BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340373
Length=696
Score E
Sequences producing significant alignments: (Bits) Value
AT3G02290.1 | Symbols: | RING/U-box superfamily protein | chr3... 1147 0.0
> AT3G02290.1 | Symbols: | RING/U-box superfamily protein | chr3:458419-461019
FORWARD LENGTH=1451
Length=1451
Score = 1147 bits (621), Expect = 0.0
Identities = 671/696 (96%), Gaps = 0/696 (0%)
Strand=Plus/Plus
Query 1 ATGGGATGTGTTTCTTCTTGCTTCCGGGTCGAAGACATTGATGACTACATGAATCCTAAT 60
|||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||
Sbjct 425 ATGGGATGTGTTTCTTCTTGCTTCCGGGTCGAGGACATTGATGAGTACATGAATCCAAAC 484
Query 61 AGCTCTGTCTATAGGAACTGTCCCTGCATAAGATGCCTTGCTCATAATTTCCTTAACCTG 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 485 AGCTCTGTCTATAGGAACTGTCCCTGCATAAGATGCCTTGCTCATAATTTCCTTAACCTG 544
Query 121 TATATCTCGGTCTTCAGAAGAGGTGAAACCCGCTCTCTCCCATCTTCGGTTCAAGCTACT 180
||||| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 545 TATATTTCGGTCTTCAGAAGAGGGGAAACTCGCTCTCTCCCATCTTCGGTTCAAGCTACT 604
Query 181 GCATCGATAACTTCCTCTTCTTCACACGATAACTTTCTGTCTGAAGCATTCCGTTCTACA 240
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 605 GCATCGATAACTTCCTCTTCTTCACACGATAACTTTTTGTCTGAAGCATTCCGTTCTACT 664
Query 241 CCAAGACCTCTGCCTTATGATGCTGATCCTAGATACTTCCGCTCACTCGTCTCAAGACGG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 665 CCAAGACCTCTGCCTTATGATGCTGATCCTAGATACTTCCGCTCACTCGTCTCAAGACGG 724
Query 301 GAGAAGGGTTCAAGTCATTCCCATGAGGAAGTTGAACCTTTACGAAGCGATAGCGATGCA 360
|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 725 GAGAAGGGTTCAAGTCATTCTCATGAGGAAGTTGAACCTTTAAGAAGCGATAGCGATGCA 784
Query 361 GATTCTGAGTCTTTCGGCCTAGGAGGATGCAAATGGGCTAATAATAAATCCACCATCTCT 420
|||||||| |||||||| ||||||| |||||||||||||||||||| |||||| |||||
Sbjct 785 GATTCTGAATCTTTCGGGGTAGGAGGGTGCAAATGGGCTAATAATAAGTCCACCCTCTCT 844
Query 421 GATAAAGATTCCAAAGAAGAGTACTCTAGTAAATCCAGTCTCAGGATTTTGAGATCAAAG 480
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 845 GATAAAGATTCCAAAGAAGAGTACTCTAGTAAATCCAGTCTCAGGATTTTGAGATCAAGG 904
Query 481 TCCAAGTCAATAATGGCCGACTCTGAAAACATGTATATATTGTCTGAAGATGAAGATGTT 540
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 905 TCCAAGTCAATAATGGCCGACTCTGAAAACATGTATATATTGTCTGAAGACGAAGATGTC 964
Query 541 TGCCCTACTTGTCTTGAAGAATATACATCAGAGAACCCAAAGATTGTGACAAAATGTTCT 600
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 965 TGCCCAACTTGTCTTGAAGAATATACATCAGAGAACCCAAAGATTGTGACAAAATGTTCA 1024
Query 601 CACCATTTCCACCTTAGTTGCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCTGTC 660
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1025 CACCATTTCCACCTTAGTTGCATTTATGAGTGGATGGAGAGAAGTGAAAACTGTCCAGTC 1084
Query 661 TGCGGGAAGGTGATGGAATTCAACGAAACACCATGA 696
||||| |||||||||||||||||||||||||| |||
Sbjct 1085 TGCGGAAAGGTGATGGAATTCAACGAAACACCGTGA 1120
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 33707112637
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5