BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340454
Length=1929
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03060.1 | Symbols: | P-loop containing nucleoside triphosp... 2224 0.0
AT5G16930.1 | Symbols: | AAA-type ATPase family protein | chr5... 1358 0.0
> AT3G03060.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:692056-695648 FORWARD
LENGTH=2243
Length=2243
Score = 2224 bits (1204), Expect = 0.0
Identities = 1317/1372 (96%), Gaps = 6/1372 (0%)
Strand=Plus/Plus
Query 546 GGCCGAGAATGAGTTCCATAGAGCAAGAAATCAAGAACTTGTGAAAATGCAAGAAGATTC 605
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 636 GGCCGAGAATGAGTTCCATAGAACAAGAAATCAAGAACTTGTGAAAATGCAAGAAGATTC 695
Query 606 GGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGGAGCAGATCCAGGCGCAGAGACG 665
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 696 AGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGGAACAGATCCAGGCGCAGAGACG 755
Query 666 ACAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTATAGC 725
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 756 CCAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTATAGC 815
Query 726 AGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGAAGAATGCT 785
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 816 AGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGGAGAATGCT 875
Query 786 TGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATTTGA 845
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 876 TGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATTCGA 935
Query 846 CCATATTGGAGGCGGTTTACGTGCAATTCTGACGGATCAAAATAAACTGGTTGTTGCTGT 905
|||||||||||||||||||||||| |||||||||||||||||||||||| |||| |||||
Sbjct 936 CCATATTGGAGGCGGTTTACGTGCTATTCTGACGGATCAAAATAAACTGATTGTCGCTGT 995
Query 906 TGGGGGTGTAACTGCTCTAGCAGCTGGAATCTACACAACGAGAGAAGGTGCAAGGGTCAT 965
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||
Sbjct 996 TGGGGGTGTAACTGCTCTGGCAGCTGGAATCTACACAACGAGAGAAGGTGCAAAGGTTAT 1055
Query 966 CTGGAGCTATGTGGACAGAATATTAGGACAACCATCGTTAATCCGAGAATCATCAAGAGG 1025
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1056 CTGGAGCTATGTGGACAGAATATTAGGACAACCATCGTTAATCCGAGAATCATCAAGAGG 1115
Query 1026 CAAGTACCCTTGGTCTGGTTCGCTTTCTCGTGTAATGTCCACATTGCGGGGTAAGGAGCC 1085
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1116 CAAGTACCCTTGGTCTGGTTCGCTTTCTCGTGTAATGTCCACATTGCGGGGTAAGGAGTC 1175
Query 1086 AGCTTCCAAAAGTGGACAAGGGTTTGGTGATGTTATTCTGCATCCTCCCCT-TCAAAGGA 1144
||||||||||| |||| || |||| |||||||||||| |||||||||| || |||| ||
