BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340394
Length=1059
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34440.1 | Symbols: | Protein kinase superfamily protein | ... 723 0.0
> AT4G34440.1 | Symbols: | Protein kinase superfamily protein
| chr4:16465828-16468956 FORWARD LENGTH=2317
Length=2317
Score = 723 bits (391), Expect = 0.0
Identities = 443/468 (95%), Gaps = 3/468 (1%)
Strand=Plus/Plus
Query 594 GCTCATAACCGGACA-ACCTCCAGTGGATCTAACTGGAGAAATGGAATATAGCTTGGTAG 652
||||||||||||| | |||||| ||||||||||||||||||||||| ||||||||||||
Sbjct 1608 GCTCATAACCGGA-AGACCTCCTCTGGATCTAACTGGAGAAATGGAAGATAGCTTGGTAG 1666
Query 653 ACTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGTGATTACAACCAATTGGCAG 712
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 1667 ATTGGGCAAGGCCTTTGTGTTTGAAAGCAGCTCAAGATGGAGATTACAACCAATTGGCTG 1726
Query 713 ATCCGCGTCTAGAGCTAAACTACAATCATCCAGAGATGGTTCAAATGGCTTCTTGTGCAG 772
|||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct 1727 ATCCACGTCTAGAGCTAAACTACAGTCATCAAGAGATGGTTCAAATGGCTTCTTGTGCAG 1786
Query 773 CTGCAGCAATCAGACACTCAACAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCAC 832
|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1787 CTGCAGCAATCAGACATTCAGCAAGAAGACGGCCTAAGATGAGCCAGATTGTACGAGCAC 1846
Query 833 TAGAAGGAGATATGTCAATGGATGATCTAAGTGAAGGAACAAGACCAGGACAAAGCAAGT 892
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||
Sbjct 1847 TAGAAGGAGATATGTCAATGGATGATCTAAGTGAGGGAACAAGACCAGGACAAAGCACGT 1906
Query 893 ATTTGAGGCCCGGAAGCGTGAGCTCAGAGTATAACGCAAGCTCGTACACCGCAGACATGA 952
| ||||| ||||| |||||||||||||||||| |||||||||||||||| ||||||||||
Sbjct 1907 ACTTGAGCCCCGGGAGCGTGAGCTCAGAGTATGACGCAAGCTCGTACACGGCAGACATGA 1966
Query 953 AAAAATTCAAGAAATTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAA 1012
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1967 AAAAGTTCAAGAAACTGGCGTTAGAGAATAAAGAATATCAAAGCAGTGAATATGGTGGAA 2026
Query 1013 CAAGTGAGTATGGTTTAAATCCT-CTGCTTCAAGTAGTGAAGAAATGA 1059
||||||||||||| ||||| ||| ||||||||||||||||||||||||
Sbjct 2027 CAAGTGAGTATGGCTTAAACCCTTCTGCTTCAAGTAGTGAAGAAATGA 2074
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51857162985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5