BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340666
Length=2433
Score E
Sequences producing significant alignments: (Bits) Value
AT4G08630.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1404 0.0
AT4G08645.1 | Symbols: | pseudogene, hypothetical protein | ch... 132 2e-29
> AT4G08630.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G48860.2);
Has 1487 Blast hits to 747 proteins in 184 species: Archae
- 0; Bacteria - 56; Metazoa - 305; Fungi - 197; Plants - 180;
Viruses - 3; Other Eukaryotes - 746 (source: NCBI BLink).
| chr4:5506998-5511959 REVERSE LENGTH=2538
Length=2538
Score = 1404 bits (760), Expect = 0.0
Identities = 868/920 (94%), Gaps = 7/920 (1%)
Strand=Plus/Plus
Query 1 ATGAGAAACACGAGACCTGTTCATGTTAGGAATAAGAGTACGGAACCAGGAACACCCTCT 60
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1 ATGAGAAACACGAGACCTATTCATGTTAGGAATAAGAGTACGGAACCAGGAACACCATCT 60
Query 61 TCGCCTATGATGACGTCTCCTCTAATGCATCGGCATACACGTTCAGGATCAAATGCTGGC 120
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 61 TCGCCTATGATGACGTCTCCTCTAATGCATCGTCATACACGTTCAGGATCAAATGCTGGG 120
Query 121 CCAGCTTCCAATGCTAAGAGAGCTCAGACAAAAGCAGCTGCTCAGAGACTTGCGGCTGTG 180
|||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCAGCTTCGAATGCTAAGAAAGCTCAGACAAAAGCAGCTGCTCAGAGACTTGCGGCTGTG 180
Query 181 ATGTCAAATCAAACAGGAGACGAAGAAGATAGTGATGAAGACCTTTCCTTTGACTATAAT 240
||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct 181 ATGTCAAATCAAACAGGGGACGAGGAAGATAGTGATGAAGACCTTTCCTTTGACTATAAT 240
Query 241 GCT-TCAGGTACAGGGAGCATTGGACTCGCTTCCGGAAGATCTCATCCTTCTCGCTCGCC 299
||| || || |||||||||||||||||||| | ||||||||||||||||||||||| ||
Sbjct 241 GCTATC-GGAACAGGGAGCATTGGACTCGCAGCTGGAAGATCTCATCCTTCTCGCTCTCC 299
Query 300 AGTGATTAGGAACCCTATGGCAAGGCGTCCACAGATGGCAACTCCACAGTTAGCTGATGA 359
||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 300 TGTGATTAGGAATCCTATGGCAAGGCGTCAACAGATGGCAACTCCACAGTTAGTTGATGA 359
Query 360 GGACAATGAAGATGATGATTTTTCAGTGGATGTATCGAGCAGCAGACCAAGTATTGGACT 419
||||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||
Sbjct 360 GGACAATGAGGATGATGATTTTTCAGTGGATGTAACGAGCAGTAGACCAAGTATTGGACT 419
Query 420 TCCTGGTGGAAGAGCTATGAGACCTCAGTCTCCTGTGATGACTAAGATTGCACCTCCGAG 479
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 420 TCCTGGTGGAAGAGCAATGAGACCTCAGTCTCCTGTGATGACTAAGATTGCACCTCCGAG 479
Query 480 ACGTACACAACCAGCAAATGAAGGAAATAAGAATGACGGT---GATGATGATGATGTTGT 536
||||||||||||| |||| ||||||||||||||||||||| |||||||||||||||||
Sbjct 480 ACGTACACAACCAACAAACGAAGGAAATAAGAATGACGGTAATGATGATGATGATGTTGT 539
Query 537 TTC-AGTAGATTATGCAATTGGTAGACCAAGTATTGGGCTTGGAAGTGGGAAGGCAATGC 595
||| | |||||||| |||||||||||||||||||||||||||||||||||| ||| ||||