Sbjct 1176 AGCTTCCAAAAATGGAAAAAGGTTCGGTGATGTTATTTTGCATCCTCCGCTAGCAAA-GA 1234
Query 1145 GAATTGAGCACTTAGCTA-ATGCAACCGCCAACACAAAACTCCATCAGGCTCCTTTCCGA 1203
||||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||
Sbjct 1235 GAATTGAGCACCTAGCTACCT-CAACCGCCAACACAAAACTCCACCAGGCTCCTTTCCGA 1293
Query 1204 AATGTGCTTTTCTACGGTCCTCCAGGAACAGGAAAAACAATGGCTGCTAGAGAGCTGGCT 1263
||| | ||| || ||||||||||||||||||||||||||||||| || ||||||||||||
Sbjct 1294 AATATTCTTCTCCACGGTCCTCCAGGAACAGGAAAAACAATGGCGGCCAGAGAGCTGGCT 1353
Query 1264 CGTAAATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTTGCTCCCCTTGGATCT 1323
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1354 CGTAAATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTTGCTCCCCTTGGAGCT 1413
Query 1324 CAGGCTGTTACAAAAATTCACGAATTGTTTGATTGGGGCAAAAAGTCTAAGAGAGGTTTA 1383
|||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1414 CAGGCTGTTACAAAGATTCACGAACTGTTTGATTGGGGCAAAAAGTCTAAGAGAGGTTTA 1473
Query 1384 TTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAACAAAACATACATGAGT 1443
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1474 TTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAACAAAACATACATGAGT 1533
Query 1444 GAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTTCGCACGGGTGATCAGTCCAAAGAC 1503
||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct 1534 GAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTCCGCACGGGTGATCAATCCAAAGAC 1593
Query 1504 ATAGTCTTAGCACTTGCTACTAACCGACCTGGTGACCTAGACTCAGCTGTGGCTGACCGT 1563
|||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||
Sbjct 1594 ATAGTCTTAGCACTAGCTACAAACCGACCTGGTGACTTAGACTCAGCTGTGGCTGACCGT 1653
Query 1564 GTCGATGAAGTTCTTGAATTCCCCTTACCTGGAGAAGAAGAGCGGTTCAAGCTTTTAAAC 1623
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1654 GTCGATGAAGTTCTCGAATTCCCCTTACCTGGAGAAGAAGAGCGGTTCAAGCTTTTAAAC 1713
Query 1624 CTATATCTAGAAAAGTACATAGCTGAGGCTGGTCCAAAAAAGCCGAGTTTGTTCGACCGC 1683
|| |||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct 1714 CTCTATCTAGAAAAGTACATAGCTGAGGCTGGTCCAAGCAAGCCGGGTTTGTTCGACCGC 1773
Query 1684 CTCTTCAAGAAAGAACAGCAGAAGATCGAGATAAAGGGTGTCACTGAGGAGCTCTTAAAG 1743
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1774 CTCTTCAAGAAAGAACAGCAGAAGATCGAGATAAAGGGTGTCACGGAGGAGCTCTTAAAG 1833
Query 1744 GAAGCAGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAGATTGCGAAACTGATGGCAAGT 1803
||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1834 GAAGCGGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAAATTGCGAAACTGATGGCAAGT 1893
Query 1804 GTTCAAGCAGCTGTTTATGGAAGTGAGGACTGTGTGTTGGACTCTGTGCTATTT-AGAGA 1862
