BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340580
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT3G23685.1 | Symbols: | F-box associated ubiquitination effec... 287 1e-76
AT3G04250.1 | Symbols: | F-box associated ubiquitination effec... 274 1e-72
AT2G38590.1 | Symbols: | F-box and associated interaction doma... 246 2e-64
AT3G23680.1 | Symbols: | F-box associated ubiquitination effec... 185 5e-46
AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol ... 178 8e-44
AT5G41510.1 | Symbols: | F-box and associated interaction doma... 139 4e-32
AT3G22421.1 | Symbols: | F-box and associated interaction doma... 135 5e-31
AT3G23420.1 | Symbols: | F-box and associated interaction doma... 52.8 5e-06
> AT3G23685.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8527239-8528317 FORWARD LENGTH=993
Length=993
Score = 287 bits (155), Expect = 1e-76
Identities = 298/364 (82%), Gaps = 22/364 (6%)
Strand=Plus/Plus
Query 294 AATT-TTATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGTCA 352
|||| || || |||| |||||||||||||||||||| ||| ||||| |||||||||||||
Sbjct 386 AATTCTTTTGGTATGGAATCTACGATTTTGACTCTGATTTATGGACTACTCTTGATGTCA 445
Query 353 CTCCACATTGGCGGATAGTACCGTTTGGTAACCGTAGCGTTTTC-CTTGAGGGAAACACT 411
|||| ||||||| | || || ||||| |||||||| ||| |||| ||| |||||| |||
Sbjct 446 CTCCGCATTGGC-G-TA-TAGCGTTTTGTAACCGTGGCG-TTTCTCTTAAGGGAAGCACG 501
Query 412 TACTATTGTGCTTCAGAAAGGAAC-TCAGAAGTGGACGGACA-CCATGGACACAAAGATC 469
|||| |||||| ||||||||||| | ||| || || || | | ||| | | ||||
Sbjct 502 TACTGGTGTGCTGCAGAAAGGAACGT-AGATGTCGA-TGA-AGTCTTGG-C-C---GATC 553
Query 470 ACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGTTTA 529
| ||||||||||||||| ||||| ||||||||||| |||||||| |||||||||||||
Sbjct 554 GCTTAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTCTGCCTCTGCCGTTTA 613
Query 530 GCGCCGGGTATGA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCT 588
| | ||| || | ||||| | |||| ||||||||||||||||||||||||||||||| |
Sbjct 614 GTGGTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTT 672
Query 589 TTACTT-ACGCATAACGAAGT-AAATCTATATGAGTTTGACATATGGATCACGACTAAGA 646
|||||| | ||| | ||| | ||||| ||||||| ||||| ||||||| ||||| ||||
Sbjct 673 TTACTTCA-GCACGATGAA-TCAAATCCATATGAGCTTGACTTATGGATTACGACCAAGA 730
Query 647 TTGA 650
||||
Sbjct 731 TTGA 734
> AT3G04250.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:1121950-1122828 FORWARD LENGTH=879
Length=879
Score = 274 bits (148), Expect = 1e-72
Identities = 381/485 (79%), Gaps = 49/485 (10%)
Strand=Plus/Plus
Query 296 TTTT-ATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGTCACT 354
|||| ||| ||||||||||||||| |||| | | ||| ||||| |||||||||||| ||
Sbjct 118 TTTTCATGGTATGAAATCTACGATATTGAAACCGATTTATGGACAACTCTTGATGTCCCT 177
Query 355 CCACATTGGCGGATAGTACCGT-TTGGTAACCGTAGCGT-TTTC-CTTGAGGGAAACACT 411
||| ||| |||||||| ||| || | | ||| | || |||| || ||||||| ||
Sbjct 178 CCATATT---GGATAGTATCGTGTT-ATCAGCGT-G-GTGTTTCTCTCAAGGGAAATACC 231
Query 412 TACTATTGTGCTTCAGAAAGGAACTCAGAAGTGGACGGACACCATGGACACAAAGATCAC 471
