BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340484
Length=828
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03290.1 | Symbols: | Adenine nucleotide alpha hydrolases-l... 1033 0.0
> AT3G03290.1 | Symbols: | Adenine nucleotide alpha hydrolases-like
superfamily protein | chr3:766745-767742 FORWARD LENGTH=825
Length=825
Score = 1033 bits (559), Expect = 0.0
Identities = 759/848 (90%), Gaps = 43/848 (5%)
Strand=Plus/Plus
Query 1 ATGGCAAGATCGCTCAAGAAATCAGTTAAGTTGAGCCTAAGACATGTCCGGGTCCG---T 57
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||| |
Sbjct 1 ATGGCAAGATCGCTCAAGAAATCAGTCAAGTTGAGCCTAAGACATGTCCGGATCCGTTCT 60
Query 58 T------T---G---AAACAAGACTCTAGTTCCATAGAAAGAGATCAGAGAATTGAGTTT 105
| | | |||| |||||||||||||||||||| |||||||||||||||||||
Sbjct 61 TCAACCATCGGGTTTAAACCAGACTCTAGTTCCATAGAAATAGATCAGAGAATTGAGTTT 120
Query 106 CTTGGACGAGACAAGGGGGTTGGAGAAGAGGAAAACGATGGTGACAGTAGCAGCAGCGAG 165
| | | ||||||||||||| |||||| ||| |||| ||| |||
Sbjct 121 C-T--------C---------GGAGAAGAGGAAACCGATGGCGAC---AGCACCAGTGAG 159
Query 166 TATgaagagtttgaagaagaggaagaaggaggaggagaaggggaaggagaggaaCAAGAT 225
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 160 TATGAAGAGTTTGAAGAAGAGAAAGAACGAGGAGGAGAAGGGGAAGGAGAGGAACAAGAT 219
Query 226 GAT-G--GCAAGAGCGTTGTGAGCGGTGGA-AAAAGTGGATGCGGGGAGACAGAAGCCGC 281
||| | |||||| ||||| ||||||| | ||||||| | || ||||| ||||||||
Sbjct 220 GATGGCTGCAAGATCGTTGAGAGCGGT-TACAAAAGTGAACACGAAGAGACCGAAGCCGC 278
Query 282 GGTGGAAGCAGCAGAGGCGGAGATTACAGAGGCCGGGAATAGGGTGATGGTGGTGGTGGA 341
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 279 GGTGGAAGCAGTAGAGGCGGAGATTACAGAGGCAGGGAATAGGGTGATGGTGGTGGTTGA 338
Query 342 TAAAGTGATTGCATCAACTGGAGCTCTTGAATGGGCTTTGAAGCATACATTACAGTCACA 401
|||||||||||||||||||||||||||||| ||||||||||| |||||| |||| |||||
Sbjct 339 TAAAGTGATTGCATCAACTGGAGCTCTTGAGTGGGCTTTGAAACATACACTACAATCACA 398
Query 402 AGACTATCTTTTTCTCTTATATTTCTCCAAACCCTTTAGAAAAGGCAAAAGGAAGAACCG 461
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 399 AGACTATCTTTTTCTTTTATATTTCTCCAAACCCTTTAGAAAAGGAAAAAGGAAGAACCG 458
Query 462 GAAAAGTGAAGTAAAGACCGATGAACTCGTCCATACTC-TAAAGAAACTCTGCCAAACAA 520
||||||||||||||||||||||||||| || ||||||| |||| ||||||||||||||||
Sbjct 459 GAAAAGTGAAGTAAAGACCGATGAACTTGTTCATACTCTTAAA-AAACTCTGCCAAACAA 517
Query 521 AGCGACCCGGgatagaggttgagataagaaggctagaaggaaaagagaaagataaaggag 580
||||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||||
Sbjct 518 AGCGACCAGGGATAGAGGTTGAGATAAGAAGGCTACAAGGAAAAGAGAAAGAGAAAGGAG 577
Query 581 agaagatagtggaagaagctaaagaaCAACAAGTGAGTCTATTAGTGGTTGGAGAAGAGA 640
|||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||
Sbjct 578 AGAAGATAGTGGAAGAAGCTAAAGAACAACAAGTGAGTCTATTAGTTGTTGGAAAAGAGA 637
Query 641 AGAAACCGCCGGTTTGGAGATTGTTGAAGAGATGGGGATGGAAGAAACGGCGAGGACGAG 700
|||||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 638 AGAAACCGCCAGTGTGGAGATTGTTGAAGAGATGGGGATGGAAGAAACGGCGAGGCCGAG 697
Query 701 CCGGAGTTCTCAAGTATTGCCTAGAGAAGGCTTCATGTATGACCATTGCAGTTAAACCAA 760
||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 698 CCGGAACTCTCAAGTATTGCCTAGAGAAGGCTTCATGTATGACCATTGCGGTTAAACCAA 757
Query 761 AGAACCGTAAGCTTGGTGGTTACCTGATCACAACCAAACGTCACAAGAACTTTTGGTTGT 820
|||||||||| |||||||||||| ||||||||||||| |||||||||||||||||| | |
Sbjct 758 AGAACCGTAAACTTGGTGGTTACTTGATCACAACCAAGCGTCACAAGAACTTTTGGCTCT 817
Query 821 TAGCTTGA 828
||||||||
Sbjct 818 TAGCTTGA 825
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40338020041
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5