BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340702
Length=780
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05345.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 848 0.0
AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 267 2e-70
> AT3G05345.1 | Symbols: | Chaperone DnaJ-domain superfamily protein
| chr3:1522449-1523889 REVERSE LENGTH=777
Length=777
Score = 848 bits (459), Expect = 0.0
Identities = 509/534 (95%), Gaps = 0/534 (0%)
Strand=Plus/Plus
Query 247 GTGAAACAATACCATCCTGATGTAAACAAAGAGGGAAGCAACTCTGATATTATGATCCGT 306
||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 244 GTGAAACAATACCATCCAGATGTAAACAAAGACGGAAGCAACTCTGATATTATGATCCGT 303
Query 307 CGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGA 366
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 CGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGA 363
Query 367 GAATGCTTGGATCCTTTTGACCATCCAGAGTGTGAGGCACTTGACGTGTTTGTGAATGAA 426
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 364 GAATGCTTGGATCCTTTTGACCATCCAGAGTGCGAGGCACTTGACGTGTTTGTGAATGAA 423
Query 427 GTCCTGTGTGTTGGAAAAAGATGTTCATACCCATGCTTTAAAACAGCTTCTCATGTCTTC 486
||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 424 GTCCTATGTGTTGGAAAAAGATGTTCATACCCATGCTTTGAAACAGCTTCTCATGTCTTC 483
Query 487 TCGTGTGATTCATCTGGAACAGCTCGAGCAATGTCCCAAGGGCATGGTGAAGATTACAGT 546
||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| ||
Sbjct 484 TCGTGTGATTCATCTGGGACAGCTCGAGCAATGTCCCAAGGACATGGCGAAGATTACCGT 543
Query 547 GTACAATCTGCAGTTAATCAGTGCCCGAAAAATTGCATACATTATGTCACACCATCACAA 606
||||| ||||||||||||||||| |||| |||||| |||||||||||||||||||||||
Sbjct 544 GTACAGTCTGCAGTTAATCAGTGTCCGAGAAATTGTATACATTATGTCACACCATCACAG 603
Query 607 AGAATTATTCTAGAAGAGTTACTTGACAGCGTTGTGGACAAACCTTATGATTGTTCCGCC 666
|||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 604 AGAATTATTCTAGAAGAGTTACTTGACAGCGTCGTGGACAAACCTTACGATTGTTCCGCA 663
Query 667 GAAGCAGAGTTTCTCTATGGTCTTATTGTCAAAGCTCAATATGAGAACAATCGGTATCAG 726
|||||||| ||||| |||| ||||||||| |||||| ||| |||||||||||||||||||
Sbjct 664 GAAGCAGAATTTCTATATGCTCTTATTGTGAAAGCTAAATTTGAGAACAATCGGTATCAG 723
Query 727 AAGCCAAAGAAGAAACAATCTGAATCTTCAGGAAAACATGTAGACTGGTTATGA 780
|||||||||||||||||| ||||||||||||||||||||||||||||||| |||
Sbjct 724 AAGCCAAAGAAGAAACAACCTGAATCTTCAGGAAAACATGTAGACTGGTTCTGA 777
> AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:1523463-1526166 REVERSE LENGTH=2704
Length=2704
Score = 267 bits (144), Expect = 2e-70
Identities = 190/211 (90%), Gaps = 7/211 (3%)
Strand=Plus/Plus
Query 22 TTGCTTAAACGAATGCTTGGCTCAGGTGGGTTTGATCAAGCGACCTTGACGACTGTGTTA 81
|||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||| |||
Sbjct 546 TTGCTTAAACGAATGCTTGGGTCAGGTGGGTTTGATCATGCGACTTTGACGATTGTTTTA 605
Query 82 TCAGTGTGTGATACGCCAGAGTTCTCTTTGGTGACCACGATGATGATTCACGCTTTAGCA 141
||||||||||||||||||||||||| ||||||||| | | |||||||||||||||||||
Sbjct 606 TCAGTGTGTGATACGCCAGAGTTCTGTTTGGTGACAA--A-GATGATTCACGCTTTAGCA 662
Query 142 ATTATAAGTGGTTATGACAAAGGATGCTTCTTCCGTGGGGAACAAACTGACCACATCTTA 201
||| |||| ||||||||||| ||| || | |||||||||||||||||| |||||||||
Sbjct 663 ATTTTAAGCGGTTATGACAA-GGAAA-TT-T-CCGTGGGGAACAAACTGATCACATCTTA 718
Query 202 TTTCAAATGTGGATGTTCGGTTTCCGGGAGA 232
|||||||||||||||||| ||||| ||||||
Sbjct 719 TTTCAAATGTGGATGTTCAGTTTCTGGGAGA 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 37926780985
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5