BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340237
Length=993
Score E
Sequences producing significant alignments: (Bits) Value
AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein ... 1122 0.0
> AT1G79730.1 | Symbols: ELF7 | hydroxyproline-rich glycoprotein
family protein | chr1:30000538-30004005 REVERSE LENGTH=2011
Length=2011
Score = 1122 bits (607), Expect = 0.0
Identities = 660/686 (96%), Gaps = 2/686 (0%)
Strand=Plus/Plus
Query 157 ATGAATAATTCTCACAAGTCTCAGATGCCCAAGGGACACACGGAGGAGAAGAAGCCGACG 216
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 505 ATGAAAAATTCTCACAAGTCTCAGATGCCCAAGGGACACACCGAGGAGAAGAAGCCGACG 564
Query 217 CCTCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGC 276
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 565 CCCCTACTCACCACCGACAGGGTCGAGAATAGGTTAAAGAAACCAACCACCTTCATCTGC 624
Query 277 AAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCTCAGCTTAAGCTTATGACCATT 336
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 625 AAGCTCAAGTTCCGGAATGAGCTCCCTGACCCTAGTGCACAGCTTAAGCTTATGACCATT 684
Query 337 AAGCGGGATAAAGATCAATTTACAAAGTATACCATCACATCGCTGGAGAAATTATGGAAA 396
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 685 AAACGGGATAAAGATCAATTTACAAAGTATACCATCACATCCCTGGAGAAATTATGGAAA 744
Query 397 CCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTA 456
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 745 CCAAAAATCTTTGTCGAGCCTGATCTTGGAATACCCTTGGATCTGCTTGACCTAAGTGTG 804
Query 457 TACAACCCTCCCAAATTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACTGC-TGCGTGA 515
||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||
Sbjct 805 TACAACCCTCCCAAAGTCAAGGCACCTCTTGCCCCTGAAGATGAAGAACT-CTTGCGTGA 863
Query 516 TGATGATGCTATTACACCTATTAAGAAAGATGGCATCCGGAGAAAAGAAAGGCCAACTGA 575
|||||| ||| ||||||||||||||||||||||||||||||| |||||||| || |||||
Sbjct 864 TGATGACGCTGTTACACCTATTAAGAAAGATGGCATCCGGAGGAAAGAAAGACCTACTGA 923
Query 576 TAAAGGTGTTTCCTGGCTCGTGAAAACACAATACATTTCTTCTATTAATAATGAATCGGC 635
|||||| | || |||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 924 TAAAGGCATGTCTTGGCTCGTCAAAACACAATACATTTCTTCTATTAATAACGAATCGGC 983
Query 636 AAGACAGTCGCTAACTGAGAAACAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAA 695
||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 984 AAGACAGTCGCTAACGGAGAAGCAAGCAAAGGAACTGCGAGAGATGAAAGGAGGCATCAA 1043
Query 696 CATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGA 755
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1044 CATCTTGCACAATCTTAACAATAGAGAGAGACAAATCAAGGATATTGAAGCATCCTTTGA 1103
Query 756 AGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAGCTTGCAGCCGGTTGAAGTTTT 815
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 1104 GGCATGCAAGTCTCGACCAGTTCATGCCACCAATAAAAACTTGCAGCCGGTTGAAGTTCT 1163
Query 816 ACCACTGTTGCCATATTTTGATAGGT 841
||||||||||||||||||||||||||
Sbjct 1164 ACCACTGTTGCCATATTTTGATAGGT 1189
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48626654296
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5