BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340533
Length=1914
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter 4... 2689 0.0
AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter 3... 331 1e-89
AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein ... 246 5e-64
AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits... 209 7e-53
> AT3G03720.1 | Symbols: CAT4 | cationic amino acid transporter
4 | chr3:925612-930974 REVERSE LENGTH=2664
Length=2664
Score = 2689 bits (1456), Expect = 0.0
Identities = 1540/1581 (97%), Gaps = 4/1581 (0%)
Strand=Plus/Plus
Query 1 ATGAACAGTCTTGTCAGAAGGAAACAAGTTGATTCTGTTCATCTGATCAAAAACGATGGA 60
|||||||||||||| ||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct 604 ATGAACAGTCTTGTGAGAAGAAAACAAGTTGATTCTGTTCATCTTATCAAAAACGATGGA 663
Query 61 CCTCATCAGCTTGCCAAGAAACTATCCGCCGTTGATCTTGTCGCTATTGGAGTTGGGACA 120
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 664 CCTCATCAGCTTGCCAAGAAACTATCCGCCGTTGATCTTGTTGCTATTGGAGTTGGGACA 723
Query 121 ACAATTGGAGCAGGAGTGTATATTCTTGTGGGAACAGTAGCTAGAGAGCACACAGGACCT 180
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 724 ACAATTGGAGCAGGAGTGTATATTCTTGTGGGAACGGTAGCTAGAGAGCACACAGGACCT 783
Query 181 GCTCTTGCTGTATCATTCTTCATTGCTGGTGTAGCTGCTGCTCTCTCGGCCTGTTGTTAT 240
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 784 GCTCTTGCTGTATCATTCTTCATTGCTGGAGTAGCTGCTGCTCTCTCTGCCTGTTGTTAT 843
Query 241 GCTGAGCTTGCTTCTCGTTGTCCATCTGCTGGGAGTGCTTATCATTATGCATACATATGT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct 844 GCTGAGCTTGCTTCTCGTTGTCCATCTGCTGGGAGTGCTTATCATTATGCGTACATTTGT 903
Query 301 CTTGGAGAAGGGATTGCTTGGTTGGTTGGTTGGGCGCTGGTGTTGGATTATACAATTGGT 360
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 904 CTTGGAGAAGGGATTGCTTGGTTGGTTGGTTGGGCACTGGTGTTGGATTATACAATTGGT 963
Query 361 GGATCAGCCATTGCCCGTGGCATAACTCCAAATCTGGCATCATTTTTTGGTGGTTTGGAC 420
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 964 GGATCAGCCATTGCCCGTGGCATAACTCCAAATCTGGCATCTTTTTTTGGTGGTTTGGAC 1023
Query 421 AAACTTCCTGTGTTCTTAGCTCGACAAACTATACCCGGGGTTGGTATTGTGGTTGATCCA 480
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1024 AATCTTCCTGTGTTCTTAGCTCGACAAACTATACCCGGGGTTGGTATTGTGGTTGATCCA 1083
Query 481 TGTGCAGCACTTTTGATTATGATTGTCACGATACTACTATGTTTTGGGATAAAGGAGAGT 540
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1084 TGTGCTGCACTTTTGATTATGATTGTCACGATACTACTATGTTTTGGGATAAAGGAGAGT 1143
Query 541 TCATTAGTACAAGCAATTGTAACATCAGTGAATGTTTGCACCTTGGTTTTCATCATAGTA 600
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1144 TCAACAGTACAAGCAATTGTAACATCAGTGAATGTTTGCACCTTGGTTTTCATCATAGTA 1203
Query 601 GTTGGTGGATATTTAGCTTGCAAGACCGGATGGGTTGGATATGATCTTCCGAGTGGGTAT 660
|||||||||||||||||||||||||| |||||||||||||||||||| || ||||||||
Sbjct 1204 GTTGGTGGATATTTAGCTTGCAAGACTGGATGGGTTGGATATGATCTCCCCAGTGGGTAC 1263
Query 661 TTTCCTTTTGGACTAAATGGGATACTTGCCGGATCTGCTATAGTATTCTTCTCATACATT 720
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1264 TTTCCTTTTGGACTAAATGGGATACTTGCCGGATCTGCTGTAGTATTCTTCTCATACATT 1323
Query 721 GGATTTGATACTGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTTCCA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1324 GGATTTGATACTGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTTCCA 1383
Query 781 TTGGGAATCGGGATTGCATTACTGATATGCTGCATTTTATATATGCTTTTATCAGTAGTT 840
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1384 TTGGGAATCGGGATTGCATTACTGATATGCTGCATTTTGTATATGCTTTTATCAGTAGTT 1443
Query 841 ATTGTTGGATTAGTCCCATACTATTCATTGAATCCTGATACTCCTATCTCCTCTGCATTT 900
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1444 ATTGTTGGATTGGTCCCATACTATTCATTGAATCCTGATACTCCTATCTCCTCTGCATTT 1503
Query 901 GGAGACAGTGGGATGCAATGGGCAGCGTACATCTTAACCACTGGGGCAATAACTGCTCTA 960
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1504 GGAGACAGTGGGATGCAATGGGCAGCGTACATCTTAACCACTGGGGCAATAACTGCTCTA 1563
Query 961 TGCGCGAGTTTGTTGGGTTCCCTTCTGGCTCAGCCACGAATTTTCATGGCAATGGCTAGG 1020
|| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1564 TGTGCGAGTTTGTTGGGTTCCCTTCTGGCTCAGCCACGAATATTCATGGCAATGGCTAGG 1623
Query 1021 GATGGATTGTTGCCGGCTTTCTTTTCAGAAATTAGCCCACGAACTCAAGTACCAGTGAAA 1080
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1624 GATGGATTGTTGCCAGCTTTCTTTTCAGAAATTAGCCCACGAACTCAAGTACCAGTGAAA 1683
Query 1081 AGCACAATAGCTATTGGTGTGCTTGCCGCTGCACTCGCATTTTTCATGGATGTTGCACAG 1140
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1684 AGCACAATAGCTATTGGTGTTCTTGCCGCTGCACTCGCATTTTTCATGGATGTTGCACAG 1743
Query 1141 TTGTCCGAAATGGTTAGTGTAGGCACTCTAATGGCATTCACTGCCGTTGCAG-CATGTGT 1199
|||||||| ||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct 1744 TTGTCCGAGATGGTTAGTGTAGGCACTCTAATGGCATTCACTGCCGTTGCAGTC-TGTGT 1802
Query 1200 GCTAGTTCTTAGATATGTACCACCAGATGGAGTTCCCCTATCATCTTCCTCTCAAACTTT 1259
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1803 GCTAGTTCTTAGATATGTACCACCAGATGGAGTTCCCCTATCATCTTCCTCCCAAACTTT 1862
Query 1260 GAGTGATACCGATGAAAGTGGAGCTGAAACTGAAAATTTTCTTGTGGATGCTATAGAATC 1319
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1863 GAGTGATACCGATGAAAGTAGAGCTGAAACTGAAAATTTTCTTGTGGATGCTATAGAATC 1922
Query 1320 TTCTGATTCCCCTCTACTTGGCAATGAAACTGCACGAGATGAAAAGTATTTTGGAAAGAG 1379
||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||
Sbjct 1923 TTCTGATTCCCCTCTACTTGGAAATGAAACTGCTCGAGATGAAAAGTATTTTGGAAAGAG 1982
Query 1380 AAGAAAAATTGC-GTCCTGGAGTATAGCTCTTGTGTGCATAGGTGTGCTAGGTCTTGCTT 1438
||||||||||| | ||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1983 GAGAAAAATTGCTG-CCTGGAGTATAGCTCTTGTGTGCATAGGTGTCCTAGGTCTTGCTT 2041
Query 1439 CAGCAGCTTCGGCTGAGCGTCTTCCAAGTTTTCCTCGGTTCACTATATGTGGTGTCAGTG 1498
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2042 CAGCAGCTTCAGCTGAGCGTCTTCCAAGTTTTCCTCGTTTCACTATATGTGGTGTCAGTG 2101
Query 1499 CCGTCATCTTGCTTGGCAGTTTGATTACTCTTGGCTACATCGACGAGGATGAAGAAAGGC 1558
| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 2102 CAGTCATCTTGCTTGGCAGTTTGATTACTCTTGGCTACATTGACGAGGATGAAGAAAGGC 2161
Query 1559 ACAACTTTGGACACAAAGGAG 1579
|||||||||||||||||||||
Sbjct 2162 ACAACTTTGGACACAAAGGAG 2182
Score = 396 bits (214), Expect = 5e-109
Identities = 236/247 (96%), Gaps = 0/247 (0%)
Strand=Plus/Plus
Query 1664 GGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTAC 1723
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2182 GGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTAC 2241
