BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340841
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT3G06520.1 | Symbols: | agenet domain-containing protein | ch... 2080 0.0
> AT3G06520.1 | Symbols: | agenet domain-containing protein |
chr3:2020284-2021955 FORWARD LENGTH=1401
Length=1401
Score = 2080 bits (1126), Expect = 0.0
Identities = 1316/1404 (94%), Gaps = 27/1404 (2%)
Strand=Plus/Plus
Query 1 ATGACGAGCGATCGATTTTGGCGCGGCGGTGACCGCGTTGAGGTGGAACGACTTGTTTCC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGACGAGCGATCGATTTTGGCGCGGCGGTGACCGCGTTGAGGTGGAACGACTAGTTTCT 60
Query 61 GGCGCGACGGCGTATTTTCCGGCGACTGTGGTTAGCGCGCCTTCGGTGAGAAAGAAACTC 120
||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||
Sbjct 61 GGCGCGACGGCATATTTTCCGGCGAGTGTTGTTAGCGCGCCTTCGGTGAGAAAGAAACTC 120
Query 121 GTTTGGGTGGAGCATGAATCCCTAACTGTTGGAGGTTCCGTTTCCATACGTATGAAGGAG 180
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 121 GTTTGGGTGGAGCATGAATCCCTAACTGTTGGAGGTTCCGTTTCCGTACGTATGAAGGAG 180
Query 181 TACGTTATTCCCAAGCGCCTCCGTCCATCTCCGCCGCGTGAGCTCAACAGACGGTTCAAA 240
||||| | ||||| |||||||||||||||||| |||||||| ||||||||||||||||||
Sbjct 181 TACGTCACTCCCACGCGCCTCCGTCCATCTCCACCGCGTGAACTCAACAGACGGTTCAAA 240
Query 241 GTTGACGATGAGGTCGAGGTCTTCAGAGATAGCGAAGGTTGCTGGGTTAGAGGCAATGTT 300
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 GCTGACGATGAGGTCGATGTCTTCAGAGATAGCGAAGGTTGCTGGGTTAGAGGCAATGTT 300
Query 301 ACGACAGTACTTGAAGAGTCAAGGTACATTGTGGAGTTTAAAGGGGGAAATCGTCCAGAA 360
||||| ||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct 301 ACGACCGTACTTGAAGATTCAAGGTACATTGTGGAGTTTAAAGGGGAAAATCGTCCAGAA 360
Query 361 ATAGAGGTTGATCAGTTCGATTTGAGGCTTCATCGTGAATGGCAAGATGGTGCGTGGGTT 420
|||||||||||||||||| |||||||||||||||||||||||| |||||||| |||||||
Sbjct 361 ATAGAGGTTGATCAGTTCAATTTGAGGCTTCATCGTGAATGGCTAGATGGTGGGTGGGTT 420
Query 421 CCTTCTCTTCTCCAACAGAGCAATTTCTTGGAATCGAAAGCCCAAAGTATTAAACTGAAG 480
|||||||||||||||||||||||||||| |||||||| ||||||||| ||||||||||||
Sbjct 421 CCTTCTCTTCTCCAACAGAGCAATTTCTCGGAATCGACAGCCCAAAGAATTAAACTGAAG 480
Query 481 ATAAAAATCAAGAGAAGAGATCAATATGAGAAGGGAGCTCTTGTGGAAGTCAGAAGTGAA 540
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 481 ATAAAAATCAAGAGAAGAGATCAATATGAGAAGGGAGCTCTTGTCGAAGTCAGAAGTGAA 540
Query 541 GAAAAAGCTTACAAGGGTTCTTGGTATTGTGCACGTATACTTTGTTTATTAGGTGATGAT 600
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 541 GAAAAAGCTTACAAGGGTTCTTGGTATTGTGCTCGTATACTTTGTTTATTAGGTGATGAT 600
Query 601 AAGTACATTGTTGAACACTTGAAATTTAGTAGAGATGATGGTGAGTCGATCCCTCTGCGA 660
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 601 AAGTACATTGTTGAACACTTGAAATTTAGTAGAGATGATGGTGAGTCGATCCCTCTGAGA 660
