BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340860
Length=981
Score E
Sequences producing significant alignments: (Bits) Value
AT3G36659.1 | Symbols: | Plant invertase/pectin methylesterase... 664 0.0
> AT3G36659.1 | Symbols: | Plant invertase/pectin methylesterase
inhibitor superfamily protein | chr3:2100189-2100983 FORWARD
LENGTH=795
Length=795
Score = 664 bits (359), Expect = 0.0
Identities = 406/429 (95%), Gaps = 2/429 (0%)
Strand=Plus/Plus
Query 352 AACCCGCCATTGTTATCTCCGGAGATCAAAACCATTTGCGGCAAAACCGATAACCCTCCG 411
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 364 AACCCGCCATTGTTATCTCCGGAGATCAAAACCATTTGCGGCAAAACCGATAACCCTCCG 423
Query 412 TTATGCAAATCTTCCGTTAGTCCTCTGTTAACGCCTCAACTGAAACCAGACACTTCCTCC 471
|||||| ||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 424 TTATGCGAATCTTCCGTTAGTCCTCTCTTAACGCCTCAACTGAAACCAAACACTTCCTCC 483
Query 472 GTCCTCATTCTCGCGATTCAAGCTTCCATTAACGCGACCAAGGCGGCGATGGCCACCGTG 531
|||||||||||||| ||||||||||| || | ||||||||||||||| ||||||| |||
Sbjct 484 GTCCTCATTCTCGCTATTCAAGCTTCGATCACCGCGACCAAGGCGGCCATGGCCATCGTC 543
Query 532 GAAAAAG-CAGGCGCCTCCGATTGTCAGGAGTTGTACGATGACGCCGTTGTGAATTTGGA 590
||||||| | | ||||||||||||||||||||| || ||||| || ||||||||||||||
Sbjct 544 GAAAAAGTC-GACGCCTCCGATTGTCAGGAGTTATATGATGATGCAGTTGTGAATTTGGA 602
Query 591 AGACGCGGTTAACGCCGTTAAGTCACGTGACATTGCCACCGTTAACACAAACTTGAGCGC 650
||| || ||||||||||| |||||| ||||||||||||||||||||||||||||||||||
Sbjct 603 AGATGCAGTTAACGCCGTCAAGTCAAGTGACATTGCCACCGTTAACACAAACTTGAGCGC 662
Query 651 AGCGATGACAGATTACAGCACGTGTAACGACGGTTTTGAAGAAGCGGGAGAGCCTAACCC 710
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 663 AGCGATGACAGATTACAGCACGTGTAACGACGGTTTTGAAGAATCGGGAGAGCCTAACCC 722
Query 711 GTTGGCTGACGTGGCCGATAAGCTTACGAAGATGGTTAGTAACTGTCTCGCCATCTCTAC 770
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 723 GTTGGCTTACGTGGCCGATAAGCTTACGAAGATGGTTAGTAACTGTCTCGCCATCTCTAC 782
Query 771 GTTGATCAA 779
|||||||||
Sbjct 783 GTTGATCAA 791
Score = 326 bits (176), Expect = 3e-88
Identities = 299/355 (84%), Gaps = 22/355 (6%)
Strand=Plus/Plus
Query 1 ATGGAG-TCGAATAAAACCTTTTGGATCATCGTGATCTTCACGGTTTCTATTTTGGTCAC 59
|||||| || || ||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGGAGTTC-AACAAAACCTATCGGATCATCGTGATCTTCACGGTTTCTATTTTGGTCAC 59
Query 60 GATCTCTACGCCTGTAGAATCCAAATGTGCACCACCTTCCGAATCAGAGTCTCCATCTCC 119
|||||||||| ||||| || | ||| | |||||| ||||||| | |
Sbjct 60 CATCTCTACGCATGTAG------AA--T---CCA------G-ATCAGATTCTCCATTTTC 101
Query 120 GGCACCTGCTCCGGGACAAGAAGTTATGAAACCGATCACTAGTCCGGCAAATTCTCCGGC 179
| |||| ||||||| || |||||||||||||| ||| ||||||| ||||||||||||||
Sbjct 102 GACACCAGCTCCGGCACCGGAAGTTATGAAACCTATCGCTAGTCCTGCAAATTCTCCGGC 161
Query 180 GGAGTTAGATACATACTCTCCCGCGGCGTCACCAGAAGCTCCCGCCGATTCAATTTCCCC 239
|||| || ||||| ||||||||| ||||| ||||||||||| || |||||| |||||||
Sbjct 162 GGAGATATATACAGACTCTCCCGTTGCGTCTCCAGAAGCTCCAGCAGATTCATTTTCCCC 221
Query 240 AACGAATGCTCCGG-CGGAGACAGATATCGACTCTCCCGCAGCGTCACCAGAGGCTCCTG 298
|| ||| |||||| | |||| |||||| ||||||||||||||||||||||||||||||
Sbjct 222 AAAAAATCCTCCGGTC-GAGATAGATATATACTCTCCCGCAGCGTCACCAGAGGCTCCTG 280
Query 299 TCGCGTCACCAGAAGCTCCCGCCGAGTCTTCCTCTGCTGCACCATCTGGAATCAA 353
|||| |||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 281 TCGCATCACCAGAAGCTCCTGCGGAGTCTTCCTCTGCTGCACCATCTGGAATCAA 335
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 48023844532
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5