BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg340702 Length=780 Score E Sequences producing significant alignments: (Bits) Value AT3G05345.1 | Symbols: | Chaperone DnaJ-domain superfamily pro... 848 0.0 AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 267 2e-70 > AT3G05345.1 | Symbols: | Chaperone DnaJ-domain superfamily protein | chr3:1522449-1523889 REVERSE LENGTH=777 Length=777 Score = 848 bits (459), Expect = 0.0 Identities = 509/534 (95%), Gaps = 0/534 (0%) Strand=Plus/Plus Query 247 GTGAAACAATACCATCCTGATGTAAACAAAGAGGGAAGCAACTCTGATATTATGATCCGT 306 ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||| Sbjct 244 GTGAAACAATACCATCCAGATGTAAACAAAGACGGAAGCAACTCTGATATTATGATCCGT 303 Query 307 CGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGA 366 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 304 CGCATAATCCAGGCATATGAGATGTTAACAAACTATAGCCGGTCAGAGATAATTGAAGGA 363 Query 367 GAATGCTTGGATCCTTTTGACCATCCAGAGTGTGAGGCACTTGACGTGTTTGTGAATGAA 426 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 364 GAATGCTTGGATCCTTTTGACCATCCAGAGTGCGAGGCACTTGACGTGTTTGTGAATGAA 423 Query 427 GTCCTGTGTGTTGGAAAAAGATGTTCATACCCATGCTTTAAAACAGCTTCTCATGTCTTC 486 ||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 424 GTCCTATGTGTTGGAAAAAGATGTTCATACCCATGCTTTGAAACAGCTTCTCATGTCTTC 483 Query 487 TCGTGTGATTCATCTGGAACAGCTCGAGCAATGTCCCAAGGGCATGGTGAAGATTACAGT 546 ||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||||| || Sbjct 484 TCGTGTGATTCATCTGGGACAGCTCGAGCAATGTCCCAAGGACATGGCGAAGATTACCGT 543 Query 547 GTACAATCTGCAGTTAATCAGTGCCCGAAAAATTGCATACATTATGTCACACCATCACAA 606 ||||| ||||||||||||||||| |||| |||||| ||||||||||||||||||||||| Sbjct 544 GTACAGTCTGCAGTTAATCAGTGTCCGAGAAATTGTATACATTATGTCACACCATCACAG 603 Query 607 AGAATTATTCTAGAAGAGTTACTTGACAGCGTTGTGGACAAACCTTATGATTGTTCCGCC 666 |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| Sbjct 604 AGAATTATTCTAGAAGAGTTACTTGACAGCGTCGTGGACAAACCTTACGATTGTTCCGCA 663 Query 667 GAAGCAGAGTTTCTCTATGGTCTTATTGTCAAAGCTCAATATGAGAACAATCGGTATCAG 726 |||||||| ||||| |||| ||||||||| |||||| ||| ||||||||||||||||||| Sbjct 664 GAAGCAGAATTTCTATATGCTCTTATTGTGAAAGCTAAATTTGAGAACAATCGGTATCAG 723 Query 727 AAGCCAAAGAAGAAACAATCTGAATCTTCAGGAAAACATGTAGACTGGTTATGA 780 |||||||||||||||||| ||||||||||||||||||||||||||||||| ||| Sbjct 724 AAGCCAAAGAAGAAACAACCTGAATCTTCAGGAAAACATGTAGACTGGTTCTGA 777 > AT3G05340.1 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr3:1523463-1526166 REVERSE LENGTH=2704 Length=2704 Score = 267 bits (144), Expect = 2e-70 Identities = 190/211 (90%), Gaps = 7/211 (3%) Strand=Plus/Plus Query 22 TTGCTTAAACGAATGCTTGGCTCAGGTGGGTTTGATCAAGCGACCTTGACGACTGTGTTA 81 |||||||||||||||||||| ||||||||||||||||| ||||| ||||||| ||| ||| Sbjct 546 TTGCTTAAACGAATGCTTGGGTCAGGTGGGTTTGATCATGCGACTTTGACGATTGTTTTA 605 Query 82 TCAGTGTGTGATACGCCAGAGTTCTCTTTGGTGACCACGATGATGATTCACGCTTTAGCA 141 ||||||||||||||||||||||||| ||||||||| | | ||||||||||||||||||| Sbjct 606 TCAGTGTGTGATACGCCAGAGTTCTGTTTGGTGACAA--A-GATGATTCACGCTTTAGCA 662 Query 142 ATTATAAGTGGTTATGACAAAGGATGCTTCTTCCGTGGGGAACAAACTGACCACATCTTA 201 ||| |||| ||||||||||| ||| || | |||||||||||||||||| ||||||||| Sbjct 663 ATTTTAAGCGGTTATGACAA-GGAAA-TT-T-CCGTGGGGAACAAACTGATCACATCTTA 718 Query 202 TTTCAAATGTGGATGTTCGGTTTCCGGGAGA 232 |||||||||||||||||| ||||| |||||| Sbjct 719 TTTCAAATGTGGATGTTCAGTTTCTGGGAGA 749 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 37926780985 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5