BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340556
Length=1668
Score E
Sequences producing significant alignments: (Bits) Value
AT3G03970.1 | Symbols: | ARM repeat superfamily protein | chr3... 2573 0.0
> AT3G03970.1 | Symbols: | ARM repeat superfamily protein | chr3:1027997-1030592
REVERSE LENGTH=1946
Length=1946
Score = 2573 bits (1393), Expect = 0.0
Identities = 1581/1672 (95%), Gaps = 11/1672 (1%)
Strand=Plus/Plus
Query 1 ATGGGGAGAAATCTTGGTTCGGCATTTAGACAAGAGTTGGCTAATCTTGACAAAGATCCT 60
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 135 ATGGGAAGAAATCTTGGTTCGGCATTTAGACAAGAGTTGGCTAATCTTGACAAAGATCCA 194
Query 61 GATTCCCACAAGGCTGCAATGAGAAATTTGAGATCGATTGTTAAAGATTTGGATGCAAAT 120
|||||||||||| |||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 195 GATTCCCACAAGACTGCAATGAGCAATTTGAGATCGATTGTGAAAGATTTGGATGCAAAG 254
Query 121 GTGATTCATGTGTTTGTTTCTCAGCTTTCTGAAGTCAAAGAGATT-GGTTCTGAGTCTGG 179
||| ||||||| |||||| |||| |||||||| |||||||||||| |||| ||||||||
Sbjct 255 GTGGTTCATGTTTTTGTTGCTCAACTTTCTGATGTCAAAGAGATTGGGTT-GGAGTCTGG 313
Query 180 TGGTTACACAGTTTCTCTCTTTGAAGACCTTGCTCGTGCTCATGGAGTTCAA-ATTGCTC 238
||||||||| || |||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct 314 TGGTTACACTGTATCTCTCTTTGAAGACCTTGCTCGTGCTCATGGAG-TCAAGATTGCTC 372
Query 239 CTCACGTAGACATTATCATGTCGGCGATCATAAGGACATTGAGTTCCAGTGAAGGGTCTC 298
|||| |||||||||||||| ||||||| ||||| |||||||| |||||||||||||||
Sbjct 373 CTCATATAGACATTATCATGCCGGCGATTATAAGAACATTGAGCTCCAGTGAAGGGTCTT 432
Query 299 TACGTATTCAACAGGCTTGCTCAAAGGCGGTAGCTGCTATGGCTAGATATGGAATTGATC 358
||||| |||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct 433 TACGTGTTCAACAGGCTTGCTCAAGGGCAGTAGCTGCTATGGCTAGATATGGAATTGATC 492
Query 359 CTACAACACCGGAAGATAAGAAAATGAATGTGGTTCATTCTCTTTGTAAGCCACTCTCTG 418
|||||||||| ||||||||||||| ||||||| ||||||||||||| |||||||||||||
Sbjct 493 CTACAACACCAGAAGATAAGAAAACGAATGTGATTCATTCTCTTTGCAAGCCACTCTCTG 552
Query 419 ATTCTCTTATAGATTCGCAACATCAACAGCATCTTGCTTTGGGATCTGCTCTTTGCTTGA 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 553 ATTCTCTTATAGATTCGCAACATCAACAGCATCTTGCTTTGGGATCTGCTCTTTGCTTGA 612
Query 479 AGTCACTTGTGGATTGCGATAATTGGCGATCTGCTTCTCGTGAAATGGTTAATAATGTTT 538
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 613 AGTCACTTGTGGATTGCGATAATTGGCGATCTGCTTCTAGTGAAATGGTTAATAATGTTT 672
Query 539 GTCAAAGCTTAGCTGTTGCTCTTGAAGCCACTTCAAGTGAAGCTAAGTCTCATATGGCAC 598
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 673 GTCAAAGCTTAGCTGTTGCTCTTGAAGCTACTTCAAGTGAAGCTAAGTCTCATATGGCAC 732
Query 599 TTGTCATGGCACTTTCCAAGCACAACCCTTTTACTGTCGAAGCATATGCAAGGCTTTTTG 658
|||| |||||||||||||||||||| |||||||||||||| |||||||||||||||||||
Sbjct 733 TTGTTATGGCACTTTCCAAGCACAATCCTTTTACTGTCGAGGCATATGCAAGGCTTTTTG 792
Query 659 TGAAGTCGGGTCTGAGGATTCTGGATTTAGGTGTTGTTGAGGGAGATTCTCAGAAACGGC 718
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 793 TGAAGTCGGGTCTGAGGATTCTGGATTTAGGTGTTGTTGAGGGAGATTCTCAGAAACGGC 852
Query 719 TTTTAGCTATACAGATGCTCAACTTTCTGATGAAGAATCTGAATCCCAAGAGTATTTGTT 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 853 TTTTAGCTATACAGATGCTCAACTTTCTGATGAAGAATCTGAATCCCAAGAGTATTTCTT 912
Query 779 CTGAGTTGGAGCTTATATATCAAGAGATGGAGAAACACCAAAAAGATCAGATGCATTATG 838
