BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340294
Length=2298
Score E
Sequences producing significant alignments: (Bits) Value
AT3G01510.1 | Symbols: LSF1 | like SEX4 1 | chr3:198679-201742 ... 2939 0.0
AT3G01513.1 | Symbols: | unknown protein; CONTAINS InterPro DO... 662 0.0
> AT3G01510.1 | Symbols: LSF1 | like SEX4 1 | chr3:198679-201742
REVERSE LENGTH=2012
Length=2012
Score = 2939 bits (1591), Expect = 0.0
Identities = 1734/1803 (96%), Gaps = 10/1803 (1%)
Strand=Plus/Plus
Query 503 AAAAATCTCTATTGGATCGGTTT-ATGGCGTTTCTTCAACAAATCTCCGGTTTAGGAGCT 561
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 37 AAAAATCTCTATTGGATCGGTTTAATGGCGTTTCTTCAACAAATCTCCGGTTTAGGAGCT 96
Query 562 CTCGAACGATCTTCTCCGTCAATTTTGAACGGATCTTCATTCCGGAGCGGTAATGGCCGT 621
||||||||||||| |||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 97 CTCGAACGATCTTGTCCGTCAATTATGATCGGATCTTCATTCCGGAGCGGTAATGGCCGT 156
Query 622 CTATTCGACGGAAGAGGAATTGCGTACTTGGGTTCCAGGGAAAACG-TCGGATTCAACAG 680
|||||||||||||||||||||||||||||||||| |||||||| | |||||||||||||
Sbjct 157 GTATTCGACGGAAGAGGAATTGCGTACTTGGGTTCGAGGGAAAA-GTTCGGATTCAACAG 215
Query 681 ACGAAGCAGACTCGTTCTTAGAGTTGTTGCGATGTCTTCTTCTTCAT-CTCCGTTCAAAA 739
|||||| ||| ||||||||||||||||||||||||| |||||||| | ||||||||||||
Sbjct 216 ACGAAGAAGAGTCGTTCTTAGAGTTGTTGCGATGTCGTCTTCTTC-TACTCCGTTCAAAA 274
Query 740 TGAATTTGAATGAGTATATGGTCACTCTTGAGAAGCCTCTCGGGATTCGCTTCGCACTTT 799
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct 275 TGAATTTGAATGAGTATATGGTCACTCTCGAGAAGCCCCTCGGGATTCGCTTCGCACTTT 334
Query 800 CAGCAGATGGCAAGATCTTCGTCCACGCCATCAAAAAAGGGAGCAATGCGGAGAAGGCGA 859
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 335 CAGCAGATGGCAAGATCTTCGTCCACGCCATCAAAAAAGGGAGCAATGCGGAGAAGGCGA 394
Query 860 GAATCATCATGGTAGGAGATACACTCAAGAAGGCTAGTGATTCTTCTGGTGGTAGTCTTG 919
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 395 GAATCATCATGGTAGGAGATACACTCAAGAAGGCTAGTGATTCTTCTGGTGGTACTCTTG 454
Query 920 TGGAAATCAGGGATTTTGGTGATACCGAGAAGATGCTGGTAGAGAAAACAGGATCCTTTA 979
||||||||| |||||||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct 455 TGGAAATCAAGGATTTTGGTGATACCAAGAAGATGCTGGTAGAGAAAACTGGATCCTTTA 514
Query 980 GCCTTGTTCTTGAAAGACCTTTCTCTCCCTTTCCAATTCAGTATCTGCTTCATTTGAGCG 1039
||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||
Sbjct 515 GCCTTGTTCTTGAAAGACCATTCTCTCCCTTTCCCATTCAGTATCTGCTTCATTTGAGCG 574
Query 1040 ACCTTGATATGCTCTATAACAGAGGGCGTGTCTCCTTTGTTACTTGGAACAGAAACCTCT 1099
|||||||| |||||||||||||||||||||| || |||||||||||||||| ||||||||
Sbjct 575 ACCTTGATTTGCTCTATAACAGAGGGCGTGTGTCTTTTGTTACTTGGAACAAAAACCTCT 634
Query 1100 TATCATCGAATCTCAGAGCATC-TCA-A-GGCAGTGGGAACTCTGGCTATGCTGCATTTT 1156
|||||||||||||||||||||| ||| | |||||||| ||||||||||||||||| ||||
Sbjct 635 TATCATCGAATCTCAGAGCATCATCACAAGGCAGTGGTAACTCTGGCTATGCTGCGTTTT 694
Query 1157 CCTCCAAATTCTTTACTTCTCAGGGATGGAAACTTTTGACTAGACACAGCAATTCCTTTC 1216
||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 695 CCTCCAAATTCTTTACTCCTCAGGGATGGAAACTTTTGAATAGACAGAGCAATTCCTTTC 754
Query 1217 AGTCAGGGAC-ACAGAAGAACATTCTTTCTCCACCTATCAGTCCACTGGTCTCTGTCTTT 1275