Sbjct 540 TTCTA-TAGATTATACAATTGGTAGACCAAGTATTGGGCTTGGAAGTGGGAGGGCTATGC 598
Query 596 GGCCACAGTCTTCTATGAACAAAACCCAACCACAAGGGCGTCCCGTGATGGCAGCTCATC 655
||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 599 GGCCACAATCTTCTATGAACAAAACCCAACCACAAGGGCGTCCGGTGATGGCAGCTCATC 658
Query 656 AGCCAGTGGATGAGGATAACGAAGATGATGAGACTCCATATGTTTATACAAGCGGCATTC 715
||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 659 AGCGAGCAGATGAGGATAACGAAGATGATGAGACTCCATATGTTTATACAAGCAGCATTC 718
Query 716 CAAGTGTAGGACTTCCTGGTGGAAGGGGAGCTCGGTCACGTTCTCCTCTGACTAAAAATC 775
||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 719 CAAGTGTAGGACTTCCTGGTGGAAGGGCTGCACGGTCACGTTCTCCTCTGACTAAAAACC 778
Query 776 CTCCATTGAGGCATCCACAAGCAGTAGCTCAGCCACCAGCCAATAAAGACAGTGATGCTG 835
||||| ||||||||||||| |||||||||||||||||| ||||| ||| ||||||| ||
Sbjct 779 CTCCACTGAGGCATCCACATGCAGTAGCTCAGCCACCATCCAATGGAGAAAGTGATGTTG 838
Query 836 ATTATGATGAGTCGTATACTAGTGGAATGCCAAGCATTGGACTTGCGGGTGGACGATCAA 895
||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct 839 ATTATGATGAGTCGTATACTAGTGGCATGCCAAGCATTGGACTTGCAGGTGGACGATCAA 898
Query 896 TGAGACCTCGCACTCCTTTG 915
||||||||||||||||||||
Sbjct 899 TGAGACCTCGCACTCCTTTG 918
Score = 878 bits (475), Expect = 0.0
Identities = 545/576 (95%), Gaps = 15/576 (3%)
Strand=Plus/Plus
Query 1008 GTCAATTCGTACTAAGGAACAACCTCAGACCGGACTTCCAACTTCAGGTAGCCGATCCTC 1067
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 918 GTCAATTCGTACTAAGGAACAACCTCAGACCGGACTTCCAACTTCAGGTAGCCGATCTTC 977
Query 1068 ATTATGTGAGGATTCCACAGAATCTTCAGC----T--A---T------TCCATCTCAGAC 1112
||||| |||||||||||||||||||||||| | | | ||||||||||||
Sbjct 978 ATTATATGAGGATTCCACAGAATCTTCAGCTATGTCAACTTTGACGCATCCATCTCAGAC 1037
Query 1113 AACAAACCAAGTGGAGCAATCTCCATCTGCTCGTTCTGCATTCTCTACCAAATCATCTCA 1172
|||||||||||||||||||||||||||||||||||||||| |||||| ||||||||| ||
Sbjct 1038 AACAAACCAAGTGGAGCAATCTCCATCTGCTCGTTCTGCAATCTCTAACAAATCATCCCA 1097
Query 1173 GTCTCTCAGTGCTATGGATCAACCTCCATCAGCTCGTTCATCTTTCAGTGGTCGTCCAAT 1232
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 1098 GTCTCTCAGTGCTATGGACCAACCTCCATCAGCTCGTTCATCTTTCAATGGTCGTCCAAT 1157
Query 1233 AAGGACAGTTCCATTAATGCCATCTTCGGTGCCTATATCACTCAAACCAGTGACTCCTGC 1292
|||||||| ||| |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1158 AAGGACAGCTCCTTTAATGCCATCTTCTGTGCCTATATCACTCAAACCAGTGACTCCTGC 1217
Query 1293 ATTTCAATCTGATACGCCAACCAATCTTCGAAAAGATAAAAGGTTTTCCATGGATATGGG 1352
|||||||||| | |||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1218 ATTTCAATCTAACACGCCAACCAATCTTCGAAAAGATAAAAGGTTTTCCATGGATTTGGG 1277
Query 1353 AAGCTCAGGCAACTTAAGAGAGTTAGGGAGCCAACGTTCTACTTCAGCTTTGCAAGATGA 1412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1278 AAGCTCAGGCAACTTAAGAGAGTTAGGGAGCCAACGTTCTACTTCAGCTTTGCAAGATGA 1337
