BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340683
Length=1386
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05155.1 | Symbols: | Major facilitator superfamily protein... 1517 0.0
AT3G05400.1 | Symbols: | Major facilitator superfamily protein... 1098 0.0
> AT3G05155.1 | Symbols: | Major facilitator superfamily protein
| chr3:1448570-1451213 FORWARD LENGTH=1287
Length=1287
Score = 1517 bits (821), Expect = 0.0
Identities = 930/982 (95%), Gaps = 9/982 (1%)
Strand=Plus/Plus
Query 1 ATGGAGGGAGAGAATAGGAGCATTATTGAGAAAGGATTATTATTGGTAAATAAGGAAGAG 60
||||||||||||||||| ||| ||||||||||||||||||||| ||| |||||||||
Sbjct 78 ATGGAGGGAGAGAATAGTAGC---ATTGAGAAAGGATTATTATTGATAAGGAAGGAAGAG 134
Query 61 AGTGCAAATACAACTCCACTTCTTGTCTTCACCACTTTCATCATTGTCTCTGCCTCCTTC 120
|||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 135 AGTGCAAATACAACTCCATTTCTTGTCTTCACCACTTTCATCATTGTCTCTGCTTCCTTC 194
Query 121 T-CTTTCGGCGTTGCCTTAGGGCATACTGCTGGTACAATGGCCTCCATTATTGAAGATCT 179
| |||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||
Sbjct 195 TCCTTT-GGCGTTGCCTTAGGACATACTGCTGGTACAATGGCCTCCATTATGGAAGATCT 253
Query 180 TGATCTTTCTATCACACAATTTTCTGTATTTGGTTCGTTGTTGACATTTGGAGGAATG-T 238
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
Sbjct 254 TGATCTTTCTATCACACAATTTTCTGTATTTGGTTCACTATTGACATTTGGAGGAATGAT 313
Query 239 TGGGTGCAATATTTAGCGCCACGATTGCAGATTCATTTGGTTGTAAAATGACTTTGTGGA 298
| || ||| ||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 314 T-GGAGCACTATTTAGCGCCACAATTGCAGATTCATTTGGTTGTAAAATGACTTTGTGGA 372
Query 299 TCTCTGAGGTATTCTGCATAACTGGATGGCTTGCAATTGCACTAGCCAAGAATATTATTT 358
|| |||||||||||||||||| |||||||||||||||||||||||||||||| |||||||
Sbjct 373 TCACTGAGGTATTCTGCATAAGTGGATGGCTTGCAATTGCACTAGCCAAGAACATTATTT 432
Query 359 GGCTGGACTTGGGACGATTCTTTGTAGGAATTGGAGTTGGTCTCCTTAGTTACGTGGTTC 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 433 GGCTGGACTTGGGACGATTCTTTGTAGGAATTGGAGTTGGTCTCCTTAGTTACGTGGTTC 492
Query 419 CTGTATATATTGCAGAAATAACTCCCAAAACTGTGCGAGGCACTTATACATTTAGTAATC 478
|||||||||| |||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct 493 CTGTATATATCGCAGAAATAACTCCTAAAACTGTGCGAGGCACTTTTACATTTAGTAATC 552
Query 479 AGTTGTTGCAAAATTGTGGGGTGGCAACCGCGTATTACCTAGGAAATTTCATATCATGGA 538
|||| |||||||||||||| || ||||| ||||||||||| ||||||||||| |||||||
Sbjct 553 AGTTATTGCAAAATTGTGGAGTCGCAACGGCGTATTACCTTGGAAATTTCATGTCATGGA 612
Query 539 GAATCATAGCCTTAATCGGCATACTTCCATGCTTGATACAACTTGTTGGATTGTTTTTCG 598
