BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340150
Length=729
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80720.1 | Symbols: | Mitochondrial glycoprotein family pro... 1205 0.0
> AT1G80720.1 | Symbols: | Mitochondrial glycoprotein family protein
| chr1:30336138-30337565 FORWARD LENGTH=942
Length=942
Score = 1205 bits (652), Expect = 0.0
Identities = 700/724 (97%), Gaps = 0/724 (0%)
Strand=Plus/Plus
Query 6 TCGCTTCGTCAGATGTCTGAGAAGAACACTCTTTTCTAATTCGTCTCCTTCAATTGCTTA 65
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
Sbjct 1 TCGCTTCGTCAGATGTCTGAGAAGAACACTCTTTTCTAATTCGTCTCCTTCTATTGCTCA 60
Query 66 CCGGAGCCCTAGGATTGGTTTGCCCTCGAATCAAAATCCTAAATTTTTAATCAGCCGCAG 125
||||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||
Sbjct 61 CCGGAGCCCTAGGATTGGTTTGCCCACGAATCTAAATCCTAAAATTTTAATCAGCCGCAG 120
Query 126 ATGTCTGAGCTCCGGGAGTTACGTGTCAGAAATGCAGAAATCAGCTTTCCAGGGCAACAT 185
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 121 ATGTCTGAGCTCCGGGAGTTACGTCTCAGAAATGCAGAAATCAGCTTTCCAGGGCAACAT 180
Query 186 TTTACGACTGATCCGCAATGAGATTGAGTACGAACTCGATCACTCGCCTCCGCTTCAGCC 245
||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 181 TTTGCGACTGATCCGTAATGAGATTGAGTACGAACTCGATCACTCGCCTCCTCTTCAGCC 240
Query 246 TCCTGACAGTTTTGGTCCATTCACTGTGGATGAACGGCCTGGAGAGCAGTGGATTAGCTT 305
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 TCCTAACAGTTTTGGTCCATTCACTGTGGATGAACGGCCTGGAGAGCAGTGGATTAGCTT 300
Query 306 GAAAAGGAAATTTGGAGATAAAGAAGACATCAAAATTGAAGCAACCATGTTTGATAGATC 365
||||||||| ||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 301 GAAAAGGAATTTTGGGGATAAAGAAGACATCAAAATTGAAGCAACTATGTTTGATAGATC 360
Query 366 AGTTCCGACGTCAAAATCTACCAAAACTGAACCTGATTATATTCTTCACATCACTTTCAT 425
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 361 AGTTCCCACGTCAAAATCTACCAAAACTGAACCTGAATATATTCTTCACATCACTTTCAT 420
Query 426 TGTCAACATCTCCAAGGGTGGTGCTAGTGAAGTTTTAGAGATCATGTCTTCTGCTTGGCC 485
||||||||||||||||| |||||||| ||||| |||||||||||||| ||||||||||||
Sbjct 421 TGTCAACATCTCCAAGGCTGGTGCTACTGAAGCTTTAGAGATCATGTGTTCTGCTTGGCC 480
Query 486 AGATACCATAGAGATATCGAAGCTCTGCATTCGTAAAGGCATCAACACTTCAGCTTCTTC 545
||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||||
Sbjct 481 AGATACCATAGAGATATCGAAGCTCTGCATTCGTAGAGGCATCAACACTTCACCCTCTTC 540
Query 546 CTATGGTGGACCAGAGTTTGAGGAATTAGATGATCAGCTTCAAGACGCACTTTATCAATT 605
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 541 CTATGGTGGACCAGAGTTTGAGGAATTAGATGATCAGCTTCAAGACGCACTCTATCAATT 600
Query 606 TTTAGAGGAAAGAGGTATAAGCGACGAGCTTGCTGTTTTCTTGCATCGGTATATGAAGAA 665
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 601 TTTAGAGGAAAGAGGTATAAGCGACGAGCTTGCTGTTTTCTTGCATCGGTATATGAAGAA 660
Query 666 CAAAGGTAAAGCTGAGTACGTTAGATGGATGGAGAGCGTTAAATCTTATGTTGAGCAAAA 725
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 661 CAAAGGTAAAGCTGAGTACGTTAGATGGATGGAGAGCGTTAAATCCTATGTTGAGCAAAA 720
Query 726 ATAG 729
||||
Sbjct 721 ATAG 724
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 35364839488
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5