BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340891
Length=939
Score E
Sequences producing significant alignments: (Bits) Value
AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family ... 616 2e-175
AT3G09300.1 | Symbols: ORP3B | OSBP(oxysterol binding protein)-... 409 3e-113
AT1G02730.1 | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthas... 403 1e-111
> AT5G02100.1 | Symbols: UNE18, ORP3A | Oxysterol-binding family
protein | chr5:413520-416225 FORWARD LENGTH=1690
Length=1690
Score = 616 bits (333), Expect = 2e-175
Identities = 381/404 (94%), Gaps = 3/404 (1%)
Strand=Plus/Plus
Query 530 AAGATGAACGTGATGGTTACTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACAT 589
|||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 307 AAGAGGAACGTGATGGCTATTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACAT 366
Query 590 CTATGGTGACTCTTCCTGTGATCATTTTTGAACCTATGACAATGTTGCAGAAAATGGCTG 649
||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 367 CTATGGTTACTCTTCCTGTGATCATTTTTGAACCCATGACAATGTTGCAGAAAATGGCTG 426
Query 650 AGTTGATGGAATACTCGCATCTGGTGGACATGGCTGACAAAACTGAAGATCCTTACATGA 709
|||||||||||||||| || || | |||||||||||||||||||||||||||||||||
Sbjct 427 AGTTGATGGAATACTCATATTTGCTAGACATGGCTGACAAAACTGAAGATCCTTACATGC 486
Query 710 GTATGGTATATGCATCATCATGGGCTATCTCTGTGTATTATGCTTACCAGCGTACCTGGA 769
|||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||
Sbjct 487 GTATGGTATATGCATCATCATGGGCTATATCTGTGTATTACGCCTACCAGCGTACCTGGA 546
Query 770 AGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGGGATCAATT 829
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 547 AGCCGTTCAATCCAATTCTCGGTGAGACTTATGAGATGACTAATCATAATGGGATCAATT 606
Query 830 TTATAGCTGATCTGCAGGTTTGCCATCACCCACCAATGAGTGCTGGTCACGCAAAAAACG 889
|||||||||| ||||| ||||||||||||||||||||||||||||| || ||||||
Sbjct 607 TTATAGCTGA---ACAGGTCTGCCATCACCCACCAATGAGTGCTGGTCATGCTGAAAACG 663
Query 890 AGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTC 933
||||||||||||||||||||||||||||||||||||||||||||
Sbjct 664 AGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATTC 707
> AT3G09300.1 | Symbols: ORP3B | OSBP(oxysterol binding protein)-related
protein 3B | chr3:2857847-2860668 FORWARD LENGTH=1804
Length=1804
Score = 409 bits (221), Expect = 3e-113
Identities = 345/405 (85%), Gaps = 7/405 (2%)
Strand=Plus/Plus
Query 530 AAGATGAACGTGATGGTTACTGGAAGATGATGCAGAAGTATATAGGGTCTGATGTTACAT 589
|||| || || ||||| || |||||||||||||||||||| ||||| |||||||||||||
Sbjct 424 AAGAGGATCGAGATGGCTATTGGAAGATGATGCAGAAGTACATAGGATCTGATGTTACAT 483
Query 590 CTATGGTGACTCTTCCTGTGATCATTTTTGAACCTATGACAATG-TTGCAGAAAATGGCT 648
| |||||||| ||||||||||| ||||||||||| ||||||||| || |||||||||||
Sbjct 484 CAATGGTGACCCTTCCTGTGATTATTTTTGAACCAATGACAATGCTT-CAGAAAATGGCG 542
Query 649 GAGTTGATGGAATACTCGCATCTGGTGGACATGGCTGACAAAACTGAAGATCCTTACATG 708
|||||||||||||||||||||||| | |||||||| |||||||| || || ||||| ||
Sbjct 543 GAGTTGATGGAATACTCGCATCTGCTAGACATGGCAGACAAAACCGAGGACCCTTATTTG 602
Query 709 AGTATGGTATATGCATCATCATGGGCTATCTCTGTGTATTATGCTTACCAGCGTACCTGG 768
| ||||| ||||||||||| |||||||| || ||||||||||||| ||| |||||||||
