BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340760
Length=1053
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05830.2 | Symbols: | Encodes alpha-helical IF (intermediat... 857 0.0
AT5G26770.2 | Symbols: | unknown protein; BEST Arabidopsis tha... 529 2e-149
> AT3G05830.2 | Symbols: | Encodes alpha-helical IF (intermediate
filament)-like protein. | chr3:1736677-1738664 FORWARD LENGTH=1268
Length=1268
Score = 857 bits (464), Expect = 0.0
Identities = 535/570 (94%), Gaps = 2/570 (0%)
Strand=Plus/Plus
Query 317 AGTTTATCAAAGAGTTGGAGGAATTTAGATCAAAGCTTGATGCAACCAAGCAAATAGCAG 376
|||||||||||||||||||||||||||||| |||||||||| |||||||||||| ||||
Sbjct 394 AGTTTATCAAAGAGTTGGAGGAATTTAGATTAAAGCTTGATACAACCAAGCAAACCGCAG 453
Query 377 AGGCAAGTGCTGATTCTGCTCAATCTACACAGATCCAATGCTCAATGCTAAAGAAACAAC 436
||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct 454 AGGCAAGTGCTGATTCTGCTCAATCTACAAAGATCCAATGCTCAATGCTAAAGCAACAAC 513
Query 437 TTGACGACAAAACACGTTCTCTCAGAGAACACGAAGACCGTGTGACTCAGCTCGGTCATC 496
||||||||||||||||||||||||||||||| ||||||||| |||||||||| |||||||
Sbjct 514 TTGACGACAAAACACGTTCTCTCAGAGAACAAGAAGACCGTATGACTCAGCTTGGTCATC 573
Query 497 AGCTTGATGATCTACAGAGAGGTCTGAGCCTGAGAGAGTGCTCAGAAAAGCAGCTCAGAG 556
||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||
Sbjct 574 AGCTTGATGATCTACAGAGAGGTCTGAGCTTGAGAGAGTGCTCAGAAAAGCAGCTTAGAG 633
Query 557 AAGAAGTTAAGAGAATCGAGCGGGAGATAACAGAGTCCATTACGAAAGCTGGG-ATAGAT 615
||||||||| |||||||||||| ||| | || ||| ||||| | ||||| ||| |||| |
Sbjct 634 AAGAAGTTAGGAGAATCGAGCGTGAGGTTACTGAGGCCATTGCAAAAGC-GGGAATAGGT 692
Query 616 GGCATGGACTGCGAGCTGCAGAAACTTCTAGAAGATGTCTCTCCAATGAAATTTGAGAAG 675
||||||||| ||||||| |||||||||||||||||||| ||||||||||||||||||| |
Sbjct 693 GGCATGGACAGCGAGCTCCAGAAACTTCTAGAAGATGTGTCTCCAATGAAATTTGAGAGG 752
Query 676 ATGAATAGGCTAGTTGAAGTAAAAGACGAAGAGATTACAAAACTGAAAGATGAGATAAGG 735
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 753 ATGAATAGGCTAGTTGAAGTAAAAGACGAAGAGATTACAAAACTGAAAGATGAGATAAGG 812
Query 736 TTAATGTCAGGTCACTGGAAACACAAGACTAAGGAACTCGAATCTCAGCTGGAAAAACAG 795
|||||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 813 TTAATGTCAGGTCAATGGAAACATAAGACTAAGGAACTCGAATCTCAGCTGGAGAAACAG 872
Query 796 AGAAGAACTGATCAAGATCTGAAGAAGAAGGTACTGAAACTAGAGTTCTGTCTACAAGAA 855
|||||||||||||||||| |||||||||||||| |||| |||||||||||| ||||||||
Sbjct 873 AGAAGAACTGATCAAGATTTGAAGAAGAAGGTATTGAAGCTAGAGTTCTGTTTACAAGAA 932
Query 856 GCTAGAAGCCAGACTAGAAAGCTGCAGAGG 885
||| |||||||||| |||||||||||||||