|||| ||||||| || |||| ||| | || | | ||| || | || ||||||
Sbjct 232 TACTTTTGTGCTACAAAAAGTAACGC--AA-T--A--AACAAAATCG--AC---GATCAC 279
Query 472 ATAATCTGTTTTGATTAT-ACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGTTTAG 530
|||||||||||||||| | |||| ||||||||||| || ||| | | ||| ||||||||
Sbjct 280 ATAATCTGTTTTGATT-TCACAAGTGAGAGATTTGGGCCACTTTTGCGTCTACCGTTTAG 338
Query 531 CGCCGGGTATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTT 590
||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 339 CGCTGGCCATGATGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTT 398
Query 591 ACTTACGCATAACGAA-GTAAATCTATATGAGTTTGACATATGGATCACGACTAAGATTG 649
||||||||| ||||| | || || |||||||||||| |||||||||||||||||||| |
Sbjct 399 ACTTACGCACAACGACTGGAA-TCCATATGAGTTTGAGATATGGATCACGACTAAGATCG 457
Query 650 A-TGCCGA-AAAGATATCGTGGAACAAGTTCTTG-ACAGTGGATTC-GCAACCA--G--- 700
| | || |||| | ||||||| |||| ||||| | | ||||| | | | ||| |
Sbjct 458 AGTAT-GATAAAG-TGTCGTGGAGCAAGATCTTGGAAA-TGGATACAGGA-CCATTGGCT 513
Query 701 -ACATTCCGA----ATATATG--TGGG-GTTTCTTCATTGATGAGGAGAAGAAAGTCATC 752
|||| |||| |||||| |||| ||||||||||||| ||||||||||||||| ||
Sbjct 514 GACATGCCGATTGCATATATACATGGGAGTTTCTTCATTGACGAGGAGAAGAAAGTC-TC 572
Query 753 -ATGG 756
||||
Sbjct 573 CATGG 577
> AT2G38590.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:16142897-16144184 FORWARD LENGTH=1288
Length=1288
Score = 246 bits (133), Expect = 2e-64
Identities = 376/487 (77%), Gaps = 42/487 (9%)
Strand=Plus/Plus
Query 292 CAA-ATTTTATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGT 350
||| ||||| || |||||||| ||||||||| |||||| || ||||| |||||||||||
Sbjct 562 CAATATTTT-TGGTATGAAATTTACGATTTTAACTCTGATTCATGGACAACTCTTGATGT 620
Query 351 CACTCCACATTGGCGGATAGTACCGTTTGGTAACCGTAGCGT-TTTC-CTTGAGGGAAAC 408
||||||||| ||| | ||| ||| | || || ||||| | || |||| || | ||||||
Sbjct 621 CACTCCACACTGGTGTATA-TACTG-TT-GTGACCGT-G-GTGTTTCTCTCAACGGAAAC 675
Query 409 ACTTACTATTGTGCTTCAGAAAGGAACTCAGAAGTGGACGGACACCATGGACACAAAGAT 468
||||||| |||||| ||||||||| ||||| ||| | | || | | |||
Sbjct 676 ACTTACTGGTGTGCTAAAGAAAGGAAAGCAGAA---GAC-G--A-TATTG--TC---GAT 723
Query 469 CACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGT-T 527
||||| || | |||||||| |||||| ||||||||||| |||||| | ||| |||||| |
Sbjct 724 CACATCATATCTTTTGATTTTACAAACGAGAGATTTGGGCCGCTTTTGCCTTTGCCGTCT 783
Query 528 TA-GCGCCGG-GTATG---ATG-ACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCT 581
| | || ||| ||| | | ||| |||||||||| ||||| ||||||||||||
Sbjct 784 AAGGTTATGGAACATGAATATGAAAT-TGTAACTTTATCTTATGTTAAAGAAGAGAAGCT 842
Query 582 TGCGGCTTTACTTAC-GCATAACGAAGTA-AATCTATATGAGTTTGACATATGGATCACG 639
||| |||||| || | |||| |||||| | | | | |||||||||| |||||||| |||
Sbjct 843 TGCAGCTTTA-TTTCAGCATTACGAAGCAGATTGGA-ATGAGTTTGATATATGGATTACG 900
Query 640 ACTAAGATTGATGCCGAAAAGATATCGTGGAACAAGTTCTTGACAGTGGATTCGCAACC- 698
|||||||||||||| ||| | | ||||||| || |||||||| | ||||| || |||
Sbjct 901 ACTAAGATTGATGCTGAAGTGGTGTCGTGGAGCATGTTCTTGAGAATGGATACGGGACCT 960
Query 699 A-G--ACA--TTCCGA-ATATATGTG-GGGTTTCTTCATTGATGAGGAGAAGAAAGTCAT 751
