BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340742
Length=831
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05685.1 | Symbols: | Cystatin/monellin superfamily protein... 217 2e-55
> AT3G05685.1 | Symbols: | Cystatin/monellin superfamily protein
| chr3:1673780-1674908 REVERSE LENGTH=543
Length=543
Score = 217 bits (117), Expect = 2e-55
Identities = 183/214 (86%), Gaps = 8/214 (4%)
Strand=Plus/Plus
Query 622 GGTTTCAATGTGGAGTTTGTGGAAGTGGTGCGAGGTGCATTTACTGCAGGACCTAAA-TC 680
|||||| ||||||||||||||||||||||||||||| |||| | |||||| | || ||
Sbjct 334 GGTTTCGATGTGGAGTTTGTGGAAGTGGTGCGAGGTATATTTTCAGCAGGATC-AAGGTC 392
Query 681 AAAGTCGTACATTACATTTATGGCTAGGGAGAAACCTGATGGGCCTCTTGTCGAGTATCA 740
|||||||| ||| ||||| ||||||||||||||||||||||| |||| ||| ||||||||
Sbjct 393 AAAGTCGTTCATCACATTCATGGCTAGGGAGAAACCTGATGGACCTCCTGTTGAGTATCA 452
Query 741 ATGC-AAGGCTTGGTCTACGTTTGTTCGACACGAGAACTATCCCATCCTCTGTAGACCTG 799
| || |||| ||||| |||| |||||||| || |||||||||||||||||||||||| |
Sbjct 453 A-GCTAAGGTTTGGTGTACGGTTGTTCGAAACCAGAACTATCCCATCCTCTGTAGACGGG 511
Query 800 CTC-CTACCCCAAAGCTCTCAAA-CCAAAACTAG 831
||| | || |||||| ||| || ||||||||||
Sbjct 512 CTCTC-ACAACAAAGC-CTCCAAGCCAAAACTAG 543
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40488722482
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5