Query 1724 TTGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGA 1783
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 2242 TTGATCATCAACATTGGAGCTGGGACATGGATCAGGGTCTTGATATGGCTACTTATTGGA 2301
Query 1784 AGCATGATCTATCTCTTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTT 1843
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2302 AGCATGATCTATATCTTCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTACGTT 2361
Query 1844 CCAAGGACGACTTGTACCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAAT 1903
|| | | ||||||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 2362 CCCACAATGACTTGTACGAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGATCAAT 2421
Query 1904 GCAGCAG 1910
|| ||||
Sbjct 2422 GCTGCAG 2428
> AT5G36940.1 | Symbols: CAT3 | cationic amino acid transporter
3 | chr5:14590166-14594384 FORWARD LENGTH=2241
Length=2241
Score = 331 bits (179), Expect = 1e-89
Identities = 641/857 (75%), Gaps = 59/857 (7%)
Strand=Plus/Plus
Query 97 CTTG-TCGCTATTGGAGTTGGGA-CAACAATTGGAGCAGGAGTGTATATTCTTGTGGGAA 154
|||| | || ||||| ||| ||| |||||||||||||||| || ||||||||||||||||
Sbjct 275 CTTGATTGCCATTGGTGTT-GGATCAACAATTGGAGCAGGGGTTTATATTCTTGTGGGAA 333
Query 155 CAGTAGCTAGAGAGCACACAGGACCTGCTCTTGCTGTATCATTC-TTCATTGCTGGTGTA 213
|||||||||||||||| ||||||||||||||||| |||| ||| || || ||||| |
Sbjct 334 CAGTAGCTAGAGAGCATTCAGGACCTGCTCTTGCTTTATCCTTCCTT-ATAGCTGGAATT 392
Query 214 GCTGCTGCTCTCTCGGCCTGTTGTTATGCTGAGCT-TGCTTCTCGTTGTCCATCTGCTGG 272
||||||| || || || | ||||||||| || || | || ||||| ||| ||||||||
Sbjct 393 TCTGCTGCCCTTTCTGCGTTTTGTTATGCGGAACTAT-CTAGTCGTTTTCCCTCTGCTGG 451
Query 273 GAGTGCTTATCATTATGCATACATATGTC-TTGGAGAAGG-GATTGCTTGGTTGGTTGGT 330
|||||| ||||||||| | ||||| || | |||| ||||| | |||| |||||| ||||
Sbjct 452 GAGTGCCTATCATTATTCTTACATTTG-CATTGGTGAAGGTG-TTGCGTGGTTGATTGGC 509
Query 331 TGGGCGCTGGTGTTGGATTATACAATTGGTGGATCAGCCA-TTGCCCGTGGCATAACTCC 389
||||||||| | ||||| || ||||||||||| ||| | | ||||||| |||||| ||||
Sbjct 510 TGGGCGCTGATTTTGGAATACACAATTGGTGGTTCAAC-AGTTGCCCGCGGCATATCTCC 568
Query 390 AAATCTGGCA-TCATTTTTTGGTGGTTTGGACAAACTTCCTGTGTTCTTAGCTCGACAAA 448
|||||||||| | ||||| |||||| || || ||| | |||||||| ||
Sbjct 569 AAATCTGGCAATGATTTTC-GGTGGTGAAGATTGTCTGCCTACAATATTAGCTCGTCAT- 626
Query 449 CTA-TACCCGGGG-TTGGTATTGTGGTTGATCCATGTGCAGCACTTTTGATTATG-ATTG 505
| | | ||| || ||| |||||| ||||| || ||||| || | | | | | ||||
Sbjct 627 CAAAT-CCCAGGCCTTGATATTGTTGTTGACCCGTGTGCTGCTGTGCT-AGTGTTCATTG 684
Query 506 TCAC-GATACTACTATGTT---TTGG-GATAAAGGAGAGTTCATTAG-TACAAGCAATTG 559
| || | ||| | |||| |||| | |||||||||| |||| | | || | |||||
Sbjct 685 TAACAGG-ACT--T-TGTTGCCTTGGAG-TAAAGGAGAGCACATTTGCT-CAGGGAATTG 738
Query 560 TAACATCAGTGAATGT-TT-G-CACCTTGGT-TTTCATCATAGTAGTTGGTGGATATTTA 615
||||| ||| ||||| || | || | | | ||| ||||||||| ||| | |||||
Sbjct 739 TAACAACAGCAAATGTCTTTGTCA--T-GATATTTG-TCATAGTAGCTGGAAGCTATTTG 794
Query 616 -GCTTGCAAGACCGGATGGGTTGGATATGATCTTCCGA-GTGGGTATTTTCCTTTTGGAC 673
| || |||||| || |||||||| ||||| ||||| | | ||||||||||||| ||
Sbjct 795 TGTTT-CAAGACAGGTTGGGTTGGTTATGAACTTCCAACG-GGGTATTTTCCTTACGGGG 852
Query 674 TAAATGGGATACTTGCCGGATCTGCTA-TAGTATTCTTCT-CATACATTGGATTTGATAC 731