Query 1413 GGTTGATATGCTACAGGAAGAAAATGAAAGTTTGTTAGAAAAGCTTCGACTTGCAGAAGA 1472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1338 GGTTGATATGCTACAGGAAGAAAATGAAAGTTTGTTAGAAAAGCTTCGACTTGCAGAAGA 1397
Query 1473 TAAGTGTGAAGAAGCAGATGCAAGAGCTAAGCAACTTGAGAAACAGGTTGAAATCCTTGG 1532
||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1398 TAAATGTGAAGAGGCTGATGCAAGAGCTAAGCAACTTGAGAAACAGGTTGAAATCCTTGG 1457
Query 1533 AGAAGGTGTTACTATGGACGCACGTCTTTTAAGCAG 1568
||||||||||||||||||||||||||||||||||||
Sbjct 1458 AGAAGGTGTTACTATGGACGCACGTCTTTTAAGCAG 1493
Score = 444 bits (240), Expect = 2e-123
Identities = 262/273 (96%), Gaps = 0/273 (0%)
Strand=Plus/Plus
Query 1691 CATCTTCTTTAGAGCAGCTTCATGAAGTTGAATTAGAGCTTAACTCTCTTAAGACCGTGA 1750
||||||| || || ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1598 CATCTTCATTGGACCAGCTTCATGAAGTTGAATTAGAGCTTAACTCTCTTAAGACCGTGA 1657
Query 1751 CCAAGAGATTGGTATTGACTCAGGAGGAGATGGAAGAGGTTGTTCTGAAGAGGTGCTGGC 1810
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1658 CCAAGAGATTGATATTGACTCAGGAGGAGATGGAAGAGGTTGTTCTGAAGAGGTGCTGGC 1717
Query 1811 TTTCACGTTATTGGGGCTTATGTGTTAGACATGGCATTCAAGCGGACATTGCAGGAGCAA 1870
||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||| ||
Sbjct 1718 TTTCACGATATTGGGGCTTATGCGTTAGACATGGCATTCAACCGGACATTGCAGGAGGAA 1777
Query 1871 AGCACGAATACTGGTCATCATTTGCACCTCTTCCTCTAGAGATTGTTCTGTCTGCAGGAC 1930
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1778 AACACGAATACTGGTCATCATTTGCACCTCTTCCTCTAGAGATTGTTCTTTCTGCAGGAC 1837
Query 1931 AAAGAGCAAGGGACGGAGTTTCACAATCTAATA 1963
||||||||||||||||||||||||||| |||||
Sbjct 1838 AAAGAGCAAGGGACGGAGTTTCACAATGTAATA 1870
Score = 427 bits (231), Expect = 2e-118
Identities = 267/285 (94%), Gaps = 0/285 (0%)
Strand=Plus/Plus
Query 2149 GAGTTAAGCGAGGAGGAAGTTGAAGATGTGAGTTTTAAACAGGCCTGGCTCTCATATTTC 2208
||||| ||||| || |||||||||||||||| |||||||||||||||||| |||||||||
Sbjct 2254 GAGTTGAGCGACGAAGAAGTTGAAGATGTGAATTTTAAACAGGCCTGGCTTTCATATTTC 2313
Query 2209 TGGAGAAGAGCTAAAAACCATGATATCGAATCTGATCTTGCGGATGAGCGACTCCAGTAT 2268
||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||
Sbjct 2314 TGGAGAAGAGCTAAAAACCATGAAATCGAATCTGATCTAGTAGATGAGCGACTCCAGTAT 2373
Query 2269 TGGATAAACCAAGGGACTCGATCTGCCACATCACAGGACGCTGTTGATGTTGAAGGAGGG 2328
||||||||||||||||||||||||||||||||||| || ||||| ||||||||| |||||
Sbjct 2374 TGGATAAACCAAGGGACTCGATCTGCCACATCACAAGATGCTGTCGATGTTGAAAGAGGG 2433
Query 2329 CTAATGGAGCTGAGGAAGCTGAACATAGAGTCACAGCTCTGGCAAAAATCAAGGAAAGGG 2388
|| ||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 2434 CTTATGGAGCTGAGGAAGCTGAACATAGAGTCACAGTTATGGCAAAAATCAAGGAAAGGG 2493
Query 2389 CTTGACCATGAAGCCAACCCTTCTCATCTTGAACTTTCCTTCTGA 2433
