BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340616
Length=1272
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04660.1 | Symbols: | F-box and associated interaction doma... 1657 0.0
AT2G13630.1 | Symbols: | F-box associated ubiquitination effec... 758 0.0
> AT3G04660.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:1264726-1265966 FORWARD LENGTH=1241
Length=1241
Score = 1657 bits (897), Expect = 0.0
Identities = 1077/1166 (92%), Gaps = 4/1166 (0%)
Strand=Plus/Plus
Query 1 ATGAAGAAAAGGGGAAGGAAGTCTAAGAAGCCAGAAGAAAAAAGAGATGAATACGACCCG 60
||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||
Sbjct 69 ATGAAGAAAAGGGGAAGGAAGTCTAAGAAACCAGAAGAAAAAAGAGCTGAATACGACCCG 128
Query 61 TGTTCGATTCTTCCTCTGGAACTGAAAACAGAGATTCTCTTGAAACT-GCTGCCGAAATC 119
||||||||||||||||||||||||||| |||||||||| || || | | |||||||||
Sbjct 129 AGTTCGATTCTTCCTCTGGAACTGAAAATAGAGATTCTCATG-AAGTCACCGCCGAAATC 187
Query 120 CATAGCCAGGCTAGGTTTCGTTTCAAATCACTGGTCATCAATAATCCGCGGCCAAGATTT 179
|||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| |||
Sbjct 188 CATAGCCAAGCTAGGTTTCGTTTCAAATCATTGGTCATCGATAATCCGCGGCCAAGTTTT 247
Query 180 CACCAACTTGTACATGAGTCGATCTTTGGCTCAGCCGCGTCTTCTTTTCTCAGTCTACCG 239
|||| ||||||||||||| |||||||||||||| || || |||||||||||||| |||||
Sbjct 248 CACCGACTTGTACATGAGACGATCTTTGGCTCATCCACGACTTCTTTTCTCAGTGTACCG 307
Query 240 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCA 299
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 308 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAAGATCCGTCTTCTGATCA 367
Query 300 TCGTAGGGTCAGTTATACTCTTAGCTCGGATCTACGTTACTGGTTTTCTCCACCCATGGG 359
|||||| |||||||| ||||| | || |||||||| |||| |||||||||||||| ||
Sbjct 368 TCGTAGCGTCAGTTACACTCTGAATTCAGATCTACGGTACTCATTTTCTCCACCCATCGG 427
Query 360 CGGTTTGATCTTTGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCA 419
||||||||| || |||| ||| ||||||||| || |||||||||||||||||||||||
Sbjct 428 CGGTTTGATATTCGGTCAAAACAATACTAAAGCTATGATTGGAAACCCTAGTACGGGTCA 487
Query 420 ATTCGTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATA 479
|| ||| ||||||||||| ||||||||||||||||| |||| |||||||||||||||||
Sbjct 488 GTTTGTACCTTTACCTAGAATCAAAACGCAGAGAAAGCACATTTTCTCCATTTTTGGATA 547
Query 480 TGATCCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATC 539
||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| |
Sbjct 548 TGATCCAGTTAATGATTTGTACAAAGTCTTGTGTATGACGGTAAGAACTCTACGTGGACC 607
Query 540 ACAAGCTTTTAAG-TGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAG 598
||| |||| || |||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 608 ACATTATTTT-AGATGGGAAGATCCTATGTGGGAGGAGCCTATGACAGAGGAGCATCAAG 666
Query 599 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTATCTACATCGTC 658
|||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct 667 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTAAGTATCTACATCGTC 726
Query 659 ATCATTCTGGATCTCAAGGGATATGTAGGGATGGGGTGTTGTATTATTTAGCTTCTTTCA 718
|||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||
Sbjct 727 ATCATTCTGGATCTCAAGGGATATGTAGAGATGGGGTGATGTATTATTTAGCTTCTTTCA 786
Query 719 AGGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGC 778
| |||||| |||||||||||| ||||||||||||||||||||| ||||||||| ||||||
Sbjct 787 ACGATAAACGATCTCTGATGAGCTTTGATCTGAGCTCTGAAGAATTTAATGTTACTAAGC 846
Query 779 TACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAG 838
||||||||||||||| |||||||||||||||| || ||||| || |||||||||||||||
Sbjct 847 TACCTGAGGATTATATATTACAACAGTTTGGTAATATGGTGGACCATAGTGGAAAGATAG 906
Query 839 CTATAGTGACTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGCA 898
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 907 CTATAGTGAGTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGTCAGCA 966
Query 899 AAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATTACAGATATAGTTGGGAATG 958
|||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||
Sbjct 967 AAGAAGAGTGGTCAAAAGTTGCTGCCATAGTTCCTTCTATTACAGATATAGTTGGGAATG 1026
Query 959 ATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGCTCC 1018
|||||| |||||| ||||| ||||||||| |||||||||||||||||||| |||||||||
Sbjct 1027 ATCAAAGAGTCATTTTCAGGGGTATACTTTCTACTGGTGAGATTATACTTTCACTGCTCC 1086
Query 1019 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGaaaaaaaTGCTAGAA 1078
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1087 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGAAAAAACTGCTAGAA 1146
Query 1079 AAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCGGTCAATGTCTTTTTCGATCATG 1138
||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| |
Sbjct 1147 AAGTTGTGATTCAAGGAATTGGAGAAGACTATGCTGCTATTAATGTCTTTTTCGATCACG 1206
Query 1139 TAGAGAGTCATATGGTTCTGTCCAAG 1164
|||||||||||||||||||||| |||
Sbjct 1207 TAGAGAGTCATATGGTTCTGTCGAAG 1232
> AT2G13630.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:5684538-5685431 REVERSE LENGTH=894
Length=894
Score = 758 bits (410), Expect = 0.0
Identities = 769/933 (82%), Gaps = 61/933 (7%)
Strand=Plus/Plus
Query 247 ATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCATCGTAGG 306
|||||||||||| ||||||||||||||||||||||||||||||||| | |||||||||
Sbjct 1 ATGCAGATGCAGCTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTTTAATCATCGTA-- 58
Query 307 GTCAGTTATACTCTTAGCTCGGATCTACGTTA-CTGGTTTTCTCCACCCAT-GGGCGGTT 364
| | | | | | ||||||||| | || || ||||||||||||| | | | ||||
Sbjct 59 CT-A-TGA-A----T---TCGGATCTAGGGTACCT-GTTTTCTCCACCCGTCGAG-GGTT 106
Query 365 TGATCTT-TGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCAATTC 423
||||||| | || |||| ||||||||| || |||||||| |||||||||||||| ||
Sbjct 107 TGATCTTCT-GTAGAAATAATACTAAAGCAATGATTGGAAATCCTAGTACGGGTCAGTTT 165
Query 424 GTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATATGAT 483
||||||||| || | | | | ||||||| ||||||| || ||||||||||||||
Sbjct 166 GTATCTTTA-CT--A--C--GA-G--GAGAAAGAACATATTATCTGTTTTTGGATATGAT 215
Query 484 CCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATCA-CA 542
||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||| ||
Sbjct 216 CCAGTTAATGATTTGTACAAAGTGTTGTGCAAGAC-G--ACAACTAAACGTGGATCACCA 272
Query 543 AGCTTTTAAGTGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAGTTTT 602
| |||||| ||||||| |||||||||||||||| |||||||||||||||||||||||||
Sbjct 273 CGTTTTTAATTGGGAAGGTCCTATGTGGGAGGAGTCTATGTCAGAGGAGCATCAAGTTTT 332
Query 603 CACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTAT-CTACATCGTCATC 661
||| |||||| | ||||||||||||||||||||||||||| | ||| || |||||||||
Sbjct 333 CACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAGTATACT-CATCGTCATT 391
Query 662 ATTCTGGATCTCAAGGGATATG-TAGGGATGGGG-TGTTGTATTATTTAGCTTCTTTCAA 719
|| || |||||||||||||||| | || |||||| || ||||||||||||||||||||||
Sbjct 392 ATCCTAGATCTCAAGGGATATGCT-GGAATGGGGTTG-TGTATTATTTAGCTTCTTTCAA 449
Query 720 GGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGCT 779
|||||| ||||| | |||| ||| |||||||| |||||||||||||||||| ||||||
Sbjct 450 CGATAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGACTTTAATGTTATTAAGCT 509
Query 780 ACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAGC 839
|| | || || ||| | ||||| ||| |||| | |||||| || | | |||||||||| |
Sbjct 510 ACTTAAGAATCATAAACTACAAGAGTATGGTAAATTGGTGGACCACACTGGAAAGATAAC 569
Query 840 TATAGTGACTCAGGC-A-TACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGC 897
|||| || ||| || | || | |||| | | |||||||||||||| |||||||||| |
Sbjct 570 TATAATGTGTCATGCAAGTA-A-TGGTCTACTTGACCTGTGGGTTCTGGAAGATGCCAAC 627
Query 898 AAAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATT-ACAGATATAGTTGGGAA 956
|||| ||| ||||||| || ||||||||| |||||||||||| | |||| ||||||| ||
Sbjct 628 AAAGGAGAATGGTCAACAGCTGCTGCCGTGATTCCTTCTATTGA-AGATTTAGTTGGCAA 686
Query 957 T-GATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGC 1015
| | | || | | | ||||||||||||||| || ||||||||||||||||| || ||
Sbjct 687 TCG-T-GAACA-T-GTGTTCAGTGGTATACTTGGTATTGGTGAGATTATACTTGTACCGC 742
Query 1016 TCCCAACC-CCCAAGCCGCCCTTCTTTTTT-CTCTGTTACGATCCCAAGGaaaaaaaTGC 1073
| || ||| || || | | || |||||| |||||||||||||| ||||||||||||||
Sbjct 743 T-CCTACCTCCTAA--C-ACGTT-TTTTTTCCTCTGTTACGATCCTAAGGAAAAAAATGC 797
Query 1074 TAGAAAAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCG-GTCAATGTCTTTTTCG 1132
||||||||||||||||||| | |||||||||| || ||| | |||| ||||||||||
Sbjct 798 TAGAAAAGTTGTGATTGAAAGTATTGGAGAAG-CT--GCT-CATGTCAGGGTCTTTTTCG 853
Query 1133 ATCATGTAGAGAGTCATATGGTTCTGTCCAAGG 1165
|| ||||||||||||||||||||||| | ||||
Sbjct 854 ATTATGTAGAGAGTCATATGGTTCTGACAAAGG 886
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62549879070
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5