BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340491
Length=798
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03940.1 | Symbols: | Protein kinase family protein | chr3:... 1122 0.0
AT5G18190.1 | Symbols: | Protein kinase family protein | chr5:... 715 0.0
AT3G03930.1 | Symbols: | protein kinase-related | chr3:1011414... 706 0.0
> AT3G03940.1 | Symbols: | Protein kinase family protein | chr3:1014025-1019224
REVERSE LENGTH=2862
Length=2862
Score = 1122 bits (607), Expect = 0.0
Identities = 686/723 (95%), Gaps = 10/723 (1%)
Strand=Plus/Plus
Query 86 AGAGGTATCATTACAACGTTGCAGACTCAAGACTTGCACAGCATGTTGAGAAAGGTAATG 145
|||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1799 AGAGATATCATTACAACGTTGCAGACTTAAGACTTGCACAGCATGTTGAGAAAGGTAATG 1858
Query 146 AGGATGGCCTTTTCGTAAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATCATGG 205
|||||||||||||| ||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 1859 AGGATGGCCTTTTCATAAGCTGTGTAGCATCATCAGCTAATCTCTGGGCCATCATCATGG 1918
Query 206 ATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCGGTCTTCCTGCACAAGG 265
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1919 ATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCAGTCTTCCTGCACAAGG 1978
Query 266 ACTGGATTATAGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATA 325
||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1979 ACTGGATCATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATA 2038
Query 326 ATGGGAGCTCGTTGGTTGTTATGGCTAAAGGAACTCCTTATACCCAGCAATCATACAAAG 385
|||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 2039 ATGGAAGCTCGTTGGTTGTTATGGCTAAAGGAACTCCTTATACCCAGCAATCTTACAAAG 2098
Query 386 TCAGCAACTCATTTCCATTCAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTTCATGTAA 445
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2099 TCAGCGACTCATTTCCATTCAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTTCATGTAA 2158
Query 446 CATCCATGACCACCGCTGGGAGTCGTTGGGAAGTAGTAATGTCCAGGAACTCAGGCTACT 505
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 2159 CATCCATGACCACCGCTGGGAGTCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTACT 2218
Query 506 CTGAACAGGTGGTGGAGCTTGACTTTTTGTACCCCAGTGAAGGAATACATCGAAGATGGG 565
||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||
Sbjct 2219 CTGAACAGGTGGTGGAGCTTGACTTCTTGTACCCAAGTGAAGGAATACATCGAAGGTGGG 2278
Query 566 AAAGTGGATACAGGATAACATCAATGGCTGCAACAGCCGATCAAACAGCTTTTATATTGA 625
||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||
Sbjct 2279 AAAGTGGATACAGGATAACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGA 2338
Query 626 GTATACCTAAACGAAAAGTAACCGATGAAACCCAAGAGATTCTCCGCACTTCTGCCTTCC 685
||||||||||||||||| ||||||||||||||||||||| |||||| |||||||||||||
Sbjct 2339 GTATACCTAAACGAAAAATAACCGATGAAACCCAAGAGACTCTCCGGACTTCTGCCTTCC 2398
Query 686 CAAGTACCCATGTCAAGG-G----G--CAAAAAATCTGTACATTGCATCAATATGCTATG 738
|||||||||||||||||| | | | |||||||||||||||||||||||||||||||