| | | | |||| | ||||||||| ||||||||||||||||||||||||||||||
Sbjct 961 AGGATAGAGGTTCC-ACATATATGTGAAGGTTTCTTCATTGATGAGGAGAAGAAAGTCGC 1019
Query 752 CATGGGT 758
|||||||
Sbjct 1020 CATGGGT 1026
> AT3G23680.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr3:8526366-8527173 REVERSE LENGTH=708
Length=708
Score = 185 bits (100), Expect = 5e-46
Identities = 182/221 (82%), Gaps = 8/221 (4%)
Strand=Plus/Plus
Query 473 TAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCGTTTAGCG 532
||||||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| |
Sbjct 173 TAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCTCTTCTGCCTCTGCCGTTTAGTG 232
Query 533 CCGGGTATGA-TGACTATGTGACTTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGCTTTA 591
||| || | ||||| | |||| ||||||||||||||||||||||||||||||| ||||
Sbjct 233 GTGGGCAT-ATTGACTGTATGACGTTATCTTGTGTTAGAGAAGAGAAGCTTGCGGTTTTA 291
Query 592 CTT-ACGCATAACGAAGT-AAATCTATATGAGTTTGACATATGGATCACGACTAAGATTG 649
||| | ||| | ||| | ||||| ||||||| ||||| ||| ||| ||||| |||||||
Sbjct 292 CTTCA-GCACGATGAA-TCAAATCCATATGAGCTTGACTTATCGATTACGACCAAGATTG 349
Query 650 ATGCC-GAAAAGATATCGTGGAACAAGTTCTTGACAGTGGA 689
| | | | | || | | ||||| ||||||||||| ||||||
Sbjct 350 A-GACTGGAGAGGTGTTGTGGAGCAAGTTCTTGAGAGTGGA 389
> AT1G65990.1 | Symbols: | type 2 peroxiredoxin-related / thiol
specific antioxidant / mal allergen family protein | chr1:24571603-24573471
REVERSE LENGTH=1662
Length=1662
Score = 178 bits (96), Expect = 8e-44
Identities = 172/208 (83%), Gaps = 7/208 (3%)
Strand=Plus/Plus
Query 13 AATCTTCCAAGGGATTTGATAGAGGAGATTGTCTCTAGAGTTCCTTTGAAGTATATGAGA 72
|||||||||| ||||||| ||||||| ||| |||||||||||||| ||| |||||||||
Sbjct 481 AATCTTCCAACGGATTTGTTAGAGGAAATTATCTCTAGAGTTCCTCGGAAATATATGAGA 540
Query 73 GCAGTGCGATTAACTTGCAAAACGTTGAACGCTTTATCCCAAAGTTC-GAGCTTTATGAA 131
|||||||||||||||||||||| || ||||| | | | | |||| | |||||||| |||
Sbjct 541 GCAGTGCGATTAACTTGCAAAAGGTGGAACGGTATGTTCAAAAGC-CAGAGCTTTACGAA 599
Query 132 GTTGCACATAGGTAAAGAAGCAGCAGCAATAAAGGAAGG--GG-AGACTCGAATGATCA- 187
| ||||||| || ||||||| |||||||| || |||| || ||||||| ||||| |
Sbjct 600 GATGCACATTGGCAAAGAAGAAGCAGCAACAAGGGAACTAAGGCAGACTCGGATGAT-AG 658
Query 188 TGTTGATGGATTGCAATCTTTATCTAAT 215
|| ||||||||| |||| ||||| ||||
Sbjct 659 TGATGATGGATTACAATGTTTATTTAAT 686
Score = 100 bits (54), Expect = 2e-20
Identities = 177/233 (76%), Gaps = 22/233 (9%)
Strand=Plus/Plus
Query 466 GATCACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACCTCTGCCG 525
||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 1159 GATCATATAATCTGTTTTGATTTTACAAGAGAGAGATTTGGACCGCTTCTACCTCTGCCA 1218
Query 526 TTTAGCGCC-GGGTATG-ATGACTATGTGACTTTATCTT-GTGTTAGAGAAGAGAAGCTT 582
||||| || ||| || | | | || | | |||||| | ||||||||||| || |
Sbjct 1219 TTTAGTGCTTGGGG-TGCAC-AGTTTGCGTCACTATCTTCG-GTTAGAGAAGATAAAATC 1275
Query 583 GCGGCTTTACTT-ACGCATAAC-GAAGTAAATCTATATGAGTTTGA-CATATGGATCACG 639
| |||||| || | | || | || | | | ||| || |||| | ||||||| |||
Sbjct 1276 ACTGCTTTATTTCA-GAATTGCCGA-GCA--T--ATA--AGCTTGAGC-TATGGATTACG 1326
