BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg340616 Length=1272 Score E Sequences producing significant alignments: (Bits) Value AT3G04660.1 | Symbols: | F-box and associated interaction doma... 1657 0.0 AT2G13630.1 | Symbols: | F-box associated ubiquitination effec... 758 0.0 > AT3G04660.1 | Symbols: | F-box and associated interaction domains-containing protein | chr3:1264726-1265966 FORWARD LENGTH=1241 Length=1241 Score = 1657 bits (897), Expect = 0.0 Identities = 1077/1166 (92%), Gaps = 4/1166 (0%) Strand=Plus/Plus Query 1 ATGAAGAAAAGGGGAAGGAAGTCTAAGAAGCCAGAAGAAAAAAGAGATGAATACGACCCG 60 ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| Sbjct 69 ATGAAGAAAAGGGGAAGGAAGTCTAAGAAACCAGAAGAAAAAAGAGCTGAATACGACCCG 128 Query 61 TGTTCGATTCTTCCTCTGGAACTGAAAACAGAGATTCTCTTGAAACT-GCTGCCGAAATC 119 ||||||||||||||||||||||||||| |||||||||| || || | | ||||||||| Sbjct 129 AGTTCGATTCTTCCTCTGGAACTGAAAATAGAGATTCTCATG-AAGTCACCGCCGAAATC 187 Query 120 CATAGCCAGGCTAGGTTTCGTTTCAAATCACTGGTCATCAATAATCCGCGGCCAAGATTT 179 |||||||| ||||||||||||||||||||| |||||||| |||||||||||||||| ||| Sbjct 188 CATAGCCAAGCTAGGTTTCGTTTCAAATCATTGGTCATCGATAATCCGCGGCCAAGTTTT 247 Query 180 CACCAACTTGTACATGAGTCGATCTTTGGCTCAGCCGCGTCTTCTTTTCTCAGTCTACCG 239 |||| ||||||||||||| |||||||||||||| || || |||||||||||||| ||||| Sbjct 248 CACCGACTTGTACATGAGACGATCTTTGGCTCATCCACGACTTCTTTTCTCAGTGTACCG 307 Query 240 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCA 299 |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 308 TCCCAACATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAAGATCCGTCTTCTGATCA 367 Query 300 TCGTAGGGTCAGTTATACTCTTAGCTCGGATCTACGTTACTGGTTTTCTCCACCCATGGG 359 |||||| |||||||| ||||| | || |||||||| |||| |||||||||||||| || Sbjct 368 TCGTAGCGTCAGTTACACTCTGAATTCAGATCTACGGTACTCATTTTCTCCACCCATCGG 427 Query 360 CGGTTTGATCTTTGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCA 419 ||||||||| || |||| ||| ||||||||| || ||||||||||||||||||||||| Sbjct 428 CGGTTTGATATTCGGTCAAAACAATACTAAAGCTATGATTGGAAACCCTAGTACGGGTCA 487 Query 420 ATTCGTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATA 479 || ||| ||||||||||| ||||||||||||||||| |||| ||||||||||||||||| Sbjct 488 GTTTGTACCTTTACCTAGAATCAAAACGCAGAGAAAGCACATTTTCTCCATTTTTGGATA 547 Query 480 TGATCCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATC 539 ||||||||||||||||||||| ||||| ||||| |||||||||| |||| ||||||| | Sbjct 548 TGATCCAGTTAATGATTTGTACAAAGTCTTGTGTATGACGGTAAGAACTCTACGTGGACC 607 Query 540 ACAAGCTTTTAAG-TGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAG 598 ||| |||| || |||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 608 ACATTATTTT-AGATGGGAAGATCCTATGTGGGAGGAGCCTATGACAGAGGAGCATCAAG 666 Query 599 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTATCTACATCGTC 658 |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||| Sbjct 