BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340627
Length=426
Score E
Sequences producing significant alignments: (Bits) Value
AT3G04717.1 | Symbols: | Encodes a Wound-induced protein (WIP)... 241 5e-63
> AT3G04717.1 | Symbols: | Encodes a Wound-induced protein (WIP)
family protein | chr3:1284851-1285293 REVERSE LENGTH=243
Length=243
Score = 241 bits (130), Expect = 5e-63
Identities = 152/163 (93%), Gaps = 0/163 (0%)
Strand=Plus/Plus
Query 262 GTGACGAATACTGCGACCGGAACGCAAGCCACAGTGAGAATCGTGGATCAGTGTAGTAAC 321
||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||
Sbjct 79 GTGACGAATACTGCGACCGGAACGCAAGCGACTGTGAGAATCGTGGATCAGTGTAGTAAC 138
Query 322 GGGGGTTTGGATTTAGACGAAGGTGTTTTCAGACAGCTTGATACTAACGGTCAGGGAAAC 381
|| |||||||| ||||| || ||||||||||||||||||||||||||| |||||||||||
Sbjct 139 GGTGGTTTGGACTTAGAGGAGGGTGTTTTCAGACAGCTTGATACTAACAGTCAGGGAAAC 198
Query 382 GCCCGTGGGCACTTGATTGTCAACTACGAGTTTGTCAACTGCT 424
|| ||||| ||||| || |||||||||||||||||||||||||
Sbjct 199 GCTCGTGGTCACTTAATAGTCAACTACGAGTTTGTCAACTGCT 241
Score = 143 bits (77), Expect = 1e-33
Identities = 79/80 (99%), Gaps = 0/80 (0%)
Strand=Plus/Plus
Query 1 ATGTCAAGACTTAGCTTATGTGTGTTTGTGTTGCTATGTGCGTTTGCGGCCAAAGCAGCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGTCAAGACTTAGCTTATGTGTGTTTGTGTTGCTATGTGCGTTTGCGGCCAAAGCAGCC 60
Query 61 GCTCAGTCCGCACCTAACGT 80
||||| ||||||||||||||
Sbjct 61 GCTCAATCCGCACCTAACGT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20207635098
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5