BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340770
Length=1260
Score E
Sequences producing significant alignments: (Bits) Value
AT3G05940.1 | Symbols: | Protein of unknown function (DUF300) ... 2058 0.0
AT5G26740.1 | Symbols: | Protein of unknown function (DUF300) ... 1190 0.0
> AT3G05940.1 | Symbols: | Protein of unknown function (DUF300)
| chr3:1777364-1780254 REVERSE LENGTH=1858
Length=1858
Score = 2058 bits (1114), Expect = 0.0
Identities = 1219/1269 (96%), Gaps = 9/1269 (1%)
Strand=Plus/Plus
Query 1 ATGGCGGATTTGCTACCCATTTACCTCATTATCGTAGCATTTCTATGCACTGTCGGAGCC 60
|||||||||||| ||||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 362 ATGGCGGATTTGTTACCCATTTACCTCATTATTTTGGCATTTCTATGCACTGTCGGAGCC 421
Query 61 ATTGCTTTGGCTTTGTTTCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTAT 120
|||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 422 ATTGCTTTGGCTTTATTCCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTAT 481
Query 121 CAGAGATATATTGTGCGCATCGTCTTCATGGTCCCGGTCTATGCCTTGATGTCATTCTTG 180
|||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||
Sbjct 482 CAGAGATATATTGTGCGCATTGTCTTCATGGTCCCGGTTTATGCCTTGATGTCATTCTTG 541
Query 181 GCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTATGAAGCA 240
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 542 GCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTACGAAGCA 601
Query 241 TGGGTGATTTATAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGTTCAGTA 300
|||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 602 TGGGTGATATATAATTTTCTATCGCTGTGTTTGGCCTGGGTTGGAGGCCCAGGTTCGGTA 661
Query 301 GTTATAAGTTTAACTGGTCGATCTCTGAAGCCATCGTGGCATCTCATGACATGTTGCTTC 360
|||||||||||||||||||| |||||||||||||| |||||||||||||| |||||| ||
Sbjct 662 GTTATAAGTTTAACTGGTCGCTCTCTGAAGCCATCTTGGCATCTCATGACGTGTTGCATC 721
Query 361 CCTCCACTACCATTAGACGGGCGTTTTATTCGACGGTGCAAGCAAGGTTGTTTGCAATTT 420
|| ||||||||||||||||||||||||||| |||| ||||||||||||||| ||||||||
Sbjct 722 CCACCACTACCATTAGACGGGCGTTTTATTAGACGATGCAAGCAAGGTTGTCTGCAATTT 781
Query 421 GTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAATAC 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 782 GTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAATAC 841
Query 481 AAGGATGGAAATTTCAGCCCTGACCAATCCTATCTCTATCTTACCATCATCTATACAATA 540
|||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 842 AAGGATGGAAATTTTAGCCCTGATCAATCCTATCTCTATCTTACCATCATCTATACAATA 901
Query 541 TCATACACAGTAGCTTTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGCTT 600
|||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 902 TCATACACTGTAGCTCTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGCTT 961
Query 601 CAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTCGTCTTTCTAACCTAT 660
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 962 CAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTTGTCTTTCTAACCTAT 1021
Query 661 TGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGGGATGAAGAAGAA 720
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1022 TGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGGGATGAAGAAGAA 1081
Query 721 GCAGCGCTCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGCTGCTCAT 780
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1082 GCAGCCCTCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGCTGCTCAT 1141
