BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340552
Length=867
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03930.1 | Symbols: | protein kinase-related | chr3:1011414... 1253 0.0
AT3G03940.1 | Symbols: | Protein kinase family protein | chr3:... 833 0.0
AT5G18190.1 | Symbols: | Protein kinase family protein | chr5:... 551 4e-156
> AT3G03930.1 | Symbols: | protein kinase-related | chr3:1011414-1012810
REVERSE LENGTH=888
Length=888
Score = 1253 bits (678), Expect = 0.0
Identities = 809/872 (93%), Gaps = 10/872 (1%)
Strand=Plus/Plus
Query 1 ATGAGACCACCGATGGGCAGCGGAAGAACTGGTGGTGGCGGACGTGATTCATGCCCTGAG 60
|||||||||||||| |||||||||||| ||||| |||||||| ||||||||||||||||
Sbjct 1 ATGAGACCACCGATTAGCAGCGGAAGAATTGGTGATGGCGGACTTGATTCATGCCCTGAG 60
Query 61 AAGAAAGAGAAAGAGAAAGACCCAACAAGTAGACTTTGCTCGGATTTGAGTGATTTACAA 120
||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||| |
Sbjct 61 AAGAAAGAGGAAGAGAAAGACTCAACAAGTAGACTTTGTTCGGATTTGAGTGATTTACGA 120
Query 121 ATAGAAAAAATCGCAAGTACTCCTACGTTCCAATGGATTTCAGTCTATAACAAACGTCCT 180
||||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||
Sbjct 121 ATAGAAAGAATCGGAAGTACTCCTGCGTTCCAATGGATTTCAGTCTATACCAAACGTCCT 180
Query 181 CCTATGAAACAGAGATTTCATCACAACGTAGCAAATTCAAGGTTGCAC-CATCATGTAGA 239
|||||||||||||||||||| |||||| | ||||||||||||||| | ||||||| |||
Sbjct 181 CCTATGAAACAGAGATTTCACCACAACATTGCAAATTCAAGGTTG-TCGCATCATGCAGA 239
Query 240 GAAAGCTAACAA-TGATGGCCTTTTTATAAGCTGTGTAGCATCAGAAGCTAATCTATGGG 298
|||| ||| || ||||||||||| ||||||||||||||||||||||||||||| ||||
Sbjct 240 AAAAGGTAA-AAGGGATGGCCTTTTCATAAGCTGTGTAGCATCAGAAGCTAATCTCTGGG 298
Query 299 CATTCGTCGTGGATAAAGGGACTGGTTTCACTTCTCAAGTTTATACAGTTATC-TC-AGC 356
| || ||| ||||| || ||||||||||||||||||||||||| | || || || | |
Sbjct 299 CCTTAGTCATGGATGCTGGAACTGGTTTCACTTCTCAAGTTTATA-AATTTTCTTCTA-C 356
Query 357 CTTCCTCCCCAAGGACTGGATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCAT 416
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CTTCCTCCCCAAGGACTGGATTATGAAACAATGGGAGAAGAACTACTATATCAGTTCCAT 416
Query 417 AGCTGGTGCAAATAATGGGGGCTCGTTGGTCGTTATGTCAAAAGGAACTCTTTATA-CCA 475
||||||||||||||||||| |||| ||||||||||||||||||||||||| ||||| |||
Sbjct 417 AGCTGGTGCAAATAATGGGAGCTCATTGGTCGTTATGTCAAAAGGAACTCGTTATATCCA 476
Query 476 AGCAATCATACAAAACCAGCCACTCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAG 535
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||
Sbjct 477 -GCAATCATACAAAACCGGTGACTCAATTCCATTAAAGTGGATGGATAAAAAGTGGAAAG 535
Query 536 AAGGTTTTCATGTAACATCCATGACCACTGCTGGGAGTGGTTGGGGTGTAGTAATGTCCA 595
|||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||
Sbjct 536 AAGGTTTTCATGTAACATCCATGACCACGGGTGGGAGCCGTTGGGGTGTAGTAATGTCCA 595
Query 596 GGAACTCAGGCTTCTCTGAACAGGTGATGGAGCTTGACTTCTTGAACCCAAGTGAAGATA 655
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 596 GGAACTCAGGCTTCTCTGAACAGGTGATGGAGGTTGACTTTTTGAACCCAAGTGAAGATA 655
Query 656 TAAATCGAAGGTTGGAGAGTGGATACAGGATAACATCAATGGCTGCAACAGCTGATCAAG 715
|||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||
Sbjct 656 TAAATCGAAGGTTGGAAAGTGGATACATGATAACATCAATGGCTGCAACAGCTGATCAAG 715
Query 716 CAGCTCTTATATTGAGTATACCCAAACGAAAAATAACCGATGAAATCCAAGAGACTTTAC 775