|||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 755 AGTCAGGGACTA-AGAAGAACATTCTTTCTCCACCTATCAGTCCACTGGTCTCTGTCTTT 813
Query 1276 TCTGAAGAAGTTCCTGGAGATGGTGAATGGGGTTATGGGAATTTCCCTTTAGAGGAATAC 1335
|| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 814 TCAGAAGATGTTCCTGGAGATGGGGAATGGGGTTATGGGAATTTCCCTTTAGAGGAATAC 873
Query 1336 ATCAAAGCCCTTGACCGATCAAAAGGAGAGCTTTCCTATAACCATGCTCTTGGAATGCGC 1395
||||||||||||||||| || |||||||||||||| ||||||||||||||||||||||||
Sbjct 874 ATCAAAGCCCTTGACCGTTCTAAAGGAGAGCTTTCTTATAACCATGCTCTTGGAATGCGC 933
Query 1396 TACAGTAAGATTACAGAGCAAATATATGTTGGCTCTTGCATACAAACAGAAGAGAATGTG 1455
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 934 TACAGTAAGATTACAGAGCAAATATATGTTGGCTCTTGCATACAAACAGAAGAGGATGTG 993
Query 1456 GAAAATTTGTCAGAAGCTGGAATCACTGCCATACTGAATTTCCAAGGTGGAACTGAAGCT 1515
||||| ||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||
Sbjct 994 GAAAACTTGTCGGAAGCTGGAATTACTGCCATACTAAATTTCCAAGGTGGAACTGAAGCT 1053
Query 1516 CAAAACTGGGGAATCTATTCACAAAAAATCAATGATGCATGCCAGAAATCTGAAGTCTTA 1575
||||||||||| ||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1054 CAAAACTGGGGGATCGATTCACAAAGTATCAATGATGCATGCCAGAAATCTGAAGTCTTA 1113
Query 1576 ATGATCAACTACCCTATAAAGGATGCAGATTCCTTTGATCTTAGGAAGAAACTACCACTT 1635
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1114 ATGATCAACTACCCTATAAAGGATGCAGATTCCTTTGATCTTAGGAAGAAGCTACCACTT 1173
Query 1636 TGTGTTGGGCTCTTACTGCGGTTGCTTAAAAAGAACCATCGTGTCTTTGTAACTTGTACC 1695
||||||||||||||||| ||||| || |||||||||||||||||||||||||||||||||
Sbjct 1174 TGTGTTGGGCTCTTACTACGGTTACTGAAAAAGAACCATCGTGTCTTTGTAACTTGTACC 1233
Query 1696 ACTGGTTTTGACCGGTCATCGGCTTGTGTGATTGCTTATCTGCACTGGATGACTGATACC 1755
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1234 ACTGGTTTTGACCGGTCATCCGCTTGTGTGATTGCTTATCTGCACTGGATGACTGATACC 1293
Query 1756 TCTCTTCATGCTGCTTATAGTTTCGTTACTGGATTGCACGCTTGCAAACCTGACAGACCT 1815
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1294 TCTCTTCATGCTGCTTATAGTTTCGTTACTGGATTGCACGCTTGCAAACCTGACAGACCT 1353
Query 1816 GCAATTGCCTGGGCAACATGGGATCTTATTGCAATGGTGGACGATGGCAAACATGATGGG 1875
|||||||| |||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 1354 GCAATTGCTTGGGCAACATGGGATCTTATCGCTATGGTGGACGATGGCAAACATGATGGG 1413
Query 1876 ACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGGGGGAGGATGTATTGTTG 1935
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1414 ACTCCAACACACTCTGTAACCTTTGTGTGGAATGGACATGAGGGGGAGGAGGTATTGTTG 1473
Query 1936 GTTGGGGATTTCACAGGAAACTGGAAAGAACCCATAAAAGCAACGCACAAAGGCGGTCCA 1995
|||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct 1474 GTTGGGGATTTCACAGGAAATTGGAAAGAACCGATAAAAGCAACGCACAAAGGCGGTCCA 1533
Query 1996 CGATTTGAAACTGAAGTTAGACTTTCACAAGGAAAATACTACTACAAGTACATAATCAAC 2055
|| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||
Sbjct 1534 CGTTTTGAAACTGAAGTTAGACTTACACAGGGAAAATACTACTACAAGTACATAATCAAC 1593
Query 2056 GGTGATTGGAGGCATTCAACAACCTCACCAACGGAAAGGGATGACCGAGGAAACACGAAC 2115
|||||||||||||||||| |||| |||||||||||||| |||||||||||||||||||||
Sbjct 1594 GGTGATTGGAGGCATTCAGCAACTTCACCAACGGAAAGAGATGACCGAGGAAACACGAAC 1653