Sbjct 933 GCTCGAAGCCAGACAAGAAAGCTGCAGAGG 962
Score = 436 bits (236), Expect = 2e-121
Identities = 267/282 (95%), Gaps = 2/282 (1%)
Strand=Plus/Plus
Query 1 ATGTCTTGTTCTGAAAAAACGACGGTGGATCCACTTCTAAGAGATTTAGATGAGAAGAAA 60
||||||| |||||||||||||||||||||||||||||| |||||||| ||||||||||||
Sbjct 120 ATGTCTTATTCTGAAAAAACGACGGTGGATCCACTTCTGAGAGATTTGGATGAGAAGAAA 179
Query 61 GAGAGTTTCCGGCGAAACGTGGTGTCTTTGGCGGCGGAGCTGAAACAAGTGAGGGGCCGT 120
||||||||||||||||||||||||||| |||| |||||||||| |||||||||||||||
Sbjct 180 GAGAGTTTCCGGCGAAACGTGGTGTCTCTGGCTACGGAGCTGAAGCAAGTGAGGGGCCGT 239
Query 121 TTGGTTAT-TCAAGAACAATCCTTTCTTAAAGAAACCATAATTAGAAAAGAAGCAGAGAA 179
|||||| | |||||||||||| ||||||||||| ||||| | ||||||||||||||||||
Sbjct 240 TTGGTT-TCTCAAGAACAATCTTTTCTTAAAGAGACCATTACTAGAAAAGAAGCAGAGAA 298
Query 180 AAGGGGAAAGAATATGGAAATGGAGATGTGTAAATTGCAGAAGAGATTGGAAGAAAGGAA 239
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 299 AAGGGGAAAGAATATGGAAATGGAGATTTGTAAATTGCAGAAGAGACTGGAAGAAAGGAA 358
Query 240 TTGTCAGCTTGAAGCTTCTGCATCTGCTGCTGATAAGTTTAT 281
||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 TTGTCAGCTTGAAGCTTCTGCATCTGCTGCTGATAAGTTTAT 400
Score = 274 bits (148), Expect = 1e-72
Identities = 162/169 (96%), Gaps = 0/169 (0%)
Strand=Plus/Plus
Query 885 GAAAGGGGAAAGAAGGGATATGGAGATCAAAGAGATAAGAGATCTGATATCGGAGAAACA 944
|||||||||||||||||| |||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1001 GAAAGGGGAAAGAAGGGACATGGAGATCAAAGAGATAAGAGATCTTATATCGGAGAAGCA 1060
Query 945 ACAGCTTAACAATGAGTCTTGGGATAAACAGAAGTTCTGGGACAATTCAGGGTTCAAGAT 1004
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1061 AAACCTTAACAATGAGTCTTGGGATAAACAGAAGTTCTGGGACAATTCAGGGTTCAAGAT 1120
Query 1005 CGTTGTGTCAATGTCTATGTTGATGTTAGTGGTAGTCTCCAAGAGATGA 1053
||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1121 TGTTGTATCAATGTCTATGTTGATGTTAGTGGTAGTCTCCAAGAGATGA 1169
> AT5G26770.2 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT3G05830.1);
Has 35333 Blast hits to 34131 proteins in 2444 species: Archae
- 798; Bacteria - 22429; Metazoa - 974; Fungi - 991; Plants
- 531; Viruses - 0; Other Eukaryotes - 9610 (source: NCBI
BLink). | chr5:9407826-9410018 REVERSE LENGTH=1446
Length=1446
Score = 529 bits (286), Expect = 2e-149
Identities = 591/732 (81%), Gaps = 45/732 (6%)
Strand=Plus/Plus
Query 343 AGATCAAAGCTTGATGCAACCAAGCAAATAGCAGAGGCAAGTGCTGATTCTGCTCAATCT 402
|||||| |||| | | ||| ||| | || ||||| ||||||||| ||||||||||||
Sbjct 584 AGATCACAGCTAGCTTTAACAAAGGACATTGCAGAAACAAGTGCTGCTTCTGCTCAATCC 643