Sbjct 603 CGCATGGTGTATGCATCATCGTGGGCTATATCCGTGTATTATGCTTTCCAACGTACCTGG 662
Query 769 AAGCCGTTCAATCCAATTCTCGGTGAGACTTACGAGATGACTAATCATAATGG-GATCAA 827
|| || ||||||||||| || ||||||||||| |||||| ||||| | ||||| | | ||
Sbjct 663 AAACCATTCAATCCAATCCTTGGTGAGACTTATGAGATGGCTAATTACAATGGTG-TTAA 721
Query 828 TTTTATAGCTGATCTGCAGGTTTGCCATCACCCACCAATGAGTGCTGGTCACGCAAAAAA 887
|| ||| |||| ||||| |||||||||||||||||||||||||||| || ||||
Sbjct 722 CTTCATATCTGA---ACAGGTCAGCCATCACCCACCAATGAGTGCTGGTCATGCTGAAAA 778
Query 888 CGAGCATTTCGCTTACGATTGCACTTCAAAACTGAAAACGAAATT 932
|||||||| | || ||||| ||||||||||||||||| |||||
Sbjct 779 TGAGCATTTTACGTATGATTGTACTTCAAAACTGAAAACAAAATT 823
> AT1G02730.1 | Symbols: ATCSLD5, CSLD5, SOS6 | cellulose synthase-like
D5 | chr1:594573-598657 REVERSE LENGTH=3854
Length=3854
Score = 403 bits (218), Expect = 1e-111
Identities = 277/302 (92%), Gaps = 17/302 (6%)
Strand=Plus/Plus
Query 251 AGAATACAACGAAGAAGAGAATGATGATGGAGATATTGAATCTCTACTTCTCCCAAAGAG 310
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 2536 AGAATACAACGAAGAAGAGAATGATGATGGAGATATTGAATCTCTGCTTCTCCCAAAGAG 2595
Query 311 ATTTGGTAA--CAAA------C--T-CTT---T--C-GTTGCTGAATACCAAGGGAGACT 353
||||||||| |||| | | ||| | | |||||||||||||||||||||||
Sbjct 2596 ATTTGGTAACTCAAACTCTTTCGTTGCTTCAATCCCAGTTGCTGAATACCAAGGGAGACT 2655
Query 354 CTTACAAGACTTGCAAGGCAAAGGCAAGAACAGTAGAACAGCTGGCTCACTTGCTGTCCC 413
| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2656 CATACAAGACTTGCAAGGCAAAGGCAAGAACAGTAGACCAGCTGGCTCACTTGCTGTCCC 2715
Query 414 ACGTGAACCGCTTGATGCAACCACTGTAGCTGAAGCAATCAGTGTGATATCTTGCTTCTA 473
||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2716 ACGTGAACCACTTGATGCAGCCACTGTAGCTGAAGCAATCAGTGTGATATCTTGCTTCTA 2775
Query 474 CGAGGATAAAACTGAATGGGGCAAAAGAGTTGGATGGATCTATGGATCAGTGACTGAAGA 533
||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 2776 TGAGGACAAAACTGAATGGGGTAAAAGAGTTGGATGGATCTATGGATCAGTGACTGAAGA 2835
Query 534 TG 535
||
Sbjct 2836 TG 2837
Score = 381 bits (206), Expect = 6e-105
Identities = 236/251 (94%), Gaps = 0/251 (0%)
Strand=Plus/Plus
Query 1 ATGTTCGTCTTGCTTGATCGTGGAGTTGATAGAATCTGCTATGTTCAGTTCCCTCAGAGG 60
|||| | || ||||||||||||| | |||||||||||||||||||||||||||||||||
Sbjct 2213 ATGTGCTTCATGCTTGATCGTGGTGGCGATAGAATCTGCTATGTTCAGTTCCCTCAGAGG 2272
Query 61 TTTGAAGTTATTGACCCAAATGATCGTTATGCAAACCACAACACTGTCTTCTTTGATGTT 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2273 TTTGAAGGTATTGACCCAAATGATCGTTATGCAAACCACAACACTGTCTTCTTTGATGTT 2332
Query 121 AGTATGAGAGCTTTGGATGCACTTCAAGGTCCAATGTATGTGGGAACTGGCTGTATCTTC 180
||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 2333 AGTATGAGAGCTTTGGATGGACTTCAAGGTCCAATGTATGTGGGAACTGGCTGCATCTTT 2392
Query 181 CGAAGAACAGCTCTCTACGGGTTTAGCCCGCCGAGAGCAACTGAACATCATGGCTGGCTT 240
|| ||||||||||| || || ||||||||||| |||||||||||||||||||||||||||
Sbjct 2393 CGGAGAACAGCTCTTTATGGATTTAGCCCGCCAAGAGCAACTGAACATCATGGCTGGCTT 2452
Query 241 GGAAGAAGAAA 251
|||||||||||
Sbjct 2453 GGAAGAAGAAA 2463
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45914010358
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5