Sbjct 2399 CAAGTACCCATGTCAAGGAGAAATGGGCGAAAAATCTGTACATTGCATCAATATGCTATG 2458
Query 739 GTCGGACAGTTTGCTGAGGAAACATG---TATGGTGTTTCAACCTCTCTCACTCTCGCTC 795
||||||||||||||||| |||||||| ||| |||||||||||||||||||||| |||
Sbjct 2459 GTCGGACAGTTTGCTGATGAAACATGGAGTATACTGTTTCAACCTCTCTCACTCTCTCTC 2518
Query 796 TAG 798
|||
Sbjct 2519 TAG 2521
> AT5G18190.1 | Symbols: | Protein kinase family protein | chr5:6009967-6014689
REVERSE LENGTH=2674
Length=2674
Score = 715 bits (387), Expect = 0.0
Identities = 587/683 (86%), Gaps = 15/683 (2%)
Strand=Plus/Plus
Query 86 AGAGGTATCATTACAACGTTGCAGACTCAAGACTTGCA-CAGCATGTTGAGAAAGGTAAT 144
|||| ||||| |||||||||||||||||||| ||||| |||||||| |||| ||||||
Sbjct 1750 AGAGATATCACTACAACGTTGCAGACTCAAG-GTTGCATCAGCATGTACAGAAGGGTAAT 1808
Query 145 GAGGATGGCCTTTTCGTAAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATCATG 204
|||||||||||||| | |||||||||||||||||||||||||||||||||||||| |||
Sbjct 1809 GAGGATGGCCTTTTAATTAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATG 1868
Query 205 GATGCTGGGACTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCGGTCTTCCTGCACAAG 264
|||||||||||||| |||| ||||||||||||||| |||| | |||||||| ||||||
Sbjct 1869 GATGCTGGGACTGGATTCACCTCTCAAGTTTATGAATTGTCAACTGTCTTCCTTCACAAG 1928
Query 265 GACTGGATTATAGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAAT 324
||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||
Sbjct 1929 GACTGGATTATGGAACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTTCAGAT 1988
Query 325 AATGGGAGCTCGTTGGTTGTTATGGCTAAAGGAAC-TCCTTATACCCAGCAATCATACAA 383
|| |||| ||| || ||||||||| | |||||||| || |||||| |||||||| |||||
Sbjct 1989 AACGGGAACTCATTAGTTGTTATGTCAAAAGGAACGTC-TTATACTCAGCAATCTTACAA 2047
Query 384 AGTCAGCAACTCATTTCCATTCAAGTGGATAAATAA-AAAGTGGAAAGAAGGTTTTCATG 442
||||||| |||| ||||| |||||||||||||| || ||| |||||||||| ||| ||||
Sbjct 2048 AGTCAGCGACTCTTTTCCTTTCAAGTGGATAAACAAGAAA-TGGAAAGAAGATTTCCATG 2106
Query 443 TAACATCCATGACCACCGCTGGGAGTCGTTGGGAAGTAGTAATGTCCAGGAACTCAGGCT 502
|||| |||||||| || ||||||| |||||||| || |||||||| ||||| || ||||
Sbjct 2107 TAACCTCCATGACAACTGCTGGGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCT 2166
Query 503 ACTCTGAACAGGTGGTGGAGCTTGACTTTTTGTACCCCAGTGAAGGAATACATCGAAGAT 562
||||||| ||||| |||||||| |||||||||||||| || || ||||||||| | || |
Sbjct 2167 ACTCTGATCAGGTCGTGGAGCTCGACTTTTTGTACCCAAGCGATGGAATACATAGGAGGT 2226
Query 563 GGGAAAGTGGATACAGGATAACATCAATGGCTGCAACAGCCGATCAAACAGCTTTTATAT 622
|||||||||| || ||||||||||||||||| ||||| || |||||| ||||||| ||||
Sbjct 2227 GGGAAAGTGGGTATAGGATAACATCAATGGCAGCAACTGCAGATCAAGCAGCTTTCATAT 2286
Query 623 TGAGTATACCTAAACG-AAAAGTAACCGATGAAACCCAAGAGATTCTCCGCACTTCTGCC 681
| || |||| ||||| |||| | | |||||||| ||||||| ||| ||||| | |||
Sbjct 2287 TAAGCGTACCAAAACGTAAAA-TGATGGATGAAACTCAAGAGACTCTTCGCACCACCGCC 2345
Query 682 TTCCCAAGTACCCATGTCAAGG------GG-CAAAAAATCTGTACATTGCATCAATATGC 734
|| ||||| || |||||||||| || | |||||||||||||||||||||||||||