|||| ||||||||||| |||||||||||||||||||||||||||||||| ||||||||||
Sbjct 613 GAATAATAGCCTTAATAGGCATACTTCCATGCTTGATACAACTTGTTGGGTTGTTTTTCG 672
Query 599 TCCCCGAGTCTCCAAGATGGTTGGCAAAAGAAGGTCGTGACGAAGAATGTGAGGTTGTTC 658
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 673 TCCCCGAATCTCCAAGATGGTTGGCAAAAGAAGGTCGTGACGAAGAATGTGAGGTTGTTC 732
Query 659 TTCAGAAATTAAGAGGAGACGAAGCGGATATTGTGAAGGAAACT-AGAGAAATCATGATT 717
|||||||| |||||||||| |||||||||||||||||||||||| | ||||||| |||||
Sbjct 733 TTCAGAAACTAAGAGGAGATGAAGCGGATATTGTGAAGGAAACTCA-AGAAATCTTGATT 791
Query 718 TCTGTTGATGCTTCCGCGAATATCAGCATGCGTAGTCTTTTCAAAAGGAAATATTCTCAT 777
|||||||| ||||| ||||||||||||||||||||||||||||||| ||||||| |||||
Sbjct 792 TCTGTTGAGGCTTCTGCGAATATCAGCATGCGTAGTCTTTTCAAAAAGAAATATACTCAT 851
Query 778 CAACTTACAATCGGTGTAGGTTTGATGCTTCTGCAACAGTTAAGTGGAAGTGCAGGATTA 837
||||||||||| ||| ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 852 CAACTTACAATTGGTATAGGTTTGATGCTTCTGCAACAGTTAAGTGGGAGTGCAGGATTA 911
Query 838 GGTTATTACGTTGGTAGCGTGTTTGATCTTGCCGGATTTCCTTCTCGGATTGGGATGACG 897
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 912 GGTTATTACACTGGTAGCGTATTTGATCTTGCCGGATTTCCTTCTCGGATTGGGATGACG 971
Query 898 GTGTTGTCTATTGTCGTGGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGG 957
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 972 GTGTTGTCTATTGTCGTGGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATGG 1031
Query 958 GGAAGAAGACCGCTTCTTATGG 979
||||||||||||||||||||||
Sbjct 1032 GGAAGAAGACCGCTTCTTATGG 1053
Score = 202 bits (109), Expect = 8e-51
Identities = 113/115 (98%), Gaps = 0/115 (0%)
Strand=Plus/Plus
Query 978 GGCATCGGCATTTGGGTTATGTTTAGGTTGTATCTCTCTTGCATTAGCGTTTGGATTGAA 1037
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1149 GGCATCGGCATTTGGTTTATGTTTAGGTTGTATCTCTCTTGCATTAGCGTTTGGATTGAA 1208
Query 1038 AGGTGTCCCTGGGATTAATGTAAATGTTACTCCCACTTTGGCATTTATAGGAATA 1092
||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 AGGTGTCCCTGGGGTTAATGTAAATGTTACTCCCACTTTGGCATTTATAGGAATA 1263
> AT3G05400.1 | Symbols: | Major facilitator superfamily protein
| chr3:1549586-1554148 FORWARD LENGTH=1711
Length=1711
Score = 1098 bits (594), Expect = 0.0
Identities = 1132/1385 (82%), Gaps = 63/1385 (5%)
Strand=Plus/Plus
Query 24 TATTGAGAAAGGATTATTATTGGTAAATAAGGAAGAGAGTGCAAATACAACTCCACTTCT 83
||| ||||||||||| ||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct 134 TATGGAGAAAGGATTGTTATTGGCAAAAAAGGAAGACAGTGCAAATACAACTCCACTTCT 193
