BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340899
Length=1245
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07070.1 | Symbols: | Protein kinase superfamily protein | ... 2067 0.0
AT3G20530.1 | Symbols: | Protein kinase superfamily protein | ... 233 3e-60
> AT3G07070.1 | Symbols: | Protein kinase superfamily protein
| chr3:2237958-2240074 FORWARD LENGTH=1649
Length=1649
Score = 2067 bits (1119), Expect = 0.0
Identities = 1203/1245 (97%), Gaps = 0/1245 (0%)
Strand=Plus/Plus
Query 1 ATGAATTGCTTTTCATGTTTTTATTTCCATGAAAAGAAAAAGGTTCCGAGAGATTCAGAT 60
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 405 ATGAATTGCTTTTCATGTTTTTATTTCCATGAAAAGAAAAAGGTTCCAAGAGATTCAGAC 464
Query 61 AACAGCTACCGGAGAAATGGCGAGTTGACCGGTAGAGACAACAACAAAACACACCCTGAG 120
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 465 AACAGCTACCGGAGAAATGGGGAGGTGACCGGTAGAGACAACAACAAAACACACCCTGAG 524
Query 121 AATCCAAAGACTGTAAATGAGCAGAACAAGAACAATGATGAAGACAAAGAAGTGACAAAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 525 AATCCAAAGACTGTAAATGAGCAGAACAAGAACAATGATGAAGACAAAGAAGTGACAAAC 584
Query 181 AACATCGCTGCGCAAACATTCACCTTCAGGGAGCTAGCTACTGCAACCAAGAATTTCAGA 240
||||| ||||| |||||||||| |||||||||||||||||||||||| ||||||||||||
Sbjct 585 AACATTGCTGCTCAAACATTCAGCTTCAGGGAGCTAGCTACTGCAACTAAGAATTTCAGA 644
Query 241 CAAGAATGTCTCATCGGTGAAGGCGGGTTTGGAAGGGTTTACAAGGGCAAACTTGAGAAA 300
||||||||||| |||||||||||||| ||||||||||||||||| |||||||| ||||||
Sbjct 645 CAAGAATGTCTGATCGGTGAAGGCGGCTTTGGAAGGGTTTACAAAGGCAAACTCGAGAAA 704
Query 301 ACCGGCATGATTGTTGCAGTGAAGCAATTAGATAGAAATGGATTGCAAGGGAACAAAGAG 360
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 ACCGGCATGATTGTGGCAGTGAAGCAATTAGATAGAAATGGATTGCAAGGGAACAAAGAG 764
Query 361 TTCATCGTTGAGGTCTTGATGTTAAGTCTATTGCATCACAAGCATCTTGTGAATCTCATT 420
||||| || |||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 765 TTCATAGTAGAGGTCTTGATGTTAAGTCTTTTGCATCACAAGCATCTCGTGAATCTCATT 824
Query 421 GGGTATTGTGCTGATGGAGATCAGAGACTTCTAGTCTATGAGTACATGCCTCGCGGCTCA 480
|||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |||
Sbjct 825 GGGTATTGTGCTGATGGAGATCAGAGACTTCTCGTCTATGAGTACATGTCTCGCGGTTCA 884
Query 481 CTCGAAGATCATCTCCTCGATCTAACACCGGACCAAATACCATTGGATTGGGACACGAGG 540
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 885 CTCGAAGATCATCTCCTCGATCTAACACCGGACCAAATACCGTTGGATTGGGACACAAGG 944
Query 541 ATTAGAATCGCTCTAGGAGCCGCAAAGGGTCTTGAATACTTGCATGACAAGGCAAATCCT 600
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 945 ATTAGAATCGCTCTAGGAGCCGCAATGGGTCTTGAATACTTGCATGACAAGGCAAATCCT 1004
Query 601 CCAGTGATCTACAGAGATCTCAAGGCAGCTAATATCCTTCTAGACAGTGAATTCAACGCC 660
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 1005 CCAGTGATCTACAGAGATCTCAAGGCAGCTAATATCCTTCTAGACGGTGAATTCAATGCC 1064
Query 661 AAGTTATCCGATTTTGGTCTGGCAAAGCTAGGCCCTGTCGGGGACAAACAACATGTGTCT 720
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1065 AAGTTATCCGATTTCGGTCTGGCAAAGCTAGGCCCTGTCGGGGACAAACAACATGTGTCT 1124
Query 721 TCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTATCAGAGAACCGGTCAGTTA 780
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1125 TCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTATCAGAGAACCGGTCAGTTA 1184
Query 781 ACTACTAAATCCGATGTTTATAGCTTCGGAGTTGTATTGTTGGAGTTGATAACTGGACGA 840
||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1185 ACTACAAAATCCGATGTTTATAGCTTCGGAGTTGTGTTGTTGGAGTTGATAACTGGACGA 1244
Query 841 AGAGTTATTGACACTACCAGACCCAAACATGAACAGAATCTAGTAACTTGGGCACAACCG 900
||||||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||
Sbjct 1245 AGAGTTATTGATACTACCAGACCCAAAGATGAACAGAATCTAGTAACTTGGGCTCAACCG 1304
Query 901 GTGTTCAAAGAACCGAGTAGATTCCCGGAGTTGGCGGATCCGAGTCTGGAGGGAGTGTTC 960
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1305 GTGTTCAAAGAACCGAGTAGATTCCCAGAGTTAGCGGATCCGAGTCTGGAGGGAGTGTTC 1364
Query 961 CCGGAGAAAGCTCTGAATCAAGCAGTGGCAGTCGCAGCAATGTGTTTACAAGAAGAGGCA 1020
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 1365 CCGGAGAAAGCTCTGAATCAAGCGGTGGCAGTGGCAGCAATGTGTTTACAAGAAGAGGCA 1424
Query 1021 ACGGTACGGCCACTGATGAGCGACGTGGTAACCGCTCTAGGTTTCTTAGGAACCGCTCCT 1080
|||||||||||||| ||||| ||||| ||||||||||| |||||||||||||||||||||
Sbjct 1425 ACGGTACGGCCACTCATGAGTGACGTTGTAACCGCTCTCGGTTTCTTAGGAACCGCTCCT 1484
Query 1081 GACGGCTCTATCTCTGTTCCACACTACGATGATCCTCCTCAGCCGTCGGATGAAACGTCT 1140
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1485 GACGGCTCAATCTCTGTTCCACACTACGATGATCCTCCTCAGCCGTCGGATGAAACGTCC 1544
Query 1141 GTTGAGGATTCAGTGGCAGCGGAAGAACGGGAAAGAGCCGTGGCTGAGGCAATGGAGTGG 1200
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1545 GTGGAGGATTCAGTGGCAGCGGAAGAACGGGAAAGAGCCGTGGCTGAGGCAATGGAGTGG 1604
Query 1201 GGAGTTGCTTCAAGAGCACATTCCCGGAACCCAAGTGCTTCTTGA 1245
|||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1605 GGAGTTGCTTCAAGAGCACATTCCCGGAACCCAAGTGCTTCTTGA 1649
> AT3G20530.1 | Symbols: | Protein kinase superfamily protein
| chr3:7166047-7167929 FORWARD LENGTH=1555
Length=1555
Score = 233 bits (126), Expect = 3e-60
Identities = 593/807 (73%), Gaps = 77/807 (10%)
Strand=Plus/Plus
Query 254 TCGGTGAAGGCGGGTTTGGAAGGGTTTACAA-GGGCAAACTTGAGAAAACC-GG--CATG 309
||||||||||||||||||||||||||||||| ||||| | | ||||| || || || |
Sbjct 534 TCGGTGAAGGCGGGTTTGGAAGGGTTTACAAAGGGCAGA-T--AGAAACCCCGGAACAAG 590
Query 310 ATTGTTGCAGTGAAGCAATTAGATAGAAATGGATTGC-AAGGGAACAAAGAGTT-CATCG 367
||||||| || ||||| |||| || ||||| || | ||||||||| |||||| | | |
Sbjct 591 -TTGTTGCGGTTAAGCAGCTAGACAGGAATGG-TTACCAAGGGAACAGAGAGTTTCTT-G 647
Query 368 TTGAGGTCTTGATGTTAAGTCTATTGCATCA-CAAGCATCTTGTGAATCTCATTGGGTAT 426
| || ||| ||||||| ||||| || ||||| ||| | ||||| ||| | | || |||
Sbjct 648 TGGAAGTCATGATGTTGAGTCTCTTACATCATCAAA-ACCTTGTCAATTTGGTCGGATAT 706
Query 427 TGTGCTGATGGAGATCAGA-G-ACTTCTAGTCTATGAGTACATGCCTCGCGGCTCACTCG 484
|| || || || ||||| | | | |||| |||||||| ||||||| ||||| | |
Sbjct 707 TGCGCAGACGGTGATCA-ACGGA-TTCTTGTCTATGAATACATGCAAAATGGCTCTTTAG 764
Query 485 AAGATCATCTCCTCGA-TCTAACACCGGACCAA-AT-A--CCATTGGATTGGGACACGAG 539
| |||||||| || || | | | | ||| ||| | | || |||||||||||||| ||
Sbjct 765 AGGATCATCTTCTAGAAT-TGGCGC-GGAACAAGAAGAAGCCGTTGGATTGGGACACAAG 822
Query 540 GATTAGAA-TCGCT-CTAGGAGCCGCAA-AGGGTCTTGAATA-CTTGCATGACA-AGGCA 594
|| | || | || | |||||| || | |||| ||||| || || || || | || ||
Sbjct 823 AATGA-AAGTTGCGGC-AGGAGCAGCTAGAGGG-CTTGAGTATCTA-CACGAAACAG-CA 877
Query 595 AATCCTCCAGTGATCTACAGAGATCT-CAAGGCAGCTAATATCCTT-CTAGAC-AGTGAA 651
||||||| || ||||||||||| || |||||| | ||||| || || ||| | |||
Sbjct 878 GATCCTCCTGTTATCTACAGAGA-CTTCAAGGCCTCAAATATA-TTACTTGACGAA-GAA 934
Query 652 TTCAACGCCAA-G-TTATCCGATTTTGGTCTGGCAAAGCTAGGCCCTGTC-GG-GGACAA 707
|||||| |||| | || || ||||| ||| | || ||| | || || | | || ||| |
Sbjct 935 TTCAAC-CCAAAGCTT-TCGGATTTCGGTTTAGCTAAGGTTGGTCC-GACCGGTGGAGAG 991
Query 708 ACAACATGTGTCTTCCAGAGTTATGGGAACTTACGGATATTGTGCTCCAGAGