BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg340541

Length=537
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G03776.1 | Symbols:  | hydroxyproline-rich glycoprotein fami...   340    6e-93


> AT3G03776.1 | Symbols:  | hydroxyproline-rich glycoprotein family 
protein | chr3:954144-954760 REVERSE LENGTH=534
Length=534

 Score =  340 bits (184),  Expect = 6e-93
 Identities = 214/229 (93%), Gaps = 0/229 (0%)
 Strand=Plus/Plus

Query  101  ATGTGAGTTTCATGATTGACAAGCAAAGCAAAACGGTATATCTATCTGGAAAAATCGATC  160
            |||||||||||||||| ||||||||||||||||| ||||||||||| |||||| |||| |
Sbjct  53   ATGTGAGTTTCATGATCGACAAGCAAAGCAAAACAGTATATCTATCGGGAAAAGTCGACC  112

Query  161  CACAAGTAATACTTGAAAAGATTACAAAAGCAGGCAAAAAAGCAGTTATAGTATGGAGCA  220
            ||||| ||||||||||||||||||||||||||||||||||||| |||||| |||||||||
Sbjct  113  CACAAATAATACTTGAAAAGATTACAAAAGCAGGCAAAAAAGCGGTTATATTATGGAGCA  172

Query  221  ATAATGGACAGAGTAAGCAGCCGGAAAATCGAAAAGACCATTTGATGGAACAATGTTATG  280
            |||| |||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct  173  ATAACGGACAGAGTAAGCAGCCGGAAAATCGGAAAGACCATTTGATGGAACAACGTTATG  232

Query  281  CGTCGGGATACATGAATGTTCCTAATGGTTTCTCAAACTATCCTCCGCC  329
            |||||||| |||| ||||||||| |||||||||||||||||| ||||||
Sbjct  233  CGTCGGGACACATAAATGTTCCTGATGGTTTCTCAAACTATCATCCGCC  281


 Score =  287 bits (155),  Expect = 8e-77
 Identities = 226/258 (88%), Gaps = 13/258 (5%)
 Strand=Plus/Plus

Query  288  ATACATGAATGTTCCTAATGGTTTCTCAAACTATCCTCCGCCTAATTATTGGATGAATCA  347
            ||||||||||| ||||||||||||||||||||||| || |||  ||||||||||||||||
Sbjct  282  ATACATGAATGGTCCTAATGGTTTCTCAAACTATCATCTGCCGGATTATTGGATGAATCA  341

Query  348  ACCGCAACCATACAA-CCACACTTTATGT---CCTCCACCACCA---TATACACGGCAGC  400
            ||| |||| |||||| || |||| |||||   || |||||||||   ||| |||| ||| 
Sbjct  342  ACCTCAACTATACAATCC-CACTATATGTCCCCCACCACCACCACCGTATCCACGTCAGG  400

Query  401  TCCATCCGCAGccaccaccaccaccaccGTACGAATTCCACCAGAAAGAACCGGTGGCTA  460
            ||||||||||||||||| |||||||||||||| ||||||| |||||||||||||||||||
Sbjct  401  TCCATCCGCAGCCACCAGCACCACCACCGTACAAATTCCATCAGAAAGAACCGGTGGCTA  460

Query  461  AGAGTTTTCCGCCTACACCAGTTCCGCCTAAAAACTTTACGATGGGAGATTTGACA-CTA  519
            ||||||| ||||||||||||| ||||||||||||||||||||||||||||||| || |||
Sbjct  461  AGAGTTTCCCGCCTACACCAGCTCCGCCTAAAAACTTTACGATGGGAGATTTG-CAACTA  519

Query  520  GGTTGCATGATAATGTGA  537
              | ||  ||||||||||
Sbjct  520  --T-GCCGGATAATGTGA  534



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25719883264


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5