Query 403 ACACAGATCCAATGCTCAATGCTAA-AGAAACAACTTGACGACAAAACACGTTCTCTCAG 461
||||| | ||||||||| |||||| || |||||||||||||||||||||||||||| ||
Sbjct 644 GCACAGCTTCAATGCTCAGTGCTAACAG-AACAACTTGACGACAAAACACGTTCTCTAAG 702
Query 462 AGAACACGAAGACCGTGTGACTCAGCTCGGTCATCAGCTTGATGATCTACAGAGAGGTCT 521
|||||||||||||||||| ||||| |||||||| ||||||||| |||| ||||||| | |
Sbjct 703 AGAACACGAAGACCGTGTAACTCATCTCGGTCACCAGCTTGATAATCTTCAGAGAGATTT 762
Query 522 GA-GCCTGAGAGAGTG--CTCAGAAAAGCAGCTCAGAGAAGAAGTTAAGAGAATCGAGCG 578
|| | | ||||| || |||| |||| ||||| ||||| ||||||| ||||||||||||
Sbjct 763 GAAGACA-AGAGAATGTTCTCA-AAAA-CAGCTGAGAGAGGAAGTTATGAGAATCGAGCG 819
Query 579 GGAGATAACAGA-GTCCATTACGAAAG-CTGGGATAGATGGCATGGACTGCGAGCTGCAG 636
|||||||| || | | || | |||| |||||| | | |||| || || ||||| |||
Sbjct 820 TGAGATAACTGAAG-CTGTTGC-AAAGTCTGGGA-A-A-GGCACAGAATGTGAGCT-CAG 873
Query 637 -AAACTTCTAGAAGATGTCTCTCCAATGAAATTTGAGAAGA-TGAATAGGCTAGTTGAAG 694
|||||||| ||||| || ||||||| ||| ||||||| || |||| | | || ||| |
Sbjct 874 GAAACTTCTTGAAGAGGTTTCTCCAAAGAACTTTGAGA-GAATGAACATGTTA-TTGGCG 931
Query 695 -TAAAAGACGAAGAGATTACAAAACTGAAAGATGA-GAT-AAGGTTAATGTCAGGTCACT 751
||||||||||||||||| |||| | |||||||| | | ||| |||||||||| ||| |
Sbjct 932 GTAAAAGACGAAGAGATTGCAAAGTTAAAAGATGATG-TGAAG-TTAATGTCAGCTCATT 989
Query 752 GGAAACACAAGACTAAGGAACTCGAATCTCAGCTGGAAAAACAGAGAAGAACTGATCAAG 811
|||||| ||| ||||||||||| ||||||||| |||| | ||| |||||| | |||||||
Sbjct 990 GGAAACTCAAAACTAAGGAACTTGAATCTCAGTTGGAGAGACAAAGAAGAGCAGATCAAG 1049
Query 812 A-TCTGAAGAAGAAGGTACTGAAACTAGAGTTCTGTCTACAAGAAGCTAGAAGCCAGACT 870
| | |||||||||||||||||||||||||||| || || ||||||||| | || |||||
Sbjct 1050 AGT-TGAAGAAGAAGGTACTGAAACTAGAGTTTTGCCTGCAAGAAGCTCGTAGTCAGACA 1108
Query 871 AGAAAGCTGCAGAGGAAAGGGGAAAGAAGGGATATGG-AGATCAAAGAGATAAGAGATCT 929
|||||||| |||||| ||||| ||| | || | || | ||||||||| |||| ||||
Sbjct 1109 AGAAAGCTACAGAGGGCGGGGGAGAGACGAGACAAGGCA-ATCAAAGAGCTAAGTGATCA 1167
Query 930 GAT-ATCGGAGAAACAACAGCTT-AAC-AAT-GAGTCTT--GGG-ATAAACAGAAGTTCT 982
||| | | | |||| | ||| || || ||| | || || ||| | ||||| || ||||
Sbjct 1168 GATTA-CTG-GAAA-A-CAG-TTGAATGAATCG-GT-TTCAGGGGAGAAACAAAACTTCT 1220
Query 983 GGGACAATTCAGGGTTCAAGATCGTTGTGTCAATGTCTATGTTGATGTTAGTGGT-AGTC 1041
|||| | |||||||||||||||||||||||||||||| |||||||| ||||| | | ||
Sbjct 1221 GGGATACTTCAGGGTTCAAGATCGTTGTGTCAATGTCGATGTTGATATTAGTTATTA-TC 1279
Query 1042 TCCAAGAGATGA 1053
||||| ||||||
Sbjct 1280 TCCAAAAGATGA 1291
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 51640703116
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5