BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340192
Length=1158
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80290.2 | Symbols: | Nucleotide-diphospho-sugar transferas... 1448 0.0
> AT1G80290.2 | Symbols: | Nucleotide-diphospho-sugar transferases
superfamily protein | chr1:30188364-30189574 FORWARD LENGTH=1070
Length=1070
Score = 1448 bits (784), Expect = 0.0
Identities = 998/1097 (91%), Gaps = 31/1097 (3%)
Strand=Plus/Plus
Query 66 AACACCAACTAGTCAATCGGAATTGCAACTCTCTCCGTCTCGAGATCCCGATGCCGGAAC 125
||| |||||||||||||||||||| ||| ||||| | | ||||| | ||||||||||
Sbjct 1 AACTCCAACTAGTCAATCGGAATTCCAAATCTCT-AGAC-GGAGATTCTGATGCCGGAAT 58
Query 126 ACCATCAGCTCCTGCTTCTTCCGAGGTTGATATGGGAGT-TACTAGAAGT-AGGTTCTAT 183
|||||| | ||||||||| |||||||||||| | | | || ||||||| |
Sbjct 59 GCCATCA------G---CTTCCGAGGCTGATATGGGAGTCAAATCG--GTGAGGTTCTCT 107
Query 184 ATCTGGTTCCTGTTCCTCTTTGTTACGGATCTCGTGTCCTGCCGCACGCTCTCAGTGGAT 243
||||||||||| || || |||||||||||||||||| || ||||||||||||| ||||
Sbjct 108 ATCTGGTTCCT-TT--TCGTTGTTACGGATCTCGTGTTTTGTCGCACGCTCTCAGGGGAT 164
Query 244 CCGGATCCGTGTGATTCAATGAACCAGAGAGACTTTCAGAAACTTAGATCGGATCAAATC 303
|| ||||| |||||| ||| |||||||||||| ||||| ||||| ||||||||||| |||
Sbjct 165 CCAGATCCATGTGATGCAACGAACCAGAGAGAATTTCAAAAACTCAGATCGGATCAGATC 224
Query 304 ACCGTTCTAATCAACGGTTACTCTGAATACCGGATTCCTCTTCTCCAAACCATCGTGGCC 363
|||||||||||||| |||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 225 ACCGTTCTAATCAATGGTTACTCAGAATACCGGATTCCTCTTCTGCAAACCATCGTGGCC 284
Query 364 TCGTATTCTTCATCCTCAATCGTATCATCCATCTTAGTCCTATGGGGTAACCCTAGCACA 423
|| |||||||||||||| |||||||| |||||||||||||||||||||||||||||||||
Sbjct 285 TCTTATTCTTCATCCTCGATCGTATCCTCCATCTTAGTCCTATGGGGTAACCCTAGCACA 344
Query 424 CCTGATCAACTACTTGACCACTTGTATCAGAATCTCACTCAGTACTCGCCTGGTTCTGCT 483
|||||||||||||||||||| |||||||||||||| |||||||| |||||||||||||||
Sbjct 345 CCTGATCAACTACTTGACCAGTTGTATCAGAATCTGACTCAGTATTCGCCTGGTTCTGCT 404
Query 484 TCCATCTCTCTAATTCAGCAATCTTCTAGCAGCCTCAACGCCAGATTCCTCCCTCGTTCC 543
|||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 405 TCCATCTCTCTAATTCAGCAATCTTCGAGCAGCCTCAACGCTAGATTCCTCCCTCGTTCC 464
Query 544 TCTGTAGACACTCGTGCTGTTCTGATATGTGATGATGATGTCGAGATTGATCGGAGATCG 603
||||||||||||||||||||| |||||||||||||||| ||||||||||| | |||||||
Sbjct 465 TCTGTAGACACTCGTGCTGTTTTGATATGTGATGATGACGTCGAGATTGACCAGAGATCG 524
Query 604 TTGGAATTCGCATTTTCTGTGTGGAAGTCCAATCCTGATCATCTTGTAGGAACGTTTGTG 663
||||| || || ||||| ||||||||||| |||||||||| ||||||||||||||||||
Sbjct 525 TTGGAGTTTGCGTTTTCAGTGTGGAAGTCGAATCCTGATCGCCTTGTAGGAACGTTTGTG 584
Query 664 AGGTCACACGGTTTCGATTTGCAGGGCAAAGAGTGGATTTACACTGTGCATCCAGATAAA 723
|||||||||||||||||||||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 585 AGGTCACACGGTTTCGATTTGCAGGGGAAAGAGTGGATATACACTGTTCATCCAGATAAA 644
Query 724 TACTCCATCGTGCTGACCAAGTTCATGATGATGAAACAAGATTATCT-TTATGAGTATAG 782
||||| || ||| ||||||||||||||||||||||||| |||||||| || |||||||||
Sbjct 645 TACTCGATTGTGTTGACCAAGTTCATGATGATGAAACAGGATTATCTGTT-TGAGTATAG 703
Query 783 CTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCGAATGCGTAACTG 842
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 704 CTGCAAGGGAGGTGTGGAGATGGAGGAGATGAGGATGATTGTGGACCAAATGCGTAACTG 763
Query 843 CGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGT 902
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 764 CGAGGATATACTGATGAATTTTGTAGCTGCAGATAGGTTAAGGGCAGGGCCAATCATGGT 823
Query 903 TGGAGCAGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGAACAAGTAGTTGA 962
|||||| |||||||||||||||||||||||||||||||||||||||| | | | |
Sbjct 824 TGGAGCTGAGAGAGTTAGGGATTGGGGAGATGCGCGTAACGAAGAAGTA---G-A----A 875
Query 963 TGAGAGAGTAAGAGATGCAGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGG 1022
|||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct 876 -GAGAGAGTAAGAGACGTGGGATTGAGCAGTAGAAGAGTGGAACATAGGAAGAGAAGAGG 934
Query 1023 GAAGTGCATCAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGG 1082
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 935 GAATTGCATTAGGGAGTTTCATAGAGTTATGGGGAAGATGCCATTGATGTATAGTTATGG 994
Query 1083 TAAGGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGG-AAAGCTTGTGT 1141
||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||| |
Sbjct 995 TAAAGTTGTCAACTCTGTTGGGGAACAAGGATTGTGTCGTAAAGCCGGCAAA-CTTGTCT 1053
Query 1142 TTTGTGACCGAGATTGA 1158
||||||| |||||||||
Sbjct 1054 TTTGTGATCGAGATTGA 1070
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 56827016940
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5