BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg340677 Length=1902 Score E Sequences producing significant alignments: (Bits) Value AT3G05110.1 | Symbols: | Domain of unknown function (DUF3444) ... 952 0.0 AT3G04960.3 | Symbols: | Domain of unknown function (DUF3444) ... 505 8e-142 > AT3G05110.1 | Symbols: | Domain of unknown function (DUF3444) | chr3:1426297-1427719 REVERSE LENGTH=1119 Length=1119 Score = 952 bits (515), Expect = 0.0 Identities = 630/683 (92%), Gaps = 17/683 (2%) Strand=Plus/Plus Query 1105 AATGATGAGGACCATGAGCCATTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCAGC 1164 ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| || Sbjct 451 AATGATGAGGATCATGAGCCAGTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCCGC 510 Query 1165 AAGACAATGAGCTCTATCATGGCTGGTCAAGTATGGGCTCTATATGATAACATAGATTCA 1224 ||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| || Sbjct 511 AAGACAATGAGCTCTTTCATGGCTGGTCAAGTATGGGCTCTGTATGATGGTATAGACTCT 570 Query 1225 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 1284 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 571 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 630 Query 1285 ACATGGTTAGAACCTAAAGATGAGGAATCTGTTCTTGCTGCTTGCGGTAGGTTCAAATGG 1344 ||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| Sbjct 631 ACATGGTTAGAACCTAAAGCTGAGGAATCTGTTCTTGCTGCTTGCGGCAGGTTCAAATGG 690 Query 1345 GGGAATACAGAAACCGTAAAAAGCCATTTGGCCTTTTCCCATGAGATACATCCCATCATA 1404 | ||||||||| ||| || |||| || ||||||||||| ||||||||||||||||||||| Sbjct 691 GAGAATACAGATACCATACAAAGTCACTTGGCCTTTTCTCATGAGATACATCCCATCATA 750 Query 1405 CGTGGCAAACACTTCATTGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 1464 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 751 CGTGGCAAACACTTCATCGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 810 Query 1465 GACTGGAGCAAAAGCTGGAACAATAACC-GGAAACAGCACAA-ACCTCCTTATAGGTACG 1522 |||||||||||||||||||||||| ||| |||| |||||||| || |||||||||||||| Sbjct 811 GACTGGAGCAAAAGCTGGAACAATGACCCGGAA-CAGCACAAGAC-TCCTTATAGGTACG 868 Query 1523 ACTTTGTGGAAGTTCTAGTCAACTTCGACGATTGTCTAGGTGTTGGAGTGGCCTATTTAG 1582 ||||||||||||||||||||| ||||||||||| |||||| ||||||||||||||||||| Sbjct 869 ACTTTGTGGAAGTTCTAGTCAGCTTCGACGATTCTCTAGGCGTTGGAGTGGCCTATTTAG 928 Query 1583 GGAAGGTTCAAGGATTTGCATCGGTCTATAAACAAGCTGGGCAGCATGGAGTCATCTCAT 1642 | |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| | Sbjct 929 GAAAGGTTCAGGGATTTGCATCGGTCTATAAACAAGCTGTGCAGCATGGAGTCATCTCTT 988 Query 1643 TCATGATCACACCAGAGGAAATGCAAAGATTCTCTCACAAAGTGCCGTCATTTAGGTTGA 1702 ||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 989 TCATGATCACACCGGAGGAAATGCAAAGATTCTCTCACAGAGTGCCGTCATTTAGGTTGA 1048 Query 1703 ATGGAGAGGAGAAAGAGGGAGTTCCCGCTGGTTCTTTCGAGCTAGACCCTGCTGCTATCC 1762 ||||||| |||||||||||| | ||| | | || | ||| |||||||||||||| Sbjct 1049 ATGGAGATGAGAAAGAGGGAAT-CCC-CAG-TT-----G--CTAT-CCCTGCTGCTATCC 1097 Query 1763 CCAGTT-CTACACTCAAGCGTGA 1784 |||||| | |||||| ||| ||| Sbjct 1098 CCAGTTGC-ACACTCGAGCCTGA 1119 Score = 143 bits (77), Expect = 7e-33 Identities = 105/118 (89%), Gaps = 4/118 (3%) Strand=Plus/Plus Query 799 AGAGATGTGGAAGTTAAGATTAAGTTTCTT-GAGCTAAGGGAGAAGGAACTTGGAGA-AA 856 ||||| ||||||| ||||| |||||| || || |||| |||||||||||||| ||| || Sbjct 229 AGAGAGGTGGAAGCTAAGAGAAAGTTT-TTCGACCTAAAGGAGAAGGAACTTGAAGAGAA 287 Query 857 GGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGATCAATACAAGCTGG 914 |||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| Sbjct 288 -GGAGAAAGAGCTGGAATTGAAACAGAGACAAGTACAAGAACGATCAATACAAGATGG 344 > AT3G04960.3 | Symbols: | Domain of unknown function (DUF3444) | chr3:1373688-1375850 FORWARD LENGTH=2030 