BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg340662

Length=684
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G04990.1 | Symbols:  | BEST Arabidopsis thaliana protein mat...   701    0.0  


> AT3G04990.1 | Symbols:  | BEST Arabidopsis thaliana protein match 
is: Frigida-like protein (TAIR:AT5G27220.1); Has 30900 
Blast hits to 17560 proteins in 1427 species: Archae - 757; 
Bacteria - 4112; Metazoa - 14311; Fungi - 2221; Plants - 1348; 
Viruses - 71; Other Eukaryotes - 8080 (source: NCBI BLink). 
| chr3:1383996-1384679 REVERSE LENGTH=684
Length=684

 Score =  701 bits (379),  Expect = 0.0
 Identities = 471/515 (91%), Gaps = 8/515 (2%)
 Strand=Plus/Plus

Query  11   TTGAGCAAAAGAGTCAAACTTTTGAAGCAGA-AAAGTCTGAAGCTGGTGATTTGAAGAAA  69
            ||||||||||||||||  ||||||||||||| ||| ||||||| ||||||||||||||||
Sbjct  158  TTGAGCAAAAGAGTCATGCTTTTGAAGCAGAGAAA-TCTGAAGTTGGTGATTTGAAGAAA  216

Query  70   TTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAGGCTC  129
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| 
Sbjct  217  TTGGTGGAAGAGTGTACTGAAGAACTGAGGTCAAAGAGGAATCTACTGACTGTGAAGCTG  276

Query  130  GATTCTTTGACAAGGGTTCAGAGAGAGCTTGAGTCAAAGGATAACCAATTGGGACAGGTT  189
            ||||| |||| ||||||||||||||||||||||| ||||||||||||||||| |||||||
Sbjct  277  GATTCGTTGATAAGGGTTCAGAGAGAGCTTGAGTTAAAGGATAACCAATTGGTACAGGTT  336

Query  190  ATGGCCGAGATTAAGAGGCGTTGCACTGAGGCTCGTAATGTTCAAGAGCGTAAGAGAGAA  249
            ||||| ||| |||||||||||| || |||||||||| |||||||| ||||||||||||||
Sbjct  337  ATGGCTGAGCTTAAGAGGCGTTACAGTGAGGCTCGTCATGTTCAAAAGCGTAAGAGAGAA  396

Query  250  GTGGAAGATGAAACAGCTTCAAAGAAGAAAGAGTTGTC-ACTGATTGTTGAGCAGAT-CG  307
             ||||||||||||||||| |||| |||||||||||||| | ||| |||||| ||||| | 
Sbjct  397  ATGGAAGATGAAACAGCTACAAAAAAGAAAGAGTTGTCTA-TGACTGTTGACCAGATTC-  454

Query  308  AAGAATCTGACAAACAGCTTGAGAACAAGTCTCGAGAAGTAGAATTGAAGGAGAAGGACA  367
            ||||||||| ||||||||||||||| |||||||| || ||||| |||||||| || || |
Sbjct  455  AAGAATCTGGCAAACAGCTTGAGAAGAAGTCTCGGGAGGTAGAGTTGAAGGATAAAGAGA  514

Query  368  TTGAAGAGAACAG-AAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGG  426
            |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  515  TTGAAGAGAA-AGGAAAAGAACTTGATTTGGTTAAGAGTCAAGTCAAAGCATGGGAAAGG  573

Query  427  AAACTCATTCAGCTTAGGAAATTGGTTGATGATGATTGTGCAAGAGAACTAAGTCCAAGG  486
            |||||||||||||| || ||||||||||||||||||||| | | |||||||||||| |||
Sbjct  574  AAACTCATTCAGCTGAGTAAATTGGTTGATGATGATTGTACTACAGAACTAAGTCCGAGG  633

Query  487  AAAGATCATGTGGATTCATCGAACAACACTCATGT  521
            |||||||| ||||||||||||||||||||| ||||
Sbjct  634  AAAGATCAAGTGGATTCATCGAACAACACTTATGT  668



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 33104302873


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5