BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340086
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase ... 1792 0.0
> AT1G79330.1 | Symbols: AMC6, ATMCP2B, ATMC5, MC5 | metacaspase
5 | chr1:29838653-29840137 FORWARD LENGTH=1302
Length=1302
Score = 1792 bits (970), Expect = 0.0
Identities = 1084/1140 (95%), Gaps = 4/1140 (0%)
Strand=Plus/Plus
Query 1 ATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGGACCAAGGCGGAGCTACGG 60
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 70 ATGGCGAAGAAAGCTGTGTTGATTGGAATCAATTACCCTGGAACCAAGGCGGAGCTACGG 129
Query 61 GGCTGCGTCAACGATGTCCGGAGGGTGCACAAATGTCTCGTCGATCGGTTTGGATTCTCC 120
|| |||||||||||||||||||| |||||||||| |||||| ||||||||||||||||||
Sbjct 130 GGATGCGTCAACGATGTCCGGAGAGTGCACAAATCTCTCGTGGATCGGTTTGGATTCTCC 189
Query 121 GAGAGAAACATCACTGAGCTGATTGACACTGACGACTCTTCCACCAAACCTACAGGGAAG 180
|||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 190 GAGAGAAACATCACTGAGCTGATTGATACTGACGAGTCTTCCACCAAACCTACAGGGAAG 249
Query 181 AATATTCGAAGGGCGTTGTTGAATCTAGTTGAGTCTGCTAAATCC-GGCGATGTTCTTGT 239
|||||||||||||| ||||||||||||||||| || |||||| || || |||||||||||
Sbjct 250 AATATTCGAAGGGCATTGTTGAATCTAGTTGAATCCGCTAAA-CCGGGTGATGTTCTTGT 308
Query 240 CGTCCATTACAGTGGACACGGGACGAGGTTGCCGGCGGAGACTGGAGAAGACGATGATAC 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 309 CGTCCATTACAGTGGACACGGGACGAGGTTGCCGGCGGAGACTGGAGAAGACGATGATAC 368
Query 300 TGGATATGATGAGTGTATTGTTCCTTGTGATATGAATCTTATCACCGATGATGAGTTCAG 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 369 TGGTTATGATGAGTGTATTGTTCCTTGTGATATGAATCTTATCACCGATGATGAGTTTAG 428
Query 360 AGATCTTGTGGACAAGGTACCAAAGGAAGCACACATTACAATCATCTCAGACTCTTGTCA 419
|||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 429 AGATCTTGTGGAGAAAGTACCAAAGGAAGCACACATTACAATCATCTCAGACTCTTGTCA 488
Query 420 CAGTGGTGGTCTCATCGATGAAGCTAAAGAACAGATAGGAGAGAGCACGAAGAAGAAGCC 479
|||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||
Sbjct 489 CAGTGGTGGTCTCATCGATGAAGCTAAAGAGCAGATCGGAGAGAGCACGAAGAAGAAGCC 548
Query 480 AAAGAAAAAATCTGAAGGCTCTTCAGGACTTGGAATCAAAGGCTTTGCGCGTGAAGCTGT 539
||||||| |||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 549 AAAGAAAGAATCTGGAGGCTCTTCAGGACTTGGAATCAAAGGCTTTGTGCGTGAAGCTGT 608
Query 540 GGAAGAAGCATTGGAAACTCGAGTGATC-CACATTCCTCACCACAAAGATGAGAAAGaaa 598
|||||||||| ||||| || || |||| | |||||||||||||||||||||||||||
Sbjct 609 GGAAGAAGCACTGGAATCTAAAGGGATCGC-CATTCCTCACCACAAAGATGAGAAAGACG 667
Query 599 aaaaCAAGACTAAAGAGATTGAACTAGAAGATGGTGCAAAAGTCCATGTCGTAAACAAAT 658
||||||||||||||||| || ||||||||||||| ||||||||||||||||| |||||||
Sbjct 668 AAAACAAGACTAAAGAGCTTAAACTAGAAGATGGGGCAAAAGTCCATGTCGTGAACAAAT 727
Query 659 CTCTGCCTCTACAAACTCTAATCGATATCCTCAAGCAAAAAACAGGTAACGATAAAATCA 718
|||||||||||||||||||||||||||||||||||||||| ||||||||| || | |||
Sbjct 728 CTCTGCCTCTACAAACTCTAATCGATATCCTCAAGCAAAATACAGGTAACAATGATATCG 787
Query 719 AAGTAGGGGAAATCAGACCAACCCTTTTCAATGTGTTTGGAGACGATGCATCCCCAAAGG 778
|||| ||| |||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 788 AAGTTGGGAAAATCAGACCAACCCTTTTCAATGTGTTTGGAGAAGATGCATCCCCAAAGG 847
Query 779 TTAAGAAGTTCATGAAAGTGATTCTAACAAAGATGCAAGAAGGTAAAACTGAAGGTGGGG 838
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 848 TTAAGAAGTTCATGAAAGTGATTCTAACAAAGCTGCAAGAAGGTAAAACTGAAGGTGGGA 907
Query 839 TATTGGGAATGTTTGGGAAACTAGCTCAAGAGTTTCTTGAGCATAAACTAAACGATGATG 898
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 908 TATTGGGAATGATTGGGAAACTAGCTCAAGAGTTTCTTAAGCATAAACTAAACGATGACG 967
Query 899 AAGAGTATGTGAAACCCGCGATGCAGACACATGTTGGGAACAAGCAAGAGGTCTATGCAG 958
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 968 AAGAGTATGTGAAACCCGCGATGAAGACACATGTTGGGAACAAGCAAGAGGTCTATGCAG 1027
Query 959 GTGCGAGCAATGGTTCTCTTGCGGATAATGGTGTTTTGATTAGTGGTTGCCAAACAGATC 1018
| |||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||
Sbjct 1028 GCGCGAGCAATGGTTCTCTTGCGGATAACGGTATTTTGATTAGTGGTTGCCAAACAGATC 1087
Query 1019 AAACTTCTGCAGACGCGAGTCCTCAAGGTCATCCTGAAATGGCTTATGGAGCCTTCACCA 1078
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1088 AAACTTCTGCAGACGCGAGTCCTCAAGGTCATCCTGAAATGGCTTATGGAGCATTCACCA 1147
Query 1079 ATGTTGTGCAGATCATACTCGAGGAGACAAAGGGTAAGATTACATACAAAGAACTTGTTT 1138
||| ||||||||||||||| |||||||||||||||| |||||||||||||||||||||||
Sbjct 1148 ATGCTGTGCAGATCATACTTGAGGAGACAAAGGGTATGATTACATACAAAGAACTTGTTT 1207
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5