Query 661 GATGTGGTAGAAGCCAATAACATGAGACCAGTTCCTCCTTCAGAACT-TCCGCCTGTTGT 719
||||||||||||||||| |||| ||||||||||||||||||||||| || |||||||||
Sbjct 661 GATGTGGTAGAAGCCAAGGACATAAGACCAGTTCCTCCTTCAGAACTCTC-GCCTGTTGT 719
Query 720 GTGCTATGAACCAGGGGTTATAGTTGATGCTTGGTTCAACAAGCGGTGGTGGATCGGTAG 779
|||||||||||||||||||||||||||||||||||||||||| |||||||||| | ||||
Sbjct 720 GTGCTATGAACCAGGGGTTATAGTTGATGCTTGGTTCAACAAACGGTGGTGGACCAGTAG 779
Query 780 GGTTTCCAAAGTCCTAGGAGGAGGTTCTAA---GTATTCAGTTTTTATCATCTCAACAGG 836
|||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||
Sbjct 780 GGTTTCCAAAGTCCTAGGAGGAGGTTCTAATAAGTATTCAGTTTTTATCATCTCAACTGG 839
Query 837 TGAAGAACCGACAATCCTAAATTTCAACTTAAGGCCCCACAAAGATTGGATCAATGGACA 896
||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 840 TGAAGAAACGACAATCTTAAATTTCAACTTAAGGCCCCACAAAGATTGGATCAATGGACA 899
Query 897 ATGGGTTAATCCTTCCAAGGAA--GA---ATG--C--------T---ACAAACCTCCATT 938
|||||| | ||||||||||| | || ||| | | |||||||||||||
Sbjct 900 ATGGGTCATTCCTTCCAAGGTATTGACTGATGTGCCGGAAGAATGTTACAAACCTCCATT 959
Query 939 GAAGAAGCTGAAATCTTGTGAGAGAGCAGAGAAGGTATTTAACAATGGAATG-ATGGTGG 997
|||||||||||||||||||||||||||||||||||| ||||||||||||||| | |||||
Sbjct 960 GAAGAAGCTGAAATCTTGTGAGAGAGCAGAGAAGGTGTTTAACAATGGAATGGA-GGTGG 1018
Query 998 AAGTTAGAAGCGACGAACGAGGTTACGAAGGCTCATGGTTCTCTGCGAAGATCGTAAGTT 1057
|||||||||||||||||| ||||||||||| ||||||||||||||| |||||||||||||
Sbjct 1019 AAGTTAGAAGCGACGAACCAGGTTACGAAGCCTCATGGTTCTCTGCAAAGATCGTAAGTT 1078
Query 1058 ACTTAGGGGGAAA-CAGATACACAGTGGAGTATCAAACACTGAAAACAGATGATGAAGGA 1116
|||| ||| |||| ||||||||||||||||||||||||||| |||||||| |||||| ||
Sbjct 1079 ACTT-GGGCGAAAACAGATACACAGTGGAGTATCAAACACTAAAAACAGACGATGAAAGA 1137
Query 1117 GAGTTGTTGAAGGAAGAAGCAAGAGGTTCAGATATAAGACCTATTCCTCCTCCACTGATT 1176
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1138 GAGTTGTTGAAGGAAGAAGCAAGAGGTTCAGATATAAGACCTCCTCCTCCTCCACTGATT 1197
Query 1177 CCAACGGAGTATCGATATGAATCGTGTGAAGATGTGGATGCTTGGTACAATGAAGGATGG 1236
|||| || |||||||||||||| || |||| ||||||||||||||||||||||||||||
Sbjct 1198 CCAAAGGGGTATCGATATGAATTGTATGAACTTGTGGATGCTTGGTACAATGAAGGATGG 1257
Query 1237 TGGTCTGGTCGAGTATATACGATAAACAACAACTACACGAGATATGGTGTCTACTTCAAA 1296
||||||||||||||||||| ||||||||||||| | ||||||||||||||||||||| ||
Sbjct 1258 TGGTCTGGTCGAGTATATAAGATAAACAACAACAAAACGAGATATGGTGTCTACTTCCAA 1317
Query 1297 ACGACTGATGAGAGATTGGAGTTTGCTTACAATCATCTTAGGCCTTGCCAAGTGTGGAGA 1356
|||||||||||||| |||||||||||||||||| | ||||||||||||||||||||||||
Sbjct 1318 ACGACTGATGAGAGTTTGGAGTTTGCTTACAATGACCTTAGGCCTTGCCAAGTGTGGAGA 1377
Query 1357 AACGGAAAATGGAGTCGTGCATAA 1380
||||||||||||||||||| ||||
Sbjct 1378 AACGGAAAATGGAGTCGTGTATAA 1401
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5