BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340799
Length=921
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06200.1 | Symbols: | P-loop containing nucleoside triphosp... 1083 0.0
> AT3G06200.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:1877594-1879348
FORWARD LENGTH=1335
Length=1335
Score = 1083 bits (586), Expect = 0.0
Identities = 662/699 (95%), Gaps = 4/699 (1%)
Strand=Plus/Plus
Query 1 ATGACCGATACCCAGATCCC-TGATAACTCTAGTTCGTCCTCAAAT-CAATCTCCCACCA 58
|||||||||||||| ||||| || ||| ||| ||||||| | || |||||||||||||
Sbjct 211 ATGACCGATACCCATATCCCAGGA-AACCCTAATTCGTCC-CCTATCCAATCTCCCACCA 268
Query 59 AACCCGAATCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAA 118
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AACCCGAGTCGCTTCGTTCCCTCGAATTTCAATTGGGTTCTTCTTTCACCGCCGATCCAA 328
Query 119 TTATCCCACCGCCGAATCAGATCGTCATCGTTATCAGTGGTCCGAGCGGAGTTGGCAAAG 178
| ||||| |||||||||||||||||||||||||| || ||||| ||||||||||| ||||
Sbjct 329 TCATCCCGCCGCCGAATCAGATCGTCATCGTTATTAGCGGTCCAAGCGGAGTTGGTAAAG 388
Query 179 ACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTACATTTCGTTGTTACCGCCA 238
|||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||
Sbjct 389 ACGCAGTGATCAACAAGCTTCGTGAGGTTCGTGAAGGTCTTCATTTTGTTGTTACCGCCA 448
Query 239 CTAGCCGTCCGATGCGACCCGGTGAAGTCGATGGTAAAGACTATTTCTTTGTGTCGAGAG 298
|||| |||||||||||||| |||||||| ||||||||||||||||||||||| |||||||
Sbjct 449 CTAGTCGTCCGATGCGACCTGGTGAAGTTGATGGTAAAGACTATTTCTTTGTCTCGAGAG 508
Query 299 ATCAATTTTTATCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAG 358
|||| || || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 509 ATCAGTTCTTGTCAATGGTGGAGAACGAAGAGCTTCTTGAATACGCACTTGTTTATGGAG 568
Query 359 AATACAAAGGGATTCCAAAGAAGCAGATTCAGGAGTTTATGGCTAAAGGGGAAGACATTG 418
|||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 569 AATACAAAGGGATTCCAAAGAAGCAGATTCAGGAATTTATGGCCAAAGGGGAAGACATTG 628
Query 419 TTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCCGCCG 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
Sbjct 629 TTCTTAGAGTTGATATTCAAGGAGCTCAGACGTTAAGGAGGATACTTGGTAACTCTGCTG 688
Query 479 TGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCGATGGTGGAGAGGTTGATTGATCGGA 538
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 689 TGTTTATATTCCTTGTGGCGGAGAGTGAGCTTGCTATGGTGGAGAGGTTGATTGATCGGA 748
Query 539 AGACGGAGAGTCAAGAGGAGCTGCTTGTTAGAGTTGCTACGGCGAGGGAAGAGGTTAGGC 598
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct 749 AGACGGAGAGTCAAGAGGAGTTGCTTGTTAGAGTTGCTACGGCGAGAGAAGAGGTTAGGC 808
Query 599 ATCTTAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTA 658
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 809 ATCTAAAGAACTTTGATTACGTTGTGGTGAATGCCAAAGGGAGGCTTGATGATGCGGTTA 868
Query 659 ATCGCGTGGAATCCATTATCGATGCTGAGAAATCGAAAG 697
| ||||||||||| |||||||||||||||||||| ||||
Sbjct 869 ACCGCGTGGAATCGATTATCGATGCTGAGAAATCTAAAG 907
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45009795712
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5