||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct 913 CTGAGTTAGAGCTTATATATCAAGAGATGGAGAAATACCAAAAAGATCAG---CATTATG 969
Query 839 TCAAAATGGCAGCTCATGAAACCATGAGACAAGCAGAGAGATTAATAGGTGAGGCAGATC 898
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 970 TCAAAATGGCAGCTCATGAAACCATGAGACAAGCAGAGAGATTAATATGTGAGGCAGATC 1029
Query 899 CAATGTTTGACGCAGAGAACTGCAAGCCCC-AAATCTCGTTCAGCGGATCAATCAAGTCT 957
| |||||||| ||||||||||||||||||| ||| |||| ||||||||||| ||||||||
Sbjct 1030 CGATGTTTGATGCAGAGAACTGCAAGCCCCGAAA-CTCGCTCAGCGGATCAGTCAAGTCT 1088
Query 958 ACACCAAGTCTGCGAGCAGATGATGAGAGTGTTTATAGGAGAGGTGATGGGAGTTATGTA 1017
||| |||||||||||| | |||||| |||||| ||||| ||| ||| |||||||||||
Sbjct 1089 ACATCAAGTCTGCGAGAACATGATGGGAGTGTCTATAGTAGACAAGATAGGAGTTATGTA 1148
Query 1018 AATGATCAAGACGAGTATGATGCTTTGTTTTCTGGTGTAGCCAGTGGAAGAACTCTTGTC 1077
|| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1149 AACGATCAAGACGAGTATGATGTTTTGTTTTCTGGTGTAGCCAGTGGAAGAACTCTTGTC 1208
Query 1078 TCAGGCTCTCCTCTGGTGACTTTCGGAGACAATAACCAAGAAACTGATGTTGTGATCGAG 1137
|||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||
Sbjct 1209 TCAGGCTCTCCTCTGGTGACTTTCGGAGACAATAACCAAGAAACTGGTTTTGTTATCGAG 1268
Query 1138 AGTCCAAGAATTGGAGATCAGATTCAATGTTCTGGTGTTGAAGATGACAAGATTGAGTCA 1197
|||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||||
Sbjct 1269 AGTCCAAGAATTGGAGATCAGATTCAATGTTCTGGTGTTGAAAATGGCAACATTGAGTCA 1328
Query 1198 GTTTGGTTCCATCAGCGGAACAGAAGCTCCGAGTTTAATGAATCTGTGTGCTCTAGGACC 1257
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 GTTTGGTTCCATCAGCGGAACAGAAGCTCCGAGTTTAATGAATCTGTGTGCTCTAGGACC 1388
Query 1258 AATCGCTCAAGAAGTTCAAGACGAAACACCAAGAAGAGACAATCAGGTGACATCTGTTCA 1317
|| |||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||
Sbjct 1389 AACCGCTCAAGAAGTTCAAGACGAAACACCAAGAAGAGACAATCAGGAGACATTTGTTCA 1448
Query 1318 AAACACCACAGGCATGGTTTCACACAGGATCCATTCACTGAGTTACTAGATAACAGACAG 1377
||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct 1449 AAACATCACAGGCATGGTTTCGCACAAGATCCATTCACTGAGTTACTAGATAACAGACAG 1508
Query 1378 CAGCTGCAACAGTACAGTGAAAGCTCATCATCATCATCAATATATGATACCTCTGGTACT 1437
||||||| |||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct 1509 CAGCTGCTACAGTACAGTGAAACCTCGTCATCATCATCAATATATGATACCTCTGGTACT 1568
Query 1438 ACTACTCCAACCAACACAACAGAAGATATCTGTGAGAAACCAAAGTCAGATTTGGATTCT 1497
|| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1569 ACAACTCCAACCAACACAACAGAAGATATCTGTGAGAAACCAAAAACAGATTTGGATTCT 1628
Query 1498 AAGGCCGAACTTAAGACAGGGGAGACTGAAATAGACCCACGTCATGG-ACGGAGCAAGCG 1556
||||| |||||||||||| |||||||||| |||||||||||| ||| |||||||||| |
Sbjct 1629 GAGGCCAAACTTAAGACAGTGGAGACTGAACTAGACCCACGTC-TGGGACGGAGCAAGGG 1687
Query 1557 TGTGTTAAAATTGGGATTGTGTGTCTTCTCTATTGCAGTTGCAGGGTTTGCTTCTTTCAT 1616
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1688 TGTGTTAAAATTGGGATTGAGTGTCTTCTCTATTGCAGTTGCAGGGTTTGCTTCTTTCAT 1747
Query 1617 GTGGATGCATCTCCAGGATGATATGATGCTTCCTCACCTTGTTCCGACTTAA 1668
||||||| ||||||||||||||||||||| |||||| |||||||||||||||
Sbjct 1748 GTGGATGTATCTCCAGGATGATATGATGCCTCCTCATCTTGTTCCGACTTAA 1799
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 82429294890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5