Query 640 ACTAAGATTGATGCCGAA-AA-GATATCGTGGAACAAGTTCTTGACAGTGGAT 690
||||||||||||| | || || | | |||||| ||| ||||| ||| |||||
Sbjct 1327 ACTAAGATTGATGTC-AACAATGCGA-CGTGGAGCAAATTCTTCACAATGGAT 1377
> AT5G41510.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr5:16607124-16608326 FORWARD LENGTH=1203
Length=1203
Score = 139 bits (75), Expect = 4e-32
Identities = 134/161 (83%), Gaps = 9/161 (6%)
Strand=Plus/Plus
Query 13 AATCTTCCAAGGGATTTGATAGAGGAGATTGTCTCTAGAGTTCCTTTGA-AGTATATGAG 71
|||||||||||||||||||||||||||||| | ||||| ||||| |||| | | |||||
Sbjct 19 AATCTTCCAAGGGATTTGATAGAGGAGATTTTTTCTAGGGTTCCCTTGACA-TCTATGAA 77
Query 72 AGCAGTGCGATTAACTTGCAAAACGTTG-AACGCTTTATCCCAAAGTTCGAGCTTTATGA 130
||||||| ||||||||||||||| |||| ||| |||||| ||||| |||||||| ||
Sbjct 78 AGCAGTGAGATTAACTTGCAAAA-GTTGGAACAATTTATCTAAAAGTGAGAGCTTTACGA 136
Query 131 AGTTGCACATAGGTAAAGAAGCAGCAGCAATA-AAG-GAAG 169
|| ||||||| |||| || |||||| ||| | ||| ||||
Sbjct 137 AGGTGCACATTGGTA--GA-GCAGCAACAAGAGAAGAGAAG 174
> AT3G22421.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7949116-7950396 REVERSE LENGTH=1281
Length=1281
Score = 135 bits (73), Expect = 5e-31
Identities = 308/414 (74%), Gaps = 45/414 (11%)
Strand=Plus/Plus
Query 296 TTTTATGTTATGAAATCTACGATTTTGACTCTGTTTTGTGGACGACTCTTGATGTCACTC 355
|||| || ||||||||||||||||||||||||| |||||||||||||||||| || ||||
Sbjct 531 TTTT-TGGTATGAAATCTACGATTTTGACTCTGATTTGTGGACGACTCTTGACGTTACTC 589
Query 356 CACATTGGCGGAT--A-----GT-ACCGT--TTG--GTAACCGTAGCGT-TTTC-CTTGA 401
|||| ||| || | | |||| ||| ||||||| | || || | || |
Sbjct 590 CACAATGGTTTATAAATTTCCCTCCCCGTGGTTGTTATAACCGT-G-GTGTTACTCTCAA 647
Query 402 GGGAAACACTTACTATTGTGCT-TCAGAAAGGAACTCAGA-AGTGGA-CGGACACCATGG 458
|||||||||||||| |||||| | || |||||| ||| | | | | || | |
Sbjct 648 GGGAAACACTTACTGGTGTGCTATAAG-AAGGAAGTCAAACACT-AATTGG--TTTGTTG 703
Query 459 ACACAAAGATCACATAATCTGTTTTGATTATACAAAAGAGAGATTTGGACCGCTTCTACC 518
| | |||||||||||||||||||||| ||||| ||||||||||| |||||| | ||
Sbjct 704 A-TC-TTGATCACATAATCTGTTTTGATTTTACAAGTGAGAGATTTGGTCCGCTTATGCC 761
Query 519 TCTGCCG--T-TTAGCGCCGGGT-ATGATGACTATGTGACTTTATCTTGTGTTAGAGAAG 574
| ||||| | |||| || || | || ||||||| ||||||||||||||||||
Sbjct 762 TTTGCCGTTTGTTAGATATACGTCCGGAAGCCT-TGTGACTCTATCTTGTGTTAGAGAAG 820
Query 575 AGAAGCTTGCGGCTTTACTTACGCATAACGAAGTAAATCTATATGAGTTTGACATATGGA 634
|||||||||||| ||| || | |||| || | ||| || || || ||||||
Sbjct 821 AGAAGCTTGCGGTTTTGTTTT-G--TAAC-AA-TG---CTAC-TG--TT-GAGGTATGGA 868
Query 635 TCACGACTAAGATTGATGCC-GAAAAGATATCGTGGAACAAGTTCTTGACAGTG 687
| |||||||||||||| | | || ||||| ||||||| ||||||||||||||||
Sbjct 869 TTACGACTAAGATTGA-GACTGACAAGATTTCGTGGAGCAAGTTCTTGACAGTG 921
> AT3G23420.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8386273-8387324 REVERSE LENGTH=858
Length=858
Score = 52.8 bits (28), Expect = 5e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 721 GTTTCTTCATTGATGAGGAGAAGAAAGT 748
||||||||||||||||||||||||||||
Sbjct 794 GTTTCTTCATTGATGAGGAGAAGAAAGT 821
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5