Query 781 TTCTATGCATTTCCGTACAAGGAATATGCAGAGGCCAATGTGGGAGGAGCTCGCAGTTTC 840
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1142 TTCTATGCATTTCCGTACAAGGAATATGCAGAGGCCAATGTTGGAGGAGCTCGCAGTTTC 1201
Query 841 TCAGGAAGTCTGGCACATGCTCTTATGCTAAATGATTTCTACCATGATACTGTTCACCAG 900
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1202 TCAGGAAGTCTGGCACATGCTCTTATGCTAAACGATTTCTACCATGATACTGTTCACCAG 1261
Query 901 TTTGCCCCAACATATCACGATTATGTGCTCTATAATCATAATGATGGTGGTGAGGAAGGG 960
||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1262 TTTGCACCAACATATCACGATTATGTGCTCTATAATCATAATGATGGGGGTGAGGAAGGG 1321
Query 961 ACAAGGAAGTACCGAGCAAGAACATTTGTGCCAACTGGTCAGGAAATGGATGCTGTCAGA 1020
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 1322 ACAAGGAAGTACCGAGCACGAACATTTGTGCCAACTGGTCAGGAAATGGATGCTGTTAGA 1381
Query 1021 AAGAACAAGCACATGTTTGGAAACAAGATAGATGGTGTTTCGGTCTCTAGTCAATCTTCA 1080
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1382 AAGAACAAACACATGTTTGGAAACAAGATAGATGGTGTTTCGGTCTCCAGTCAATCTTCA 1441
Query 1081 GAAACAAGCACACCCAAAACCTCTGGTG-A--T------CCTTCACGCCCTGAGAGCATG 1131
|||||||||||||||||||||||||||| | | ||| |||||||||||||||||
Sbjct 1442 GAAACAAGCACACCCAAAACCTCTGGTGTAACTTATGATCCTGCACGCCCTGAGAGCATG 1501
Query 1132 AAATCTTCCTTGCTGGTAGATGCCTCAGACTCGGTTTCCACAATGTATGACATGTCGCTA 1191
|||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||
Sbjct 1502 AAATCTTCCTTGCTGGTAGATGCCTCGGACTCTGTTTCCACAATGTATGACATGTCGCTC 1561
Query 1192 ATTGACATCGATATATCGAGCTACCCAAGCAAGGTACCTTTTGCAAATATAAGTGGAGGA 1251
|||||||| ||||||||||||||||| ||||||||||||| |||||||||||||||||||
Sbjct 1562 ATTGACATTGATATATCGAGCTACCCTAGCAAGGTACCTTCTGCAAATATAAGTGGAGGA 1621
Query 1252 CCTAAATAG 1260
|||||||||
Sbjct 1622 CCTAAATAG 1630
> AT5G26740.1 | Symbols: | Protein of unknown function (DUF300)
| chr5:9291936-9294608 FORWARD LENGTH=1749
Length=1749
Score = 1190 bits (644), Expect = 0.0
Identities = 1069/1272 (84%), Gaps = 38/1272 (3%)
Strand=Plus/Plus
Query 1 ATGGCGGATTTGCTACCCA-TTTACCTCATTATCGTAGCATTTCTATGCACTGTCGGAGC 59
|||||||||||| || ||| |||| || | ||| || || |||||||| ||||| |||||
Sbjct 280 ATGGCGGATTTGATA-CCATTTTATCTGAATATTGTGGCGTTTCTATGTACTGTTGGAGC 338
Query 60 CATTGCTTTGGCTTTGTTTCATATCTACAAGCACCTATTGAACTATACGGAACCCATTTA 119
||||||||||| | ||||||||||||| ||| || ||||| || |||||||| | |||
Sbjct 339 TATTGCTTTGGCGATATTTCATATCTACAGGCATCTTTTGAATTACACGGAACCAACTTA 398
Query 120 TCAGAGATATATTGTGCGCATCGTCTTCATGGTCCCGGTCTATGCCTTGATGTCATTCTT 179
||||||||||||||| ||||| |||||||||||||||| |||||||| |||||||||||
Sbjct 399 TCAGAGATATATTGTACGCATTATCTTCATGGTCCCGGTTTATGCCTTCATGTCATTCTT 458
Query 180 GGCTCTCGTTTTGCCCAAGAGCTCTATATATTTTAACTCTATCCGTGAAGTTTATGAAGC 239
| |||| || || ||||| ||||| ||||||||| | || || || ||||| ||||||||
Sbjct 459 GTCTCTTGTGTTACCCAAAAGCTCGATATATTTTGATTCCATACGAGAAGTATATGAAGC 518
Query 240 ATGGGTGATTTATAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGTTCAGT 299
|||||| || || ||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 519 ATGGGTTATCTACAATTTTCTATCGCTGTGTTTGGCATGGGTTGGAGGCCCAGGATCAGT 578
Query 300 AGTTATAAGTTTAACTGGTCGATCTCTGAAGCCATCGTGG-CATCTCATGACATGTTGCT 358
||| | ||||| | |||||| ||| | |||||||| ||| | ||| |||||||||||||
Sbjct 579 AGTGCTTAGTTTGAGTGGTCGTTCTTTAAAGCCATCATGGTC-TCTTATGACATGTTGCT 637
Query 359 TCCCTCCACTACCATTAGACGGGCGTTTTATTCGACGGTGCAAGCAAGGTTGTTTGCAAT 418