| |||| || ||| | |||||||||| | || ||||| | | ||||| || ||||||||
Sbjct 853 TTGATGGAATGCTTACTGGATCTGCTACT-GTCTTCTT-TGCCTACATCGGGTTTGATAC 910
Query 732 TGTAACTAGTACGGCTGAGGAGGTGAAAAATCCTCAAAGGGATCTT-CCATTGGGAATCG 790
|| | |||| ||| ||||||||||||||||| | ||||| || || | || || |
Sbjct 911 AGTTGCAAGTATGGCAGAGGAGGTGAAAAATCCCCGGCGGGAT-TTACCGCTCGGTATTG 969
Query 791 GGATTGCATTACTGATATGCTGCATTT--TATATATGCTTTTATCAGTAGTTATTGTTGG 848
||||| | | ||| | || || ||| | || ||| | | || || |||||||||||
Sbjct 970 GGATTTCGCTCCTGCTTTGTTG--TTTGCTGTACATGATGGTGTCTGTTGTTATTGTTGG 1027
Query 849 ATTAGTCCCATACTATTC-ATTGAATCCTGATACTCCTATCTCCTCTGCATTTGG-AGAC 906
||||| || || ||| | || || ||||| ||||| || || || |||||| || |
Sbjct 1028 TTTAGTGCCGTATTATGCTATGGAC-CCTGACACTCCAATATCATCCGCATTTTCTAGTC 1086
Query 907 AGTGGGATGCAATGGGC 923
| ||| || ||||||||
Sbjct 1087 A-TGGAATTCAATGGGC 1102
> AT2G38980.1 | Symbols: | pseudogene, similar to fiber protein
Fb12, blastp match of 53% identity and 1.2e-13 P-value to
GP|25992543|gb|AAN77151.1||AF531371 fiber protein Fb12 {Gossypium
barbadense} | chr2:16277009-16279354 REVERSE LENGTH=2346
Length=2346
Score = 246 bits (133), Expect = 5e-64
Identities = 157/169 (93%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 1740 GAGCTGGGACATGGATCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCT 1799
|||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||
Sbjct 2006 GAGCTGGGACATGGATCAGGGTCTTGGTATCGCTACTTATCGGAAGCATGATCTGTCTCT 2065
Query 1800 TCTATGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTTCCAAGGACGACTTGTA 1859
||| ||||||||||||| | || |||||||||| ||||| |||||||| ||||||||||
Sbjct 2066 TCTGTGGCCGATCTCACTGTTTGCTGAACAATGTGGTTTACGTTCCAACAACGACTTGTA 2125
Query 1860 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTCAATGCAGC 1908
|||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2126 CCAGAAAAACAACAGATCATCTTGCTTAAGATTGGTGGTTTAATGCAGC 2174
Score = 132 bits (71), Expect = 1e-29
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1664 GGGTTTCTCTGCCCATTCGTCCCATACCTTCCAGTTCTTTGCATATTGATCAACACCTAC 1723
|||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1850 GGGTTTCTCTGCTCATTCGTCCCATACCTTCCAGTTCTTTGCATTTTGATCAACACCTAC 1909
Query 1724 TTGATCATCAACATTGG 1740
|||||||||||||||||
Sbjct 1910 TTGATCATCAACATTGG 1926
> AT3G04184.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr3:1100085-1100246
REVERSE LENGTH=162
Length=162
Score = 209 bits (113), Expect = 7e-53
Identities = 135/145 (93%), Gaps = 3/145 (2%)
Strand=Plus/Plus
Query 1746 GGA-CATGGA-TCAGGGTCTTGGTATGGCTACTTATTGGAAGCATGATCTATCTCTTCTA 1803
||| || ||| |||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 19 GGATCAGGGATTCAGGGTCTTGGTATGGCTATTTACTGGAAGCATGATCTATCTCTTCTA 78
Query 1804 TGGCCGATCTCACAGCTTACTGAACAATGCGGTTTGCGTTCCAAGGACGACTTGTACCAG 1863
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||| |||||
Sbjct 79 TGGCCGATCTCACAGCTTACTGAACAATGTGGTTTACGTTCCAACGACGACTTGAACCAG 138
Query 1864 AAAAACAACAGATCATCTTGCTTAA 1888
|||| ||||||||||||||||||||
Sbjct 139 AAAA-CAACAGATCATCTTGCTTAA 162
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94778628960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5