|||||||||||||| |||||||||||||||||||||||||||||| |||| ||| |||||
Sbjct 1894 GTTCAAGCAGCTGTGTATGGAAGTGAGGACTGTGTGTTGGACTCTATGCT-TTTCAGAGA 1952
Query 1863 GGTTGTTGAGTACAAAGTTGCAGAGCATCAACAGAGAAGAAAATTGGCTGGA 1914
||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1953 GGTTGTTGATTACAAAGTTGCAGAGCATCAACAGAGAAGGAAATTGGCTGGA 2004
Score = 782 bits (423), Expect = 0.0
Identities = 486/515 (94%), Gaps = 9/515 (2%)
Strand=Plus/Plus
Query 1 ATGGCTCAGAAATGTGCGATTGGTTTGATTTCAGCCCTAGCAGCATCGGCTTCTCTTGCG 60
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 133 ATGGCTCAGAAATGTGCGATTGGTTTGATTTCAGCCCTAGCAGCTTCGGCTTCTCTTGCG 192
Query 61 CAATCTAAAGTCGCTTCTGCAGATGGTCCTTTCAATCTCTCTGGATTCTCTACTTCTGCG 120
|||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||
Sbjct 193 AAATCTAAAGTCGCTTCTGCAGATGGTCCCTTCAATCTCTCTGGGTTCTCTACTTCTGCG 252
Query 121 AATCCTCAGCAGCAGCCGCCGTCTCAAACTCAGAAGCCACCGTCGACAGCTGCTGAAGAA 180
||||||||||||||| | | |||| ||| ||||||||| |||| |||||||
Sbjct 253 AATCCTCAGCAGCAG--G-CTTCTC---CTC---CTCCACCGTCGTTGGCTGGTGAAGAA 303
Query 181 TCTTCAGCTCCTCCGCGAGCTCGGAATGATAATCCTAGGACGAGTTCCGGTGGTTTCGAT 240
||||||||||||||||||||||| ||||||||||| ||||| ||||||||||||||||||
Sbjct 304 TCTTCAGCTCCTCCGCGAGCTCGCAATGATAATCCGAGGACAAGTTCCGGTGGTTTCGAT 363
Query 241 CCGGAGGCACTGGAGCGAGGTGCTAAAGCCTTGAAAGAGATTAACAATTCCTCTTACGCG 300
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 364 CCGGAGGCACTGGAGCGAGGTGCTAAAGCCTTGAAAGAGATTAACCATTCCTCTTACGCG 423
Query 301 AAAAAGGTTTTTGAAAGTATTAAGCAGCAAGAAGAGACAAAGCAAACTGAGTTTGCAACC 360
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 424 AAAAAGGTTTTTGAAAGTATTAAGCAGCAAGAAGAGACAAAGCAAACTGAGTTTGCAACG 483
Query 361 AAGGCGCAAGAGTTTAAAGCTATGCAAGCACAAGCTGAAACTGAGAGGCATAAGGTTATA 420
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 484 AAGGCGCAAGAGTTTAAAGCTATGCAAGCCCAAGCTGAAACTGAGAGGCATAAGGTAATA 543
Query 421 TATGATGAACAGAAAAAACTTGCTCAGCACCAAGCACAGACAAAATCACAGATGGCCCGT 480
||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||
Sbjct 544 TATGATGAACAGAAAAAGCTTGCTCAGCACCAAGCACAGACAAAATCGCAGATGGCCCGT 603
Query 481 TATGAAGATGACTTGGCAAGAAAGAGGATGCAGGC 515
|||||||||||||||||||||||||||||||||||
Sbjct 604 TATGAAGATGACTTGGCAAGAAAGAGGATGCAGGC 638
> AT5G16930.1 | Symbols: | AAA-type ATPase family protein | chr5:5568393-5571859
FORWARD LENGTH=2414
Length=2414
Score = 1358 bits (735), Expect = 0.0
Identities = 1182/1395 (85%), Gaps = 42/1395 (3%)
Strand=Plus/Plus
Query 546 GGCCGAGAATG-AGTTCCATA-GAGCAAGAAATCAAGAACTTGTGAAAATGCAAGAAGAT 603