Sbjct 2346 TTTCCAAGCACTCATGTCAAGGAAAAATGGGCGAAAAATCTGTACATTGCATCAATATGC 2405
Query 735 TATGGTCGGACAGTTTGCTGAGG 757
| ||| ||||||||||||||||
Sbjct 2406 TTTGGGAGGACAGTTTGCTGAGG 2428
> AT3G03930.1 | Symbols: | protein kinase-related | chr3:1011414-1012810
REVERSE LENGTH=888
Length=888
Score = 706 bits (382), Expect = 0.0
Identities = 586/682 (86%), Gaps = 23/682 (3%)
Strand=Plus/Plus
Query 98 ACAACGTTGCAGACTCAAGACTTG-CACAGCATGTTGAGAAAGGT-AATGAGGATGGCCT 155
||||| ||||| | ||||| ||| | || |||| || |||||| || | |||||||||
Sbjct 203 ACAACATTGCAAATTCAAG-GTTGTCGCATCATGCAGAAAAAGGTAAAAG-GGATGGCCT 260
Query 156 TTTCGTAAGCTGTGTAGCATCAGCAGCTAATCTCTGGGCCCTCA-TCATGGATGCTGGGA 214
|||| |||||||||||||||||| |||||||||||||| ||| | ||||||||||||| |
Sbjct 261 TTTCATAAGCTGTGTAGCATCAGAAGCTAATCTCTGGG-CCTTAGTCATGGATGCTGGAA 319
Query 215 CTGGTTTCAGTTCTCAAGTTTATGAACTGTCCTCGGTCTTCCTGCACAAGGACTGGATTA 274
||||||||| ||||||||||||| || | || || |||||| | ||||||||||||||
Sbjct 320 CTGGTTTCACTTCTCAAGTTTATAAATTTTCTTCTACCTTCCTCCCCAAGGACTGGATTA 379
Query 275 TAG-AACAATGGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGC 333
| | |||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 380 T-GAAACAATGGGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGAGC 438
Query 334 TCGTTGGTTGTTATGGCTAAAGGAACTCCTTATACCCAGCAATCATACAAAGTCAGCAAC 393
|| ||||| |||||| | |||||||||| ||||| |||||||||||||||| | | ||
Sbjct 439 TCATTGGTCGTTATGTCAAAAGGAACTCGTTATATCCAGCAATCATACAAAACCGGTGAC 498
Query 394 TCATTTCCATTCAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATG 453
||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 499 TCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATG 558
Query 454 ACCACCGCTGGGAGTCGTTGGGAAGTAGTAATGTCCAGGAACTCAGGCTACTCTGAACAG 513
||||| | |||||| ||||||| ||||||||||||||||||||||||| ||||||||||
Sbjct 559 ACCACGGGTGGGAGCCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAG 618
Query 514 GTGGTGGAGCTTGACTTTTTGTACCCCAGTGAAGGA-ATACATCGAAGATGGGAAAGTGG 572
||| ||||| ||||||||||| |||| ||||||| | ||| ||||||| | |||||||||
Sbjct 619 GTGATGGAGGTTGACTTTTTGAACCCAAGTGAAG-ATATAAATCGAAGGTTGGAAAGTGG 677
Query 573 ATACAGGATAACATCAATGGCTGCAACAGCCGATCAAACAGCTTTTATATTGAGTATACC 632
||||| |||||||||||||||||||||||| |||||| ||||| ||||||||||||||||
Sbjct 678 ATACATGATAACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACC 737
Query 633 TAAACG-AAAAGTAACCGATGAAACCCAAGAGA-TTCTCCGCACTTCTGCCTTCCCAAG- 689
|| ||| |||| |||||||||||| |||||||| || | ||||||||| ||||||| ||
Sbjct 738 TAGACGTAAAA-TAACCGATGAAATCCAAGAGACTT-TACGCACTTCTTCCTTCCCTAGC 795
Query 690 TACCCATGTCAAGG------GGCA-AAAAATCTGTACATTGCATCAATATGCTATGGTCG 742
| || ||||||||| || |||||| ||| ||| |||||||||| ||||||||
Sbjct 796 T-CCTATGTCAAGGACAAATGGGGGAAAAATATGTTCATAACATCAATATGTTATGGTCG 854
Query 743 GACAGTTTGCTGAGGAAACATG 764
||||||||| | | ||||||||
Sbjct 855 GACAGTTTGATAATGAAACATG 876
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 38830995631
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5