Length=2030 Score = 505 bits (273), Expect = 8e-142 Identities = 481/580 (83%), Gaps = 19/580 (3%) Strand=Plus/Plus Query 375 AAATGAATCTGATTTGAAACGGTTTCTGGAAGAAAATGTGGCGAGATTGGTTCTTGAGAA 434 ||||||||||||| ||| || ||| |||||| |||||| ||||||||||||| | || Sbjct 560 AAATGAATCTGATCTGATACTGTTAATGGAAGCGAATGTGATGAGATTGGTTCTTCA-AA 618 Query 435 -GCAGAATGAAGAAATGGTGGTTGCTCAGCTTAACGCACATGAGAA--------ATT-GC 484 |||| |||| || |||||||||||||||| ||||| || ||||| || || Sbjct 619 TGCAGTTTGAACAAGTGGTGGTTGCTCAGCTCAACGCCCAAGAGAACTTTCTTGGTTCGC 678 Query 485 TTCAGGGTTCGATGAAGCTGAAGCATGAAGAGCTTATCAGAGAGGTTGAAGCGAGGAGAG 544 | || | |||||||| | ||||||||||||||| || | |||| ||||||| |||| | Sbjct 679 TCCATGATTCGATGATGAAGAAGCATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAA 738 Query 545 AGGAGGTTGCTTTGCTTTCCAAGTCCATCGATGCCAAGGCTTGTGATTTAGATATGAAAG 604 | |||||||||||| |||| ||| | |||||||||||| ||||||||||||| ||||||| Sbjct 739 ATGAGGTTGCTTTGATTTCTAAGACGATCGATGCCAAGACTTGTGATTTAGACATGAAAG 798 Query 605 TGAAGGCCTTTGATCTGAAGCAAACAACAGAGTCTGAGAGAATGAGAATGGAGACTGAGC 664 | || | ||||||||| ||||||||||||||||||||||||||||||| |||||||||| Sbjct 799 TCAAAGACTTTGATCTTAAGCAAACAACAGAGTCTGAGAGAATGAGAAAAGAGACTGAGC 858 Query 665 TGATTGAAACATCTCTTAAGCAACTTGAAGCGAGGGAGAATGAGCTTAGGTTGCTTAATG 724 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 859 TGATGGAAACATCTCTTAAGCAACTTGAAGCCAGGGAGAATGAGCTTAGGTTGCTTAATG 918 Query 725 AGACCATCAAAGAGAAATCGATTGAACTGGAGAAGAAAGAAGAGAACTTTCAACTGATAC 784 |||||||| ||| ||||||||| || |||||||||||||||| ||||||||||||| || Sbjct 919 AGACCATCCAAGGGAAATCGATGGAGCTGGAGAAGAAAGAAGTCAACTTTCAACTGAAAC 978 Query 785 AACAAGCA-CAAGCCAGAGATG--TGGAAGTTAAGATTAAGTTTCTTGAGCTAAGGGAGA 841 | ||||| || |||||||| | || |||| |||| |||||||||||| ||| ||| | Sbjct 979 ATGAAGCAGCA-GCCAGAGA-GACTG-AAGTGAAGAACAAGTTTCTTGAGTTAAAGGAAA 1035 Query 842 AGGAACTTGGAGAAAGGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGAT 901 || |||||| |||||||||| || | |||| |||||||||||| || | || ||| | Sbjct 1036 AGAAACTTGAAGAAAGGGAGCAACATTTGGAGTTGAAACAGAGAAAAAAAGAAAAACCAG 1095 Query 902 CAATACA-AGCTGGGACTCGAAAGAGAACTAGGGTTGAAT 940 ||||| | ||| | |||||| |||||| ||||| |||||| Sbjct 1096 CAATA-AGAGCAGAGACTCGTAAGAGATCTAGGCTTGAAT 1134 Score = 220 bits (119), Expect = 3e-56 Identities = 273/342 (80%), Gaps = 31/342 (9%) Strand=Plus/Plus Query 47 CGGATCAGGAACCGGCGGCT-GCACAAACTGAAGATCATTCTC---GAA-A--AAGGGTT 99 |||| ||||| || || ||| || || | ||||||||| |||| ||| | |||||| Sbjct 205 CGGAGCAGGATCCCGC-GCTGGCGCAGAGTGAAGATCAGTCTCAAGGAAGACTTAGGGTT 263 Query 100 TCTGCTTATGAGCTTATGGTAGTGGACAGTGATTTAGAGGGAGTT-GAT-aaaaaaaTGG 157 ||||||||||| ||||||||||| |||||||||||||||||| || ||| ||| ||| || Sbjct 264 TCTGCTTATGACCTTATGGTAGTAGACAGTGATTTAGAGGGA-TTAGATCAAAGAAA-GG 321 Query 158 ACA-AGTTGCGTAATATCTTAGAACAGATTCAGAAGAAAGCTTCATCAGTTCTTGAGTTC 216 | | || ||||||| || || || | |||||| | |||||||||| | ||||| ||||| Sbjct 322 A-AGAGATGCGTAACATTTTTGATGATATTCAGGATAAAGCTTCATTAATTCTTCAGTTC 380 Query 217 TCGCCTT-GGTGGGAAGAAATCGATG--AGGAATTGGATTTGCTAAAGCAACGAGCCATG 273 || ||| ||||||||||||||| | ||| |||| ||| ||||||||||||||| Sbjct 381 TC-ACTTAAGTGGGAAGAAATCGACGACAGG-TTTGG-TTTTCTAAAGCAACGAGCC--- 434 Query 274 GAAGTGGATTTGAAGGAGG-CATCTCTAAAAAATCAGATTCTGGAGCTGGAGAAGAAGGA 332 | |||| |||||||| | ||| | ||||||||||||||||||||||||||||| Sbjct 435 --A-TGGA---GAAGGAGGTC-TCTGTCCGGAATCAGATTCTGGAGCTGGAGAAGAAGGA 487 Query 333 AGAGCGTCTTAAGCTTGTTGAAGAGAGAGCGAGGAAGATTGA 374 |||||| || | |||||||||||| |||| |||||||||||| Sbjct 488 AGAGCGACTGAGGCTTGTTGAAGAAAGAGAGAGGAAGATTGA 529 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 94176222420 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5