BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340677
Length=1902
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05110.1 | Symbols: | Domain of unknown function (DUF3444) ... 952 0.0
AT3G04960.3 | Symbols: | Domain of unknown function (DUF3444) ... 505 8e-142
> AT3G05110.1 | Symbols: | Domain of unknown function (DUF3444)
| chr3:1426297-1427719 REVERSE LENGTH=1119
Length=1119
Score = 952 bits (515), Expect = 0.0
Identities = 630/683 (92%), Gaps = 17/683 (2%)
Strand=Plus/Plus
Query 1105 AATGATGAGGACCATGAGCCATTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCAGC 1164
||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 451 AATGATGAGGATCATGAGCCAGTAATGTGTGTTGTTGATTCAGAGTTCAATGATTTCCGC 510
Query 1165 AAGACAATGAGCTCTATCATGGCTGGTCAAGTATGGGCTCTATATGATAACATAGATTCA 1224
||||||||||||||| ||||||||||||||||||||||||| |||||| ||||| ||
Sbjct 511 AAGACAATGAGCTCTTTCATGGCTGGTCAAGTATGGGCTCTGTATGATGGTATAGACTCT 570
Query 1225 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 1284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 571 ATGCCTAGGTGTTATGGTCGGATCAAGAAAGTTAACAAGTGTCAGTCGAGTCTTCAAGTG 630
Query 1285 ACATGGTTAGAACCTAAAGATGAGGAATCTGTTCTTGCTGCTTGCGGTAGGTTCAAATGG 1344
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 631 ACATGGTTAGAACCTAAAGCTGAGGAATCTGTTCTTGCTGCTTGCGGCAGGTTCAAATGG 690
Query 1345 GGGAATACAGAAACCGTAAAAAGCCATTTGGCCTTTTCCCATGAGATACATCCCATCATA 1404
| ||||||||| ||| || |||| || ||||||||||| |||||||||||||||||||||
Sbjct 691 GAGAATACAGATACCATACAAAGTCACTTGGCCTTTTCTCATGAGATACATCCCATCATA 750
Query 1405 CGTGGCAAACACTTCATTGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 1464
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 751 CGTGGCAAACACTTCATCGCTGTGAATCCGAGTAAAGGCGAAACGTGGGCTCTTTTCAGA 810
Query 1465 GACTGGAGCAAAAGCTGGAACAATAACC-GGAAACAGCACAA-ACCTCCTTATAGGTACG 1522
|||||||||||||||||||||||| ||| |||| |||||||| || ||||||||||||||
Sbjct 811 GACTGGAGCAAAAGCTGGAACAATGACCCGGAA-CAGCACAAGAC-TCCTTATAGGTACG 868
Query 1523 ACTTTGTGGAAGTTCTAGTCAACTTCGACGATTGTCTAGGTGTTGGAGTGGCCTATTTAG 1582
||||||||||||||||||||| ||||||||||| |||||| |||||||||||||||||||
Sbjct 869 ACTTTGTGGAAGTTCTAGTCAGCTTCGACGATTCTCTAGGCGTTGGAGTGGCCTATTTAG 928
Query 1583 GGAAGGTTCAAGGATTTGCATCGGTCTATAAACAAGCTGGGCAGCATGGAGTCATCTCAT 1642
| |||||||| |||||||||||||||||||||||||||| |||||||||||||||||| |
Sbjct 929 GAAAGGTTCAGGGATTTGCATCGGTCTATAAACAAGCTGTGCAGCATGGAGTCATCTCTT 988
