BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340538
Length=846
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03760.1 | Symbols: LBD20 | LOB domain-containing protein 20... 876 0.0
> AT3G03760.1 | Symbols: LBD20 | LOB domain-containing protein
20 | chr3:943557-944834 FORWARD LENGTH=1058
Length=1058
Score = 876 bits (474), Expect = 0.0
Identities = 508/525 (97%), Gaps = 0/525 (0%)
Strand=Plus/Plus
Query 1 ATGGCTGATCAGCAGCGAGGCCACCACACCTCAGATTCTCGCCGGAAATCACTAGCCGGA 60
|||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct 76 ATGGCTGATCAGCAGCGAGGCCACAACACCTCAGATTCTCGCCGGAAATCTCTAGCCGGA 135
Query 61 AAACGAACCTCACAACAAACTCCGACGCCGTCACTTAGTTCCGGCGGAGTAGCCATGGCG 120
||| |||||||||| |||||||||||| | ||||||||||||||||||||| |||||||
Sbjct 136 AAAAGAACCTCACAGCAAACTCCGACGTCATCACTTAGTTCCGGCGGAGTATCCATGGCA 195
Query 121 GCTGCGACGACGGGGACAGGGACGGCGTCTCCGTGTGGGGCTTGCAAGTTCTTGAGAAGG 180
||||| |||||||||||||||||||| || || |||||||||||||||||||||||||||
Sbjct 196 GCTGCAACGACGGGGACAGGGACGGCTTCGCCTTGTGGGGCTTGCAAGTTCTTGAGAAGG 255
Query 181 AAGTGTGTGAGTGGATGCATTTTCGCTCCACATTTCGGGTCAGACCAAGGAGCGGCTAGG 240
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 256 AAGTGTGTGAGTGGATGCATTTTCGCTCCACATTTTGGGTCAGACCAAGGAGCGGCTAGG 315
Query 241 TTCGCGGCCGTTCATAAGGTTTTTGGAGCCAGCAACGTGTCGAAACTGTTGCACCATATT 300
|||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 316 TTCGCGGCGGTTCATAAGGTTTTCGGAGCCAGCAACGTGTCGAAACTGTTGCATCATATT 375
Query 301 CCGGTGAACCGTCGTCATGATGCGGTGGTTACGATCTCATATGAGGCTCAAGCTAGGCTC 360
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 376 CCGGTGAACCGTCGTCATGATGCGGTGGTTACGATCTCATACGAGGCTCAAGCTAGGCTC 435
Query 361 TCTGATCCTGTCTATGGCTGCGTCTCAACCATCCTTGCTCTCCAACAACAGGTGGCCTCG 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 436 TCTGATCCTGTCTATGGCTGCGTCTCAACCATCCTTGCTCTCCAACAACAGGTGGCCTCG 495
Query 421 CTACAGGCGGAGTTATCGGTGGTGCAATCACAACTGATAAACAGTAGAGTCGCAATGGCC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 496 CTACAGGCGGAGTTATCGGTGGTGCAATCACAACTGATAAACAGTAGAGTCGCAATGGCC 555
Query 481 AACGTTATGcaacaacaaactcatcaccaacaacagcaacaacaa 525
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 556 AACGTTATGCAACAACAAACTCATCACCAACAACAGCAACAACAA 600
Score = 497 bits (269), Expect = 6e-140
Identities = 315/336 (94%), Gaps = 7/336 (2%)
Strand=Plus/Plus
Query 516 gcaacaacaaactcatcaccaacaacagcaacaacaaTTAGTCGTTATGCCACAACCCGA 575
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 564 GCAACAACAAACTCATCACCAACAACAGCAACAACAATTAGTCGTTATGCAACAACCCGA 623
Query 576 ATACTCCAACAACTCCTCCGCCTCCACCACTCTCGCCGGAGCCGCCATGAACAGCTTCAC 635
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 624 ATACTCCAACAACTCCTCCGCCTCCACCACTCTCGCCGGAGCCGCCATGAACAGCTTCAC 683
Query 636 CGTGGCGGCGGAGGTAGCAGCGGTCAGCTATGACGTCATGGCTCCGACTAACTTAGAACA 695
| || |||| || | |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 684 CATGACGGCAGATGCAGCAGCCGTCAGCTATGACGTCATGGCTCCGACTAACTTAGAACA 743
Query 696 TTCATTGCAGCCAATGCCACCGCATCAGCAAAGGAGAGGAGAT---CAGCATGAGGATGA 752
||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 744 TTCGTTGCAGCCAATGCCACCGCATCAGCAAAGGAGAGGAGATTATCAGCATGAGGATGA 803
Query 753 GGAAGAGAGCGGTGCTGATTTTTCGGTGGCTGTTGGATCGGCGGCGGTAGCTTCAGA-GG 811
|||||||||||||||||||||||||||||||||||||||| ||||||| ||||| || ||
Sbjct 804 GGAAGAGAGCGGTGCTGATTTTTCGGTGGCTGTTGGATCGACGGCGGTGGCTTC-GAAGG 862
Query 812 CAATATTTCCGGCTGATGG-TTATCACCGGAGATGA 846
||||||||||| || || || |||||||||||||
Sbjct 863 TTATATTTCCGGCGGA-GGATTTTCACCGGAGATGA 897
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41242234687
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5