Query 84 TGTCTTCACCACTTTCATCATTGTCTCTGCCTCCTTC-TCTTTCGGCGTTGCCTTAGGGC 142
| ||||| |||| |||||||||||||||||||||||| |||| |||| |||| ||||
Sbjct 194 TATCTTCTCCACCTTCATCATTGTCTCTGCCTCCTTCACCTTT-GGCGCTGCCATAGGTT 252
Query 143 ATACTGCTGGTACAATGGCCTCCATTATTG-AAGATCTT-GATCTTTCTATCACACAATT 200
||||||| | ||||||| ||||||||| || ||| ||| ||||||||| || |||||||
Sbjct 253 ATACTGCAGATACAATGTCCTCCATTA-TGTCAGA-CTTGGATCTTTCTCTCGCACAATT 310
Query 201 TTCTG-TATTTGGTTCGTTGTTGACATTTGGAGGAATGTTGGGTGCAATATTTAGCGCC- 258
||| | | ||||||||||||| ||| |||||||||||| | ||||||||||| ||||||
Sbjct 311 TTC-GCTGTTTGGTTCGTTGTCGACGTTTGGAGGAATGATCGGTGCAATATTCAGCGCCA 369
Query 259 ACGATTGC-AGATTCATTTGGTTGTAAAATGACTTTGTGGATCTCTGAGGTATTCTGCAT 317
| | ||| || | | || ||| ||||||||| |||||| | |||| ||||||||||
Sbjct 370 AAG-CTGCAAG-TGCCTTCGGTCATAAAATGACGTTGTGGGTGGCTGATTTATTCTGCAT 427
Query 318 AACTGGATGGCTTGCAATTGCACTAGCCAAGAATATTATTTGGCTGGACTTGGGACGATT 377
|||||| |||||||||||| ||||||||||| ||||||||||||| ||| |||| |||||
Sbjct 428 AACTGGTTGGCTTGCAATTTCACTAGCCAAGGATATTATTTGGCTTGACATGGGGCGATT 487
Query 378 CTTT-GTAGGAATTGGAGTTGGTCTCCTTAGTTACGTGGTTCCTGTATATATTGCAGAAA 436
||| || |||||||||||||||||| |||| ||||||||||||||||||||||||||||
Sbjct 488 -TTTGGTGGGAATTGGAGTTGGTCTCATTAGCTACGTGGTTCCTGTATATATTGCAGAAA 546
Query 437 TAACTCCCAAA-ACTGTGCGAGGCACTTATACATTTAGTAATCAG-TTGTTGCAAAATTG 494
|||| ||||| || || |||| ||| ||||||||| |||||| || |||||||| ||
Sbjct 547 TAACACCCAAGCAC-GTAAGAGGGGCTTTTACATTTAGCAATCAGCTT-TTGCAAAACTG 604
Query 495 TGGGGTGGCAACCGCGTATTACCTAGGAAATTTCATATCATGGAGAATCAT-AGCCTTAA 553
||| || ||| || |||||| | ||||||||| | |||||||||| | | |||| |||
Sbjct 605 TGGAGTTGCAGTCGTATATTACTTTGGAAATTTCTTGTCATGGAGAA-CTTTAGCCATAA 663
Query 554 TCGGCA-TACTTCCATGCTTG-ATACAACTTGTTGGATTGTTTTTCGTCCCCGAGTCTCC 611
| || | || ||||||| ||| |||||| || |||| ||||| ||| | || ||||||||
Sbjct 664 TAGGTAGTA-TTCCATG-TTGGATACAAGTTATTGGTTTGTTCTTCATACCTGAGTCTCC 721
Query 612 AAGATGGTTGGC-AAAAGAAGGTCGTGACGAAGAATGTGAGGTTGTTCTTCAGAAA-TTA 669
||||||| |||| |||| |||||||||| |||||||||| | |||||||| ||| |||
Sbjct 722 AAGATGGCTGGCGAAAA-AAGGTCGTGATAAAGAATGTGAAGAAGTTCTTCA-AAAGTTA 779
Query 670 AGAGGA-GACGA-AGCGGATATTGTGAAGGAAACTAGAGAAATCATGATTTCTGTTGATG 727
|||||| || | | || |||||||| ||| || | ||||||| |||||| ||||| |
Sbjct 780 AGAGGAAGAAAATA-CG-ATATTGTGCCTGAAGCTTGCGAAATCAAGATTTCAGTTGAAG 837
Query 728 CTTCC--G-------CGAATATCAGCATGCGTAGTCTTTTC-AAAAGGAAATATTCTCAT 777