Query 1643 TCATGATCACACCAGAGGAAATGCAAAGATTCTCTCACAAAGTGCCGTCATTTAGGTTGA 1702
||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 989 TCATGATCACACCGGAGGAAATGCAAAGATTCTCTCACAGAGTGCCGTCATTTAGGTTGA 1048
Query 1703 ATGGAGAGGAGAAAGAGGGAGTTCCCGCTGGTTCTTTCGAGCTAGACCCTGCTGCTATCC 1762
||||||| |||||||||||| | ||| | | || | ||| ||||||||||||||
Sbjct 1049 ATGGAGATGAGAAAGAGGGAAT-CCC-CAG-TT-----G--CTAT-CCCTGCTGCTATCC 1097
Query 1763 CCAGTT-CTACACTCAAGCGTGA 1784
|||||| | |||||| ||| |||
Sbjct 1098 CCAGTTGC-ACACTCGAGCCTGA 1119
Score = 143 bits (77), Expect = 7e-33
Identities = 105/118 (89%), Gaps = 4/118 (3%)
Strand=Plus/Plus
Query 799 AGAGATGTGGAAGTTAAGATTAAGTTTCTT-GAGCTAAGGGAGAAGGAACTTGGAGA-AA 856
||||| ||||||| ||||| |||||| || || |||| |||||||||||||| ||| ||
Sbjct 229 AGAGAGGTGGAAGCTAAGAGAAAGTTT-TTCGACCTAAAGGAGAAGGAACTTGAAGAGAA 287
Query 857 GGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGATCAATACAAGCTGG 914
|||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct 288 -GGAGAAAGAGCTGGAATTGAAACAGAGACAAGTACAAGAACGATCAATACAAGATGG 344
> AT3G04960.3 | Symbols: | Domain of unknown function (DUF3444)
| chr3:1373688-1375850 FORWARD LENGTH=2030
Length=2030
Score = 505 bits (273), Expect = 8e-142
Identities = 481/580 (83%), Gaps = 19/580 (3%)
Strand=Plus/Plus
Query 375 AAATGAATCTGATTTGAAACGGTTTCTGGAAGAAAATGTGGCGAGATTGGTTCTTGAGAA 434
||||||||||||| ||| || ||| |||||| |||||| ||||||||||||| | ||
Sbjct 560 AAATGAATCTGATCTGATACTGTTAATGGAAGCGAATGTGATGAGATTGGTTCTTCA-AA 618
Query 435 -GCAGAATGAAGAAATGGTGGTTGCTCAGCTTAACGCACATGAGAA--------ATT-GC 484
|||| |||| || |||||||||||||||| ||||| || ||||| || ||
Sbjct 619 TGCAGTTTGAACAAGTGGTGGTTGCTCAGCTCAACGCCCAAGAGAACTTTCTTGGTTCGC 678
Query 485 TTCAGGGTTCGATGAAGCTGAAGCATGAAGAGCTTATCAGAGAGGTTGAAGCGAGGAGAG 544
| || | |||||||| | ||||||||||||||| || | |||| ||||||| |||| |
Sbjct 679 TCCATGATTCGATGATGAAGAAGCATGAAGAGCTAATGACAGAGCTTGAAGCAAGGAAAA 738
Query 545 AGGAGGTTGCTTTGCTTTCCAAGTCCATCGATGCCAAGGCTTGTGATTTAGATATGAAAG 604
| |||||||||||| |||| ||| | |||||||||||| ||||||||||||| |||||||
Sbjct 739 ATGAGGTTGCTTTGATTTCTAAGACGATCGATGCCAAGACTTGTGATTTAGACATGAAAG 798
Query 605 TGAAGGCCTTTGATCTGAAGCAAACAACAGAGTCTGAGAGAATGAGAATGGAGACTGAGC 664
| || | ||||||||| ||||||||||||||||||||||||||||||| ||||||||||
Sbjct 799 TCAAAGACTTTGATCTTAAGCAAACAACAGAGTCTGAGAGAATGAGAAAAGAGACTGAGC 858