667 TTTTCACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTAAGTATCTACATCGTC 726 Query 659 ATCATTCTGGATCTCAAGGGATATGTAGGGATGGGGTGTTGTATTATTTAGCTTCTTTCA 718 |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||| Sbjct 727 ATCATTCTGGATCTCAAGGGATATGTAGAGATGGGGTGATGTATTATTTAGCTTCTTTCA 786 Query 719 AGGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGC 778 | |||||| |||||||||||| ||||||||||||||||||||| ||||||||| |||||| Sbjct 787 ACGATAAACGATCTCTGATGAGCTTTGATCTGAGCTCTGAAGAATTTAATGTTACTAAGC 846 Query 779 TACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAG 838 ||||||||||||||| |||||||||||||||| || ||||| || ||||||||||||||| Sbjct 847 TACCTGAGGATTATATATTACAACAGTTTGGTAATATGGTGGACCATAGTGGAAAGATAG 906 Query 839 CTATAGTGACTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGCA 898 ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 907 CTATAGTGAGTCAGGCATACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGTCAGCA 966 Query 899 AAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATTACAGATATAGTTGGGAATG 958 |||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| Sbjct 967 AAGAAGAGTGGTCAAAAGTTGCTGCCATAGTTCCTTCTATTACAGATATAGTTGGGAATG 1026 Query 959 ATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGCTCC 1018 |||||| |||||| ||||| ||||||||| |||||||||||||||||||| ||||||||| Sbjct 1027 ATCAAAGAGTCATTTTCAGGGGTATACTTTCTACTGGTGAGATTATACTTTCACTGCTCC 1086 Query 1019 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGaaaaaaaTGCTAGAA 1078 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 1087 CAACCCCCAAGCCGCCCTTCTTTTTTCTCTGTTACGATCCCAAGGAAAAAACTGCTAGAA 1146 Query 1079 AAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCGGTCAATGTCTTTTTCGATCATG 1138 ||||||||||| |||||||||||||||||| |||||| | ||||||||||||||||| | Sbjct 1147 AAGTTGTGATTCAAGGAATTGGAGAAGACTATGCTGCTATTAATGTCTTTTTCGATCACG 1206 Query 1139 TAGAGAGTCATATGGTTCTGTCCAAG 1164 |||||||||||||||||||||| ||| Sbjct 1207 TAGAGAGTCATATGGTTCTGTCGAAG 1232 > AT2G13630.1 | Symbols: | F-box associated ubiquitination effector family protein | chr2:5684538-5685431 REVERSE LENGTH=894 Length=894 Score = 758 bits (410), Expect = 0.0 Identities = 769/933 (82%), Gaps = 61/933 (7%) Strand=Plus/Plus Query 247 ATGCAGATGCAGTTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTCTGATCATCGTAGG 306 |||||||||||| ||||||||||||||||||||||||||||||||| | ||||||||| Sbjct 1 ATGCAGATGCAGCTCTTTCACTCCTGCTCTCAGGAGGATCCGTCTTTTAATCATCGTA-- 58 Query 307 GTCAGTTATACTCTTAGCTCGGATCTACGTTA-CTGGTTTTCTCCACCCAT-GGGCGGTT 364 | | | | | | ||||||||| | || || ||||||||||||| | | | |||| Sbjct 59 CT-A-TGA-A----T---TCGGATCTAGGGTACCT-GTTTTCTCCACCCGTCGAG-GGTT 106 Query 365 TGATCTT-TGGTCGAAAGGGTACTAAAGCCATTATTGGAAACCCTAGTACGGGTCAATTC 423 ||||||| | || |||| ||||||||| || |||||||| |||||||||||||| || Sbjct 107 TGATCTTCT-GTAGAAATAATACTAAAGCAATGATTGGAAATCCTAGTACGGGTCAGTTT 