BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340279
Length=825
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01660.1 | Symbols: | S-adenosyl-L-methionine-dependent met... 1288 0.0
> AT3G01660.1 | Symbols: | S-adenosyl-L-methionine-dependent methyltransferases
superfamily protein | chr3:245478-246508 FORWARD
LENGTH=952
Length=952
Score = 1288 bits (697), Expect = 0.0
Identities = 785/827 (95%), Gaps = 7/827 (1%)
Strand=Plus/Plus
Query 1 ATGGATTCTCTTCGATTCAACCTCCAACAATATCCAATCCAATTGAAACCCAGAATTCTC 60
||||||||||||||||||||||||||||||| |||| | ||||||||||| |||||||||
Sbjct 55 ATGGATTCTCTTCGATTCAACCTCCAACAATCTCCATTTCAATTGAAACCTAGAATTCTC 114
Query 61 CGACCAAGAATCACTAACAACATATCGAAA-CAAACCGATGAAACCGATCCTCGACCATC 119
|||||||||||||| ||||||||| ||| | || ||||||||||||||||||||||||
Sbjct 115 CGACCAAGAATCAC---CAACATATC-AAACCGAATCGATGAAACCGATCCTCGACCATC 170
Query 120 ATCCTCGGCCGGTAAGG-TCCAAAGGTTAGTACTTAACAACGAAGGTCGGACCAAACTAA 178
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 171 ATCCTCGGCCGGT-AGGATCCAAAGGTTAGTACTTAACAACGAAGGTCGGACCAAACTAA 229
Query 179 ACGCCGATCCTGACCGTGAGTTCTATTCATACCCACGGTTCGTGAACCACGTAGACGATG 238
||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| |||
Sbjct 230 ACGCCGATCCTGACCGTGAATTCTATTCATATCCACGGTTCGTGAACCACGTAGATGATA 289
Query 239 GTTTCATATCCTCCTTAACCGAACTATACAGAAACCGGTTGAGACCCGGTTCGATTGTAC 298
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 290 GTTTCATATCCTCCTTAACCGAACTATACAGAAACCGGTTGAGACCCGGTTCGACTGTAC 349
Query 299 TAGACTTGATGAGCTCATGGGTTAGCCATCTTCCAGAAGAAGTCAAGTACGAGAAAGTGG 358
| |||||||||||||||||||| |||||||||||||||||||| |||||||||||||| |
Sbjct 350 TTGACTTGATGAGCTCATGGGTCAGCCATCTTCCAGAAGAAGTGAAGTACGAGAAAGTAG 409
Query 359 TGGGGCATGGTCTTAACGCACAAGAGCTTGCACGTAACCCTAGACTCGATTACTTCTTCG 418
| |||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||
Sbjct 410 TAGGGCATGGTCTTAACGCACAGGAGCTTGCTCGTAACCCTAGACTCGATTACTTCTTCG 469
Query 419 TCAAGGATCTCAACGAAGATGAGAAATTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT 478
|||||||||| || |||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 470 TCAAGGATCTTAATGAAGATCAGAAGTTCGAGTTCGAAGACAAGTATTTCGACGCTGTTT 529
Query 479 TATGTGCTGTCGGTGTACAGTATCTACAACAACCCGAAAAGGTGTTTGCACAAGTGTATA 538
| ||| |||| ||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 530 TGTGTTCTGTTGGTGTACAGTATCTACAACAACCCGAAAAGGTGTTTGCAGAAGTGTATA 589
Query 539 GAGTGTTGAAACCGGGAGGTGTGTTGATAGTGAGTTTTAGCAATCGGATGTTTTATGAGA 598
||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||
Sbjct 590 GAGTGTTGAAACCGGGAGGAGTGTTGATAGTGAGTTTTAGCAACCGGATGTTTTATGAGA 649
Query 599 AAGCAATTAGGGTTTGGCGAGATGGAACCGAATACAGTCGGATCCAATTGGTGGTTCAGT 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 650 AAGCAATTAGGGTTTGGCGTGATGGAACCGAATACAGTCGGATCCAATTGGTGGTTCAGT 709
Query 659 ACTTTCAGTCTATTGAAGGGTTTACTCAGCCGGAGATCTTCCGGCAACAGCCTGGAGCTC 718
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 710 ACTTTCAGTCTATTGAAGGGTTTACTCAGCCGGAGATCATCCGGCAACAGCCTGGAGCTC 769
Query 719 AGATATCGGTTATGACTCGGCTTATGGGTTTTATTGGTTTAGCTTCTAGGCCCGATCCTT 778
||||||||||| |||||||||||||||||||||| ||||||||||||| |||||||||||
Sbjct 770 AGATATCGGTTTTGACTCGGCTTATGGGTTTTATCGGTTTAGCTTCTACGCCCGATCCTT 829
Query 779 TTAATGCTGTCATTGCTTATAAGAATTTCAAACCTCTTTATGAGTAA 825
|||||||||||||||||||||| |||||||||||| |||||||||||
Sbjct 830 TTAATGCTGTCATTGCTTATAAAAATTTCAAACCTATTTATGAGTAA 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40187317600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5