|||||||||||| | ||||||||||||||||||||||||||||||
Sbjct 2494 CTTGACCATGAATCTAACCCTTCTCATCTTGAACTTTCCTTCTGA 2538
Score = 209 bits (113), Expect = 8e-53
Identities = 119/122 (98%), Gaps = 0/122 (0%)
Strand=Plus/Plus
Query 1958 CTAATAACACTTACGGCGAAAGAGAAAAATCATTGCAAAACTTGCACGAAACTTCTGGAG 2017
||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1961 CTAATAACACTTATGGCGAAAGAGAAAAATCATTGCAAAACTTGCAAGAAACTTCTGGGG 2020
Query 2018 AAGGAAATCTCGAAAACATGATATGGGTCGAGAAAGGTTTGCGGGAGCTGGCTTCACTAA 2077
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2021 AAGGAAATCTCGAAAACATGATATGGGTCGAGAAAGGTTTGCGGGAGCTGGCTTCACTAA 2080
Query 2078 AG 2079
||
Sbjct 2081 AG 2082
Score = 137 bits (74), Expect = 4e-31
Identities = 76/77 (99%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 2074 CTAAAGGTTCAGGAGGCAGTTGCGTTTGTCATGGCTCAAAATAGACGGAACACATCATCA 2133
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 2137 CTAAAGGTTCAGGAGGCAGTTGCATTTGTCATGGCTCAAAATAGACGGAACACATCATCA 2196
Query 2134 AAGTTTTTTGTTTCAGA 2150
|||||||||||||||||
Sbjct 2197 AAGTTTTTTGTTTCAGA 2213
Score = 132 bits (71), Expect = 2e-29
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1568 GAAAAGAGGCAGCTCTACAACAGAGAGAGGCTGCTTTGAGAGTTGCATCACAAAATCATG 1627
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1521 GAAAAGAGGCAGCTCTACAACAGAGAGAGGCTGCTTTGAGAATTGCATCACAAAATCATG 1580
Query 1628 GAGGAAGGAGGGAAGAT 1644
|||||| ||||||||||
Sbjct 1581 GAGGAAAGAGGGAAGAT 1597
> AT4G08645.1 | Symbols: | pseudogene, hypothetical protein |
chr4:5514498-5515676 REVERSE LENGTH=1179
Length=1179
Score = 132 bits (71), Expect = 2e-29
Identities = 75/77 (97%), Gaps = 0/77 (0%)
Strand=Plus/Plus
Query 1595 AGGCTGCTTTGAGAGTTGCATCACAAAATCATGGAGGAAGGAGGGAAGATGTTTCGGCTC 1654
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 777 AGGCTGCTTTGAGAGTTGCATCACAAAATCATGGAGGAAGGAGGGTAGATGTTTTGGCTC 836
Query 1655 TTCACACAGAAGCTGAG 1671
|||||||||||||||||
Sbjct 837 TTCACACAGAAGCTGAG 853
Score = 113 bits (61), Expect = 7e-24
Identities = 65/67 (97%), Gaps = 0/67 (0%)
Strand=Plus/Plus
Query 1454 AGCTTCGACTTGCAGAAGATAAGTGTGAAGAAGCAGATGCAAGAGCTAAGCAACTTGAGA 1513
|||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 328 AGCTTCGACTTGCAGAAGATAAGTGTGAAGAATCAGATGCTAGAGCTAAGCAACTTGAGA 387
Query 1514 AACAGGT 1520
|||||||
Sbjct 388 AACAGGT 394
Score = 86.1 bits (46), Expect = 1e-15
Identities = 50/52 (96%), Gaps = 0/52 (0%)
Strand=Plus/Plus
Query 1517 AGGTTGAAATCCTTGGAGAAGGTGTTACTATGGACGCACGTCTTTTAAGCAG 1568
|||||||||||||||||||||||||||||||| |||||||||||| ||||||
Sbjct 509 AGGTTGAAATCCTTGGAGAAGGTGTTACTATGAACGCACGTCTTTAAAGCAG 560
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120832711815
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5