATATGTACCAATAGGACAAAGGCAAAGGCAAGATGGTGCCAGG 1258
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1240 GTAATTCACACATATGGATATGTACCAATAGGACAAAAGCAAAGGCAAGATGGTGCCAGG 1299
Query 1259 ATTGTGGTCAATATCATCAAGCAAAAGATGGAGATGGATGGGTCGAACTCAAAGGGACAT 1318
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1300 ATTGTGGCCAATATCATCAAGCAAAAGATGGAGATGGATGGGTCGAACTCAAAGGGACAT 1359
Query 1319 TACCCTTTGAGAGAGCACATAAG 1341
||||||| |||||||||||||||
Sbjct 1360 TACCCTTCGAGAGAGCACATAAG 1382
Score = 453 bits (245), Expect = 2e-126
Identities = 265/275 (96%), Gaps = 0/275 (0%)
Strand=Plus/Plus
Query 1340 AGGGAATGGCTTGTAGACCAAACACGCATAGACCAAGTTTTCATGTGAACATGGTTGGGT 1399
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1453 AGGGAATGGCTTGTAGACCAAACACGCATAGACCAAGCTTTCATGTGAACATGGTTGGGT 1512
Query 1400 TAGAAAAGACAACACAGAGATCAAACTCAAGTAGGTTCCCTTGGGATCTAGATGTGGAGA 1459
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1513 TAGAAAAGACAACACAGAGATCAAACTCAAGTAGGTTCCCATGGGATCTAGATGTGGAGA 1572
Query 1460 TGATGGATGAGGACGAAGAAGAGTTTGAGCTATGGCTTCAACAAGCTCTTGCTTCAGGTC 1519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1573 TGATGGATGAGGACGAAGAAGAGTTTGAGCTATGGCTTCAACAAGCTCTTGCTTCAGGTC 1632
Query 1520 TCTTCTGCGAAACCTCGAAACGCAGAAAAAGCTGGAGCCCGTTCAAGTTAAGCCAGATGA 1579
|||||||||||||||| ||||| ||||||||||||||||| |||||||| |||||||||
Sbjct 1633 TCTTCTGCGAAACCTCAAAACGTAGAAAAAGCTGGAGCCCTTTCAAGTTGGGCCAGATGA 1692
Query 1580 AAAGCAAGAAGCAATGGCGAAGAACATCCACTTGA 1614
|||||||||| || ||||||||||| |||||||||
Sbjct 1693 AAAGCAAGAAACAGTGGCGAAGAACTTCCACTTGA 1727
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 79718465460
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5