Query 2116 AATATAATTGTAGTTGGTGATGTTGCTAACGTCAGGCCTACTATTCAACAGCCAAGAAAG 2175
||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||
Sbjct 1654 AATATAATTGTAGTTGGTGATGTTGCTAACGTCAGGCCTACAATTCAACAACCAAGAAAG 1713
Query 2176 GATGCAAATATCATAAAGGTGATCGAGAGAGTGTTAACAGAGAGCGAAAGATTTAGGCTG 2235
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1714 GATGCAAATATCATAAAGGTGATCGAGAGAGTGTTAACAGAGAGCGAAAGATTTAGGCTG 1773
Query 2236 GCGAAAGCAGCTCGGTGTATCGCATTCTCAGTTTGTCCAATAAGACTATGCCCAAAGTCG 2295
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1774 GCGAAAGCAGCTCGGTGTATCGCATTCTCAGTTTGTCCAATAAGACTATGCCCAAAGTCG 1833
Query 2296 TAG 2298
|||
Sbjct 1834 TAG 1836
> AT3G01513.1 | Symbols: | unknown protein; CONTAINS InterPro
DOMAIN/s: Protein of unknown function DUF1645 (InterPro:IPR012442);
BEST Arabidopsis thaliana protein match is: unknown
protein (TAIR:AT5G14730.1); Has 69 Blast hits to 69 proteins
in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 69; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr3:201920-202740 REVERSE LENGTH=821
Length=821
Score = 662 bits (358), Expect = 0.0
Identities = 458/506 (91%), Gaps = 8/506 (2%)
Strand=Plus/Plus
Query 1 ATGCAGGATTTGTCCTCAACGGTATCTTATAGCCCAAGCTTCAGTTACTACGCTTCCGGT 60
||||||||||| || |||||||| || |||||||||||||||||||||||||||||||||
Sbjct 23 ATGCAGGATTTTTCTTCAACGGTGTCGTATAGCCCAAGCTTCAGTTACTACGCTTCCGGT 82
Query 61 GAATTCGCCGCCGCTGCAGTTAAAGTTTCCCGCGAAAACCAAAGTTTCAATATGACAGAT 120
||||||||||||||||||||||||||||||||||||||| |||| | |||||| | ||||
Sbjct 83 GAATTCGCCGCCGCTGCAGTTAAAGTTTCCCGCGAAAACGAAAGCTACAATATCAGAGAT 142
Query 121 CATCAATCCGTTAAAGTTGACTCTTTCAATGACGAAGACGCTGACTTCGAGTTTGAAACG 180
||| | ||||||||||| |||| ||||||||||||||| |||||||||||||||||||
Sbjct 143 CATGAGTCCGTTAAAGTCAACTCCGTCAATGACGAAGACGTTGACTTCGAGTTTGAAACG 202
Query 181 TCCCCGTTACATGAAGAAACCTTCGTCC-CATTCCCGACGTTCAAAACCGACGTCGTTTC 239
|| ||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||
Sbjct 203 TCGCCGTTACATGAAGAAACCTTCGTCCAC-TTCCCGACGTTCAAAACCAACGTCGTTTC 261
Query 240 TA-T-CATCAACAAGAAAGACAAAGAAACTGCCCCTGAAAATATATCGGACCGTTTCTCC 297
| | | | ||||||| |||||||||| | ||| ||||||| |||||||| |||||| ||
Sbjct 262 CACTAC-T-AACAAGACAGACAAAGAAGCCGCCGCTGAAAAAATATCGGAGCGTTTCCCC 319
Query 298 GGAAATTGTCTATGGAGTCCACTCAGATCTCCGGCTGCGTCAAAACACTCGGAATCGTCC 357
||||||||||| |||||||||||||||||||||||||| || |||||||| ||||| ||
Sbjct 320 GGAAATTGTCTGTGGAGTCCACTCAGATCTCCGGCTGCTTCGAAACACTCAGAATCATCT 379
Query 358 ACGAGCACACCGAAACAGTGCCGTTTGAAGAAATTTCTAACGAGAAGTCATAGCGACGGT 417
|| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 ACTAGCACACCGAAACGGTGCCGTTTGAAGAAATTTCTAACGAGAAGTCATAGCGACGGT 439
Query 418 GGCGTGTTGGCCC-CAAGCGCATCAAAACGGTGCTATATTTTTAAGGATCTTATGCGGAG 476
|| || ||| ||| |||| ||||||||||||||||||| |||||||||||||| ||||||
Sbjct 440 GGTGTTTTG-CCCTCAAGTGCATCAAAACGGTGCTATACTTTTAAGGATCTTAAGCGGAG 498
Query 477 GAGCCACAGCGACGGCGGCAGCGACA 502
||||||||||||||||||| ||||||
Sbjct 499 GAGCCACAGCGACGGCGGCGGCGACA 524
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 114055638240
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5