Query 665 TGATTGAAACATCTCTTAAGCAACTTGAAGCGAGGGAGAATGAGCTTAGGTTGCTTAATG 724
|||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 859 TGATGGAAACATCTCTTAAGCAACTTGAAGCCAGGGAGAATGAGCTTAGGTTGCTTAATG 918
Query 725 AGACCATCAAAGAGAAATCGATTGAACTGGAGAAGAAAGAAGAGAACTTTCAACTGATAC 784
|||||||| ||| ||||||||| || |||||||||||||||| ||||||||||||| ||
Sbjct 919 AGACCATCCAAGGGAAATCGATGGAGCTGGAGAAGAAAGAAGTCAACTTTCAACTGAAAC 978
Query 785 AACAAGCA-CAAGCCAGAGATG--TGGAAGTTAAGATTAAGTTTCTTGAGCTAAGGGAGA 841
| ||||| || |||||||| | || |||| |||| |||||||||||| ||| ||| |
Sbjct 979 ATGAAGCAGCA-GCCAGAGA-GACTG-AAGTGAAGAACAAGTTTCTTGAGTTAAAGGAAA 1035
Query 842 AGGAACTTGGAGAAAGGGAGAAAGAGCTGGAATTGAAACAGAGAGAAGTACAAGAACGAT 901
|| |||||| |||||||||| || | |||| |||||||||||| || | || ||| |
Sbjct 1036 AGAAACTTGAAGAAAGGGAGCAACATTTGGAGTTGAAACAGAGAAAAAAAGAAAAACCAG 1095
Query 902 CAATACA-AGCTGGGACTCGAAAGAGAACTAGGGTTGAAT 940
||||| | ||| | |||||| |||||| ||||| ||||||
Sbjct 1096 CAATA-AGAGCAGAGACTCGTAAGAGATCTAGGCTTGAAT 1134
Score = 220 bits (119), Expect = 3e-56
Identities = 273/342 (80%), Gaps = 31/342 (9%)
Strand=Plus/Plus
Query 47 CGGATCAGGAACCGGCGGCT-GCACAAACTGAAGATCATTCTC---GAA-A--AAGGGTT 99
|||| ||||| || || ||| || || | ||||||||| |||| ||| | ||||||
Sbjct 205 CGGAGCAGGATCCCGC-GCTGGCGCAGAGTGAAGATCAGTCTCAAGGAAGACTTAGGGTT 263
Query 100 TCTGCTTATGAGCTTATGGTAGTGGACAGTGATTTAGAGGGAGTT-GAT-aaaaaaaTGG 157
||||||||||| ||||||||||| |||||||||||||||||| || ||| ||| ||| ||
Sbjct 264 TCTGCTTATGACCTTATGGTAGTAGACAGTGATTTAGAGGGA-TTAGATCAAAGAAA-GG 321
Query 158 ACA-AGTTGCGTAATATCTTAGAACAGATTCAGAAGAAAGCTTCATCAGTTCTTGAGTTC 216
| | || ||||||| || || || | |||||| | |||||||||| | ||||| |||||
Sbjct 322 A-AGAGATGCGTAACATTTTTGATGATATTCAGGATAAAGCTTCATTAATTCTTCAGTTC 380
Query 217 TCGCCTT-GGTGGGAAGAAATCGATG--AGGAATTGGATTTGCTAAAGCAACGAGCCATG 273
|| ||| ||||||||||||||| | ||| |||| ||| |||||||||||||||
Sbjct 381 TC-ACTTAAGTGGGAAGAAATCGACGACAGG-TTTGG-TTTTCTAAAGCAACGAGCC--- 434
Query 274 GAAGTGGATTTGAAGGAGG-CATCTCTAAAAAATCAGATTCTGGAGCTGGAGAAGAAGGA 332
| |||| |||||||| | ||| | |||||||||||||||||||||||||||||
Sbjct 435 --A-TGGA---GAAGGAGGTC-TCTGTCCGGAATCAGATTCTGGAGCTGGAGAAGAAGGA 487
Query 333 AGAGCGTCTTAAGCTTGTTGAAGAGAGAGCGAGGAAGATTGA 374
|||||| || | |||||||||||| |||| ||||||||||||
Sbjct 488 AGAGCGACTGAGGCTTGTTGAAGAAAGAGAGAGGAAGATTGA 529
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 94176222420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5