|||| | ||||||||| ||| |||||||||||| ||||| | |||| |||||
Sbjct 838 CTTCGAAGAAAAATTCGAATATCAACATTCGTAGTCTTTTCGAAAAG-AGATATGCTCAT 896
Query 778 CAACTTACAATCGGTGTAGGTTTGATGCTTCTGCAACAGTTAAGTGGAAGTGCAGGATTA 837
|||||||||||||| | |||||||||||||||||||||||| |||||| ||||||| ||
Sbjct 897 CAACTTACAATCGGCATTGGTTTGATGCTTCTGCAACAGTTATGTGGAACTGCAGGAATA 956
Query 838 GGTTATTACGTTGGTAG-CGTGTTTGATCTTGCCGGATTTCCTTCTCGGATTGGGATGAC 896
||| ||||| | | | | ||| | |||||||| |||||| |||||||||||||||
Sbjct 957 AGTTCTTACGGAAGCACTC-TATTTAAACTTGCCGGGTTTCCTGCTCGGATTGGGATGAT 1015
Query 897 GGTGTTGTCTATTGTCGTGGTACCAAAAGCTATATTGGGTCTGATACTTGTGGAACGATG 956
|||||| ||| || |||| ||||||||| || || ||||||| || || ||||| |||||
Sbjct 1016 GGTGTTATCTCTTATCGTCGTACCAAAATCTTTAATGGGTCTAATCCTCGTGGATCGATG 1075
Query 957 GGGAAGAAGACCGCTTCTTATGGCATCGGCATTTGGGTTATGTTTAGGTTGTATCTCTCT 1016
||||||| | || ||||||||| | || || || ||||| |||||| | |||||| | |
Sbjct 1076 GGGAAGACGCCCACTTCTTATGACTTCAGCGTTGGGGTTGTGTTTAAGCTGTATCACA-T 1134
Query 1017 TG-CATTAGCGTTTGGA-TTGAAAGGTGTCCCTGGGATTAATGTAAATGTTACTCCCACT 1074
|| || ||||||||||| || |||| |||||| |||| | || ||| ||||||| | |
Sbjct 1135 TGGCAGTAGCGTTTGGAGTT-AAAGATGTCCC-GGGAAT--TGGAAAAATTACTCCAATT 1190
Query 1075 TTG-GCATTT-ATAGGAATATTGACATTTGTTATGATGTTCGCGGCTGGATTAGGAGCGC 1132
|| | ||| || ||||||||| | ||| ||||||||||| |||| | ||||||
Sbjct 1191 TTCTG--TTTCATTGGAATATTGTCGTTTACGATGATGTTCGCAATTGGAATGGGAGCGT 1248
Query 1133 TACCATGGATTATAATGTCTGAGATATTTCCGATGGACATGAAAG-TAGTAGCTGGGAGT 1191
||||||||||||||||||||||||||||||| ||||| || |||| || |||||||||||
Sbjct 1249 TACCATGGATTATAATGTCTGAGATATTTCCAATGGATAT-AAAGGTATTAGCTGGGAGT 1307
Query 1192 TTAGTAAGCATAACGAATTGGTTTACTGGTTGGATCGTCAGCTACTG-TTTCAATTTTAT 1250
||||| | |||| | |||||||| ||||||||||||| || ||| || ||||||||||||
Sbjct 1308 TTAGTGACCATAGCAAATTGGTTCACTGGTTGGATCGCCAACTA-TGCTTTCAATTTTAT 1366
Query 1251 GCTTC-TTTGGAGTCCAACCGGAACTTTTATCATATTTGCTACGATATGTGGAGCAACGA 1309
| || ||||||| |||| ||| |||||||| |||| |||| || ||||||||||| |
Sbjct 1367 G-TTGGTTTGGAGCCCAAGCGGGACTTTTATAATATCCGCTATAATCTGTGGAGCAACAA 1425
Query 1310 TTGTCTTCGCATGGTGTTTGGTGCCTGAGACTCGAGGATTAACTTTAGAAGAAATCCAAC 1369
|||| ||| ||||||| |||||||| ||||||||| ||||||| ||||||||||||||||
Sbjct 1426 TTGTATTCACATGGTGCTTGGTGCCGGAGACTCGAAGATTAACGTTAGAAGAAATCCAAC 1485
Query 1370 T-TCG 1373
| |||
Sbjct 1486 TGTCG 1490
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68272741200
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5