165 Query 424 GTATCTTTACCTAGAGTCAAAACGCAGAGAAAGGACATATTCTCCATTTTTGGATATGAT 483 ||||||||| || | | | | ||||||| ||||||| || |||||||||||||| Sbjct 166 GTATCTTTA-CT--A--C--GA-G--GAGAAAGAACATATTATCTGTTTTTGGATATGAT 215 Query 484 CCAGTTAATGATTTGTATAAAGTGTTGTGCATGACGGTAATAACTAAACGTGGATCA-CA 542 ||||||||||||||||| ||||||||||||| ||| | | |||||||||||||||| || Sbjct 216 CCAGTTAATGATTTGTACAAAGTGTTGTGCAAGAC-G--ACAACTAAACGTGGATCACCA 272 Query 543 AGCTTTTAAGTGGGAAGATCCTATGTGGGAGGAGCCTATGTCAGAGGAGCATCAAGTTTT 602 | |||||| ||||||| |||||||||||||||| ||||||||||||||||||||||||| Sbjct 273 CGTTTTTAATTGGGAAGGTCCTATGTGGGAGGAGTCTATGTCAGAGGAGCATCAAGTTTT 332 Query 603 CACGCTAGGACCCAAACAAAAATGGAGAATGCTCGAATGTCACTAT-CTACATCGTCATC 661 ||| |||||| | ||||||||||||||||||||||||||| | ||| || ||||||||| Sbjct 333 CACTCTAGGAGCAAAACAAAAATGGAGAATGCTCGAATGTAAGTATACT-CATCGTCATT 391 Query 662 ATTCTGGATCTCAAGGGATATG-TAGGGATGGGG-TGTTGTATTATTTAGCTTCTTTCAA 719 || || |||||||||||||||| | || |||||| || |||||||||||||||||||||| Sbjct 392 ATCCTAGATCTCAAGGGATATGCT-GGAATGGGGTTG-TGTATTATTTAGCTTCTTTCAA 449 Query 720 GGATAAAAGATCTCTGATGACCTTTGATCTGAGCTCTGAAGACTTTAATGTTGCTAAGCT 779 |||||| ||||| | |||| ||| |||||||| |||||||||||||||||| |||||| Sbjct 450 CGATAAACGATCTTTAATGAGCTTCGATCTGAGATCTGAAGACTTTAATGTTATTAAGCT 509 Query 780 ACCTGAGGATTATACATTACAACAGTTTGGTTATTTGGTGAACTATAGTGGAAAGATAGC 839 || | || || ||| | ||||| ||| |||| | |||||| || | | |||||||||| | Sbjct 510 ACTTAAGAATCATAAACTACAAGAGTATGGTAAATTGGTGGACCACACTGGAAAGATAAC 569 Query 840 TATAGTGACTCAGGC-A-TACAGCGGTCCAATGGACCTGTGGGTTCTTGAAGATGCCAGC 897 |||| || ||| || | || | |||| | | |||||||||||||| |||||||||| | Sbjct 570 TATAATGTGTCATGCAAGTA-A-TGGTCTACTTGACCTGTGGGTTCTGGAAGATGCCAAC 627 Query 898 AAAGAAGAGTGGTCAAAAGTTGCTGCCGTAATTCCTTCTATT-ACAGATATAGTTGGGAA 956 |||| ||| ||||||| || ||||||||| |||||||||||| | |||| ||||||| || Sbjct 628 AAAGGAGAATGGTCAACAGCTGCTGCCGTGATTCCTTCTATTGA-AGATTTAGTTGGCAA 686 Query 957 T-GATCAAATAGTCATATTCAGTGGTATACTTCCTACTGGTGAGATTATACTTGCACTGC 1015 | | | || | | | ||||||||||||||| || ||||||||||||||||| || || Sbjct 687 TCG-T-GAACA-T-GTGTTCAGTGGTATACTTGGTATTGGTGAGATTATACTTGTACCGC 742 Query 1016 TCCCAACC-CCCAAGCCGCCCTTCTTTTTT-CTCTGTTACGATCCCAAGGaaaaaaaTGC 1073 | || ||| || || | | || |||||| |||||||||||||| |||||||||||||| Sbjct 743 T-CCTACCTCCTAA--C-ACGTT-TTTTTTCCTCTGTTACGATCCTAAGGAAAAAAATGC 797 Query 1074 TAGAAAAGTTGTGATTGAAGGAATTGGAGAAGACTCTGCTGCG-GTCAATGTCTTTTTCG 1132 ||||||||||||||||||| | |||||||||| || ||| | |||| |||||||||| Sbjct 798 TAGAAAAGTTGTGATTGAAAGTATTGGAGAAG-CT--GCT-CATGTCAGGGTCTTTTTCG 853 Query 1133 ATCATGTAGAGAGTCATATGGTTCTGTCCAAGG 1165 || ||||||||||||||||||||||| | |||| Sbjct 854 ATTATGTAGAGAGTCATATGGTTCTGACAAAGG 886 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 62549879070 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5