|||||||||||||||||||||| | ||| |||||||||||||||||||||||||||||||
Sbjct 716 CAGCTCTTATATTGAGTATACCTAGACGTAAAATAACCGATGAAATCCAAGAGACTTTAC 775
Query 776 GTACTTCTTCCTTCCCTAGCTCCTATATCAAGGACAAATGGGAGAAAAATATGTTCATAA 835
| |||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||
Sbjct 776 GCACTTCTTCCTTCCCTAGCTCCTATGTCAAGGACAAATGGGGGAAAAATATGTTCATAA 835
Query 836 CATCAATATGTTATGGTCGGACAGTTTGCTAA 867
|||||||||||||||||||||||||||| |||
Sbjct 836 CATCAATATGTTATGGTCGGACAGTTTGATAA 867
> AT3G03940.1 | Symbols: | Protein kinase family protein | chr3:1014025-1019224
REVERSE LENGTH=2862
Length=2862
Score = 833 bits (451), Expect = 0.0
Identities = 632/719 (88%), Gaps = 14/719 (2%)
Strand=Plus/Plus
Query 154 TGGATTTCAGTCTATAACAAACGTCC-TCCTATGAAACAGAGATTTCATCACAACGTAGC 212
||||||||||||||||| ||| || ||||||||||||||||| |||| ||||||| ||
Sbjct 1762 TGGATTTCAGTCTATAATGCACG-CCGTCCTATGAAACAGAGATATCATTACAACGTTGC 1820
Query 213 A-AATTCAAG-GTTGCACCATCATGTAGAGAAAGCTAACAATGATGGCCTTTTTATAAGC 270
| | || ||| ||||| || ||||| ||||||| ||| | ||||||||||| ||||||
Sbjct 1821 AGACTT-AAGACTTGCA-CAGCATGTTGAGAAAGGTAATGAGGATGGCCTTTTCATAAGC 1878
Query 271 TGTGTAGCATCAGAAGCTAATCTATGGG-CATTCGTCGTGGATAAAGGGACTGGTTTCAC 329
|||||||||||| ||||||||| |||| || || || ||||| |||||||||||||
Sbjct 1879 TGTGTAGCATCATCAGCTAATCTCTGGGCCA-TCATCATGGATGCTGGGACTGGTTTCAG 1937
Query 330 TTCTCAAGTTTATACAGTTAT-CTCAGCCTTCCTCCCCAAGGACTGGATTATGAAACAAT 388
||||||||||||| | | | ||||| |||||| | |||||||||||| ||| ||||||
Sbjct 1938 TTCTCAAGTTTAT-GAACTGTCCTCAGTCTTCCTGCACAAGGACTGGATCATGGAACAAT 1996
Query 389 GGGAGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGGGCTCGTTGGTCG 448
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |
Sbjct 1997 GGGAAAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGAAGCTCGTTGGTTG 2056
Query 449 TTATGTCAAAAGGAACTCTTTATACCAAGCAATCATACAAAACCAGCCACTCAATTCCAT 508
||||| | |||||||||| ||||||| ||||||| |||||| |||| ||||| ||||||
Sbjct 2057 TTATGGCTAAAGGAACTCCTTATACCCAGCAATCTTACAAAGTCAGCGACTCATTTCCAT 2116
Query 509 TAAAGTGGATGGATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACTGCTG 568
| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2117 TCAAGTGGATAAATAAAAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACCGCTG 2176
Query 569 GGAGTGGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAGGTGATGGAGC 628
||||| ||||||||||||||||||||||||||||||||| ||||||||||||| ||||||
Sbjct 2177 GGAGTCGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTACTCTGAACAGGTGGTGGAGC 2236
Query 629 TTGACTTCTTGAACCCAAGTGAA-GATATAAATCGAAGGTTGGAGAGTGGATACAGGATA 687
||||||||||| ||||||||||| || ||| ||||||||| ||| |||||||||||||||
Sbjct 2237 TTGACTTCTTGTACCCAAGTGAAGGA-ATACATCGAAGGTGGGAAAGTGGATACAGGATA 2295
Query 688 ACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACCCAAACGAAAA 747
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 2296 ACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTTATATTGAGTATACCTAAACGAAAA 2355
Query 748 ATAACCGATGAAATCCAAGAGACTTTACGTACTTCTTCCTTCCCTAGCT-CCTATATCAA 806
||||||||||||| |||||||||| | || |||||| ||||||| || | || || ||||
Sbjct 2356 ATAACCGATGAAACCCAAGAGACTCTCCGGACTTCTGCCTTCCCAAG-TACCCATGTCAA 2414