| || || || || | |||||||| ||||||||||| |||||||| |||||| ||||||
Sbjct 638 TTCCGCCTTTAACACTGGACGGGCGATTTATTCGACGATGCAAGCAGGGTTGTCTGCAAT 697
Query 419 TTGTTATTCTAAAGCCAATCCTAGTTGCTGTCACACTTGTGCTTTATGCAAAAGGGAAAT 478
|||| ||||| ||||| |||||||||||||||||||||||||||||||| |||||||| |
Sbjct 698 TTGTAATTCTGAAGCCTATCCTAGTTGCTGTCACACTTGTGCTTTATGCTAAAGGGAAGT 757
Query 479 ACAAGGATGGAAATTTCAGCCCTGACCAATCCTATCTCTATCTTACCATCATCTATACAA 538
|||||||||||||||| | |||||| ||| | |||||||||||||||||||||||||| |
Sbjct 758 ACAAGGATGGAAATTTTAACCCTGATCAAGCATATCTCTATCTTACCATCATCTATACCA 817
Query 539 TATCATACACAGTAGCTTTGTACGCGCTGGTCCTCTTTTATGTGGCATGCAAAGATCTGC 598
|||| |||||||| ||||||||||| || || || |||||| ||||||||| |||||| |
Sbjct 818 TATCCTACACAGTGGCTTTGTACGCACTTGTGCTGTTTTATATGGCATGCAGAGATCTAC 877
Query 599 TTCAGCCATTCAATCCAGTCCCAAAATTTGTGATTATAAAGTCTGTCGTCTTTCTAACCT 658
||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 878 TTCAGCCATTCAATCCAGTCCCAAAGTTTGTGATCATAAAGTCTGTGGTCTTTCTAACCT 937
Query 659 ATTGGCAGGGTGTTCTAGTTTTCCTTTTTGCTAAATCTGGATTTATAAGG-GATGAAGAA 717
|||||||||||||||| ||||||||| ||| ||||||||||| |||| | | || |||
Sbjct 938 ATTGGCAGGGTGTTCTCGTTTTCCTTGCTGCAAAATCTGGATTCATAAAGAG-TGCAGAG 996
Query 718 GAAGCAGCGC-TCTTCCAAAATTTTATAATATGTGTGGAAATGCTTATTGCTGCAGC-TG 775
| |||||| | | ||| ||||||||||||||||||| || ||||| ||||||||||| ||
Sbjct 997 GCAGCAGCTCATTTTC-AAAATTTTATAATATGTGTCGAGATGCTCATTGCTGCAGCATG 1055
Query 776 CTCATTTCTATGCATTTCCGTACAAGGAATATGCAGAG-GCCAATGTGGGAGGAGCTCGC 834
|||||||||||| ||||| |||||||| ||||| | | |||||||| || ||| || ||
Sbjct 1056 -TCATTTCTATGCTTTTCCATACAAGGAGTATGCTG-GTGCCAATGTTGGTGGATCTGGC 1113
Query 835 AGTTTCTCAGGAAGTCTGG-CACATGCTCTTATGCTAAATGA-TTTCTACCATGATACTG 892
|||||||||||||| || |||||||| | | |||||||| ||| |||||||| ||||
Sbjct 1114 AGTTTCTCAGGAAG-CTTATCACATGCTGTAAAACTAAATGACTTT-TACCATGACACTG 1171
Query 893 TTCACCAGTTTGCCCCAACATATCACGATTATGTGCTCTATAATCAT-AATGATGGTGGT 951
||||||||||||| || || ||||||||||||||||||||||| ||| || |||||||||
Sbjct 1172 TTCACCAGTTTGCTCCTACCTATCACGATTATGTGCTCTATAACCATCAA-GATGGTGGT 1230
Query 952 GAGGAAGGGACAAGGAAGTACCGAGCAAGAACATTTGTGCCAACTGGTCAGGAAATGGAT 1011
|| || ||||||| |||||||||| | ||||| |||||||||||||| || || ||||||
Sbjct 1231 GACGAGGGGACAAAGAAGTACCGATCGAGAACCTTTGTGCCAACTGGCCAAGAGATGGAT 1290
Query 1012 GCTGTCAGAAAGAACAAGCACATGT-T-TGGAAACAAGATAGATGGTGTTTCGGTCTC-- 1067
|| | ||||| ||||| | | ||| | || ||||||||||||||||||||| |||||
Sbjct 1291 GCAATGAGAAAAAACAAAC-C-TGTGTATGCAAACAAGATAGATGGTGTTTCAGTCTCAA 1348
Query 1068 -TAGTCAATCTTCAGAAACAAGCACACCCAAAACCTCT-G-GT-------GATCCTTCAC 1117
||||| ||||||||| ||||| |||| |||| ||| | || |||||| |||
Sbjct 1349 GTAGTCTATCTTCAGAGGCAAGCTCACCTAAAAGCTCCAGCGTAACTTCTGATCCTGCAC 1408
Query 1118 GCCCTGAGAGCA-TGAAATCTTCCTTGCTGGTAGATGCCTCAGACTCGGTTTCCACAATG 1176
|| |||| || ||||||||||||||||||| ||||||||||| || || ||||||
Sbjct 1409 GCTCTGAT-GCTGTGAAATCTTCCTTGCTGGTGGATGCCTCAGATTCTCTTGAAACAATG 1467
Query 1177 TATGACATGTCGCTAATTGACATCGATATATCGAGCTACCCAAGCAAGGTACCTTTTGCA 1236
||||| |||||||| |||||||| ||| |||| || | ||| ||||| || || | ||||
Sbjct 1468 TATGATATGTCGCTCATTGACATTGATCTATCTAGTTTCCCCAGCAATGTCCCATCTGCA 1527
Query 1237 AAT-ATAAGTGG 1247
| | | ||||||
Sbjct 1528 AGTGA-AAGTGG 1538
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61947472530
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5