BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340195
Length=1116
Score E
Sequences producing significant alignments: (Bits) Value
AT1G80240.1 | Symbols: | Protein of unknown function, DUF642 |... 1679 0.0
> AT1G80240.1 | Symbols: | Protein of unknown function, DUF642
| chr1:30171357-30172839 REVERSE LENGTH=1316
Length=1316
Score = 1679 bits (909), Expect = 0.0
Identities = 1042/1108 (94%), Gaps = 2/1108 (0%)
Strand=Plus/Plus
Query 10 TACCAAGAAGCAGCACTCCTCGTAGCTCTCCTCTTCGTTTCTTCGAATGTCGTCGTATCG 69
||||||||||||||||||||| |||||||||||||| | ||||||||||||||| |||||
Sbjct 47 TACCAAGAAGCAGCACTCCTCTTAGCTCTCCTCTTCATCTCTTCGAATGTCGTCTTATCG 106
Query 70 GCCCCAATCCGCGATGGTTTATTACCAAACGGTAACTTCGAGTTGGGTCCTAAACCCTCC 129
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 107 GCCCCAGTCCGCGATGGTTTATTACCAAACGGCAACTTCGAGTTGGGTCCTAAACCCTCC 166
Query 130 CAATTGAAAGGATCCGTGGTTAAGGAACGAACCGCCGTACCAAACTGGGACATAACCGGT 189
||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |||
Sbjct 167 CAAATGAAAGGATCCGTGGTTAAGGAACGAACCGCCGTACCAAACTGGAACATAATCGGC 226
Query 190 TTTGTGGAGTACATCAAATCCGGTCAGAAACAAGACGACATGGTCTTGGTCGTACCGCAG 249
|||||||||| ||| |||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 227 TTTGTGGAGTTCATTAAATCCGGTCAGAAACAAGATGACATGGTCTTGGTCGTACCGCAG 286
Query 250 GGTTCCTCCGCCGTTCG-CTTAGGCAACGAAGCCTCGATCTCCCAGAAAATCTCCGTCTT 308
||||||||||||||| | | |||||||||||||||| |||||||||||||| |||||| |
Sbjct 287 GGTTCCTCCGCCGTTAGAC-TAGGCAACGAAGCCTCAATCTCCCAGAAAATATCCGTCCT 345
Query 309 ACCCGGCCGTCTGTACTCAATCACGTTCAGCGCCGCTAGAACATGTGCTCAAGACGAGAA 368
||| ||||||||||||||||| ||||||||||||||| |||| || |||||||||||||
Sbjct 346 ACCTGGCCGTCTGTACTCAATAACGTTCAGCGCCGCTCGAACCTGCGCTCAAGACGAGAG 405
Query 369 ACTCAATATCTCCGTGACACACGAGTCAGGTGTGATCCCTATCCAGACAATGTACGGCAG 428
|||||||| |||||||| || |||||||||||||||||||||||||| |||||||||||
Sbjct 406 GCTCAATATATCCGTGACGCATGAGTCAGGTGTGATCCCTATCCAGACGATGTACGGCAG 465
Query 429 TGATGGTTGGGACTCATACGCATGGGCTTTTAAAGCTGGTGGCCCCGAAATCCATATCCG 488
|||||||||||||||||| |||||||||||||||||||||| ||||||||| | |||||
Sbjct 466 CGATGGTTGGGACTCATACTCATGGGCTTTTAAAGCTGGTGGTCCCGAAATCGAGATCCG 525
Query 489 GTTCCATAACCCGGGTGTTGAAGAGCACCCGGCTTGTGGACCGTTGATCGACGCCGTGGC 548
|||||||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||
Sbjct 526 GTTCCATAACCCTGGTGTTGAAGAGCACCCGGCTTGCGGACCTTTGATCGACGCCGTGGC 585
Query 549 TATCAAGGCTTTGTTCCCTCCCAGATTCTCTGGATACAATCTGATAAAGAATGGGAACTT 608
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct 586 TATCAAGGCTTTGTTCCCTCCCAGATTCTCTGGATATAATCTGATAAAGAATGGGAATTT 645
Query 609 CGAAGAAGGACCTTACGTGTTCCCCACGGCAAAATCGGGAGTACTGATCCCACCGTTCAT 668
||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||
Sbjct 646 CGAAGAAGGACCTTACGTGTTTCCCACGGCAAAATGGGGAGTACTGATCCCACCGTTCAT 705
Query 669 CGAGGACGATAACAGCCCATTGCCCGGTTGGATCATTGAGTCTCTCAAGGCCGTTAAGTA 728
||||||||||||||||||||||||||||||||| || ||||||||||| |||||||||||
Sbjct 706 CGAGGACGATAACAGCCCATTGCCCGGTTGGATGATCGAGTCTCTCAAAGCCGTTAAGTA 765
Query 729 CGTAGACAAAGCACACTTCGCTGTCCCCGAAGGACACCGAGCCATCGAGCTTGTTGGAGG 788
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 766 CGTAGACAAAGCACACTTCGCTGTCCCCGAAGGACACCGAGCCATCGAGCTTGTTGGAGG 825
Query 789 CAAAGAGAGCGCCATTTCTCAGATTGTAAGGACGTCACTGAACAAATTCTACGCCCTCAC 848
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 826 CAAAGAGAGCGCCATTTCTCAGATAGTGAGGACGTCACTGAACAAATTCTACGCCCTCAC 885
Query 849 GTTCAGCGTCGGAGACGCCAGAGACGGTTGTGAGGGACCGATGACAGTGGAGGCGTTCGC 908
||||| ||| ||||||||||||||||||||||||||||| |||| ||||| ||||||||
Sbjct 886 GTTCAACGTGGGAGACGCCAGAGACGGTTGTGAGGGACCAATGATTGTGGAAGCGTTCGC 945
Query 909 TGGACAAGGCAAGGTCATGGTGGATTACGCGTCTAAAGGGAAAGGCGGGTTTAGACGTGG 968
|||||| ||||||||||||||||| ||||| |||||||| ||||||||||||||||||||
Sbjct 946 TGGACAGGGCAAGGTCATGGTGGACTACGCTTCTAAAGGAAAAGGCGGGTTTAGACGTGG 1005
Query 969 GAGGCTTGTGTTCAAGGCGGTGTCGGCCAGGACACGTGTCACTTTCTTGAGCACGTTTTA 1028
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1006 GAGGCTTGTGTTCAAGGCAGTGTCGGCCAGGACACGTGTCACTTTCTTGAGCACGTTTTA 1065
Query 1029 CCATATGAAGAGTGATCACTCTGGCTCGCTATGTGGTCCGGTGATCGATGACATCAGGCT 1088
||| ||||| || |||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1066 CCACATGAAAAGCGATCACTCTGGCTCGCTATGTGGTCCGGTGATCGATGATGTTAGGCT 1125
Query 1089 GGTGGCGGTTCGGAAACTCCGAGGATGA 1116
||| |||||| |||||||||||||||||
Sbjct 1126 GGTAGCGGTTGGGAAACTCCGAGGATGA 1153
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54718594050
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5