||| ||||||| || ||| | || ||||||| ||||||||||||||||||||||||||
Sbjct 719 GGCTGAGAATGAAG-CCCAGAGGA-CAAGAAACCAAGAACTTGTGAAAATGCAAGAAGAA 776
Query 604 TCGGCAATTAGGCAGGAACAAGCTCGACGAGCTACTGAGG-AGCAGATCCAGGCGCAGAG 662
|| |||||||||| |||| |||||||||||||||||||| || |||| || || |||||
Sbjct 777 TCAGCAATTAGGCGGGAAGTAGCTCGACGAGCTACTGAGGAAG-AGATTCAAGCCCAGAG 835
Query 663 ACGACAAACTGAGAGGGAGAAGGCTGAGATTGAACGTGAGACCATCAGGGTCAAAGCTAT 722
|||||| || ||||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 836 ACGACAGACAGAGAGGGAGAAAGCTGAGATTGAACGTGAGACAATCAGGGTCAAAGCTAT 895
Query 723 AGCAGAAGCGGAAGGAAGAGCCCATGAAGCTAGGCTTGCTGAAGATGTAAACAGAAGAAT 782
|||||||| ||||| ||||| | |||| | | |||| |||| ||||| ||||| |||||
Sbjct 896 GGCAGAAGCTGAAGGGAGAGCTCGTGAATCAAAGCTTTCTGAGGATGTCAACAGGAGAAT 955
Query 783 GCTTGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTGCTGCCATAAACACAACATT 842
|||||||||||||||||||||||||||||||||||||||| ||||||| || || || ||
Sbjct 956 GCTTGTTGATCGTGCAAATGCAGAAAGAGAGAAATGGGTTTCTGCCATCAATACTACCTT 1015
Query 843 TGACCATATTGGAGGCGGTTTACGTGCAATTCTGACGGATCAAAATAAACTGGTTGTTGC 902
|| ||||||||||| || || ||| | ||||| || ||||||||||| || |||||||
Sbjct 1016 CGATCATATTGGAGGGGGGTTGCGTACCATTCTAACAGATCAAAATAAGCTAATTGTTGC 1075
Query 903 TGTTGGGGGTGTAACTGCTCTAGCAGCTGGAATCTACACAACGAGAGAAGGTGC-AAGGG 961
|||||| ||| |||| ||||| |||||||| ||||||||||||||||||||||| ||||
Sbjct 1076 TGTTGGAGGTCTAACCGCTCTTGCAGCTGGGATCTACACAACGAGAGAAGGTGCCAAGGT 1135
Query 962 TCATCTGGAGCTATGTGGACAGAATATTAGGACAACCATCGT-TAATCCGAGAATCATCA 1020
| ||||||||||| || || ||||||||||||||||| || | |||| ||||||||||
Sbjct 1136 T-ATCTGGAGCTACGTAGATAGAATATTAGGACAACCTTC-TCTAATTAGAGAATCATCG 1193
Query 1021 AGAGGCAAGTACCCTTGGTCTGGTTC-GCTTTCTCGTGTAATGTCCACATTGCGGGGT-- 1077
||||| |||||||||||||||||||| |||| ||||||| |||||||||||||||||
Sbjct 1194 AGAGGAAAGTACCCTTGGTCTGGTTCTGCTT-CTCGTGTCTTGTCCACATTGCGGGGTGG 1252
Query 1078 ----AAGGAGCC-AGCTTCCAAAAGTGGACAAGGGTTTGGTGATGTTATTCT-GCATCCT 1131
|||||| | | ||||||||| |||| ||||||||||||||||||| || || |||
Sbjct 1253 TGGTAAGGAGTCTA-CTTCCAAAACTGGAAAAGGGTTTGGTGATGTTAT-CTTGCGCCCT 1310
Query 1132 CCCCTTCAAAGGAGAATTGAGCA-CTTAGCTAATGCAACCGCCAACACAAAA-CTCCATC 1189
| ||| ||| |||||| || || || |||||||||||| |||||||||||| | ||| |
Sbjct 1311 GCTCTTGAAAAGAGAATCGAACAGCT-AGCTAATGCAACTGCCAACACAAAAGC-CCACC 1368
Query 1190 AGGCTCCTTTCCGAAATGTGCTTTTCTACGGTCCTCCAGGAACAGGAAAAACAATGGCTG 1249
| || |||||||||||| | |||||||||||||| ||||||||||| || ||||||||||
Sbjct 1369 AAGCACCTTTCCGAAATATACTTTTCTACGGTCCACCAGGAACAGGGAAGACAATGGCTG 1428
Query 1250 CTAGAGAGCTGGCTCGTAA-ATCTGGTTTGGATTATGCACTGATGACTGGTGGAGATGTT 1308
| ||||||||||||| || ||||||| | ||||||||| ||||||| ||||||||||||
Sbjct 1429 CCCGAGAGCTGGCTCG-AAGATCTGGTCTAGATTATGCATTGATGACGGGTGGAGATGTT 1487
Query 1309 GCTCCCCTTGGATCTCAGGCTGTTACAAAAATTCACGAATTGTTTGATTGGGGCAAAAAG 1368
||||| |||||| |||||||||| ||||| || ||| || ||||||| ||| ||||||
Sbjct 1488 GCTCCACTTGGAGCTCAGGCTGTAACAAAGATACACCAACTGTTTGACTGGTCCAAAAAA 1547
Query 1369 TCTAAGAGAGGTTTATTGCTCTTCATTGATGAAGCCGATGCATTTTTGTGCGAGAGGAAC 1428
||||||||||| || ||||||||||| |||||||||||||||||| |||||||| |||||
Sbjct 1548 TCTAAGAGAGGCTTGTTGCTCTTCATCGATGAAGCCGATGCATTTCTGTGCGAGCGGAAC 1607
Query 1429 AAAACATACATGAGTGAAGCCCAAAGGAGTGCTCTAAATGCTCTTCTCTTTCGCACGGGT 1488
|||||||||||||| ||||||||||||||||| |||||||| || ||||| || ||||||
Sbjct 1608 AAAACATACATGAGCGAAGCCCAAAGGAGTGCACTAAATGCCCTCCTCTTCCGTACGGGT 1667
Query 1489 GATCAGTCCAAAGACATAGTCTTAGCACTTGCTACTAACCGACCTGGTGACCTAGACTCA 1548
|| |||||||||||||||||| |||| ||||| || ||| |||||||||| |||||||||
Sbjct 1668 GACCAGTCCAAAGACATAGTCCTAGCGCTTGCCACAAACAGACCTGGTGATCTAGACTCA 1727
Query 1549 GCTGTGGCTGACCGTGTCGATGA-AGTTCTTGAATTCCCCTTACCTGGAGAAGAAGAGCG 1607
|| |||||||||||| ||||||| | | |||||||||||||| |||||||||||||||||
Sbjct 1728 GCAGTGGCTGACCGTATCGATGAGACT-CTTGAATTCCCCTTGCCTGGAGAAGAAGAGCG 1786
Query 1608 GTTCAAGCTTTTAAACCTATATCTAGAAAAGTACATAGCTGAGGCTGG-TCCAAAAAAGC 1666
||||||||| ||||||| || ||||| ||||||||| || || | | || ||||||||
Sbjct 1787 CTTCAAGCTTCTAAACCTCTACCTAGAGAAGTACATATCTAAGAC-GAATCTAAAAAAGC 1845
Query 1667 CGAGTTTGTTCGACCGCCTCTTCAAGAAAGAACAGCAGA-AGATCGAGATAAAGGGTGTC 1725
|| ||||| || | |||| ||||| ||||| ||||||| | || |||||||| || ||
Sbjct 1846 CGGGTTTGCTCCAAAGCCTTTTCAAAAAAGAGCAGCAGACA-ATTGAGATAAAAGGCGTT 1904
Query 1726 ACTGAGGAGCTCTT-AAAGGAAGCAGCTGCAAAAACCGAAGGGTTTTCAGGTAGAGAGAT 1784
|||||||| ||| | |||| |||| || || ||||| |||||||||| |||||||| ||
Sbjct 1905 ACTGAGGATCTCCTGAAAG-AAGCTGCCGCCAAAACAAAAGGGTTTTCGGGTAGAGAAAT 1963
Query 1785 TGCGAAACTGATGGCAAGTGTTCAAGCAGCTGTTTATGGAAGTG-AGGACTG-TGTGTTG 1842
|||||| |||||||||| |||||||| ||||| |||||||| | | |||| | | |||
Sbjct 1964 CGCGAAATTGATGGCAAGCGTTCAAGCTGCTGTGTATGGAAGCGCAA-ACTGCT-TATTG 2021
Query 1843 GACTCTGTGCTATTT-AGAGAGGTTGTTGAGTACAAAGTTGCAGAGCATCAACAGAGAAG 1901
||| | || ||| |||||||| |||| |||||||| |||||||||||||||||||
Sbjct 2022 GACGCAAACCT-TTTCAGAGAGGTCATTGATTACAAAGTCGCAGAGCATCAACAGAGAAA 2080
Query 1902 AAAATTGGCTGGAAC 1916
|||| | ||||||||
Sbjct 2081 AAAACTAGCTGGAAC 2095
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 95531637135
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5