Query 807 GGACAAATGGGAGAAAAATATGTTCATAACATCAATATGTTATGGTCGGACAGTTTGCT 865
||| ||||||| ||||||| ||| ||| |||||||||| |||||||||||||||||||
Sbjct 2415 GGAGAAATGGGCGAAAAATCTGTACATTGCATCAATATGCTATGGTCGGACAGTTTGCT 2473
> AT5G18190.1 | Symbols: | Protein kinase family protein | chr5:6009967-6014689
REVERSE LENGTH=2674
Length=2674
Score = 551 bits (298), Expect = 4e-156
Identities = 586/724 (81%), Gaps = 24/724 (3%)
Strand=Plus/Plus
Query 154 TGGATTTCAGTCTATAACAAACGTCCTCCTATGAAACAGAGATTTCATC-ACAACGTAGC 212
||||| ||||||||||| |||| ||| ||||||||||||| ||| | ||||||| ||
Sbjct 1713 TGGATCTCAGTCTATAATGCTCGTCGTCCCATGAAACAGAGATATCA-CTACAACGTTGC 1771
Query 213 AAATTCAAGGTTGCACCATCATGTAGAGAAAGCTAACAATGATGGCCTTTTTATAAGCTG 272
| | ||||||||||| || |||||| |||| | ||| | ||||||||||| || |||||
Sbjct 1772 AGACTCAAGGTTGCATCAGCATGTACAGAAGGGTAATGAGGATGGCCTTTTAATTAGCTG 1831
Query 273 TGTAGCATCAGAAGCTAATCTATGGGCATTCGTCGTGGATAAAGGGACTGGTTTCACTTC 332
||||||||||| ||||||||| ||||| || | ||||| |||||||| ||||| ||
Sbjct 1832 TGTAGCATCAGCAGCTAATCTCTGGGCCCTCATAATGGATGCTGGGACTGGATTCACCTC 1891
Query 333 TCAAGTTTATACAGTTATC-TCAGCCTTCCTCCCCAAGGACTGGATTATGAAACAATGGG 391
|||||||||| | || || | | |||||| | |||||||||||||||| |||||||||
Sbjct 1892 TCAAGTTTAT-GAATTGTCAACTGTCTTCCTTCACAAGGACTGGATTATGGAACAATGGG 1950
Query 392 AGAAGAACTACTATATCAGTTCCATAGCTGGTGCAAATAATGGGGGCTCGTTGGTCGTTA 451
| |||||||||||||||||||||||||||||| || |||| ||| ||| || || ||||
Sbjct 1951 AAAAGAACTACTATATCAGTTCCATAGCTGGTTCAGATAACGGGAACTCATTAGTTGTTA 2010
Query 452 TGTCAAAAGGAAC-TCTTTATAC-CAAGCAATCATACAAAACCAGCCACTCAATTCCATT 509
||||||||||||| |||| |||| || |||||| |||||| |||| |||| |||| ||
Sbjct 2011 TGTCAAAAGGAACGTCTT-ATACTCA-GCAATCTTACAAAGTCAGCGACTCTTTTCCTTT 2068
Query 510 AAAGTGGATGGATAA-AAAGTGGAAAGAAGGTTTTCATGTAACATCCATGACCACTGCTG 568
|||||||| | || ||| |||||||||| ||| |||||||| |||||||| |||||||
Sbjct 2069 CAAGTGGATAAACAAGAAA-TGGAAAGAAGATTTCCATGTAACCTCCATGACAACTGCTG 2127
Query 569 GGAGTGGTTGGGGTGTAGTAATGTCCAGGAACTCAGGCTTCTCTGAACAGGT-GATGGAG 627
||| | |||||||||| |||||||| ||||| || |||| |||||| ||||| | |||||
Sbjct 2128 GGAATCGTTGGGGTGTGGTAATGTCGAGGAATTCTGGCTACTCTGATCAGGTCG-TGGAG 2186
Query 628 CTTGACTTCTTGAACCCAAGTGAAG-ATATAAATCGAAGGTTGGAGAGTGGATACAGGAT 686
|| ||||| ||| ||||||| || | | ||| || | |||| ||| ||||| || |||||
Sbjct 2187 CTCGACTTTTTGTACCCAAGCGATGGA-ATACATAGGAGGTGGGAAAGTGGGTATAGGAT 2245
Query 687 AACATCAATGGCTGCAACAGCTGATCAAGCAGCTCTT-ATATTGAGTATACCCAAACGAA 745
|||||||||||| ||||| || |||||||||||| || ||||| || |||| ||||| |
Sbjct 2246 AACATCAATGGCAGCAACTGCAGATCAAGCAGCT-TTCATATTAAGCGTACCAAAACGTA 2304
Query 746 AAATAACCGATGAAA-TCCAAGAGACT-TTACGTACTTCTTCCTTCCCTAGCTC-CTATA 802
|||| | ||||||| || |||||||| || || || | |||| || ||| | | ||
Sbjct 2305 AAATGATGGATGAAACTC-AAGAGACTCTT-CGCACCACCGCCTTTCCAAGCACTC-ATG 2361
Query 803 TCAAGGACAAATGGGAGAAAAATATGTTCATAACATCAATATG-TTATGGTCGGACAGTT 861
||||||| ||||||| ||||||| ||| ||| |||||||||| || ||| ||||||||
Sbjct 2362 TCAAGGAAAAATGGGCGAAAAATCTGTACATTGCATCAATATGCTT-TGGGAGGACAGTT 2420
Query 862 TGCT 865
||||
Sbjct 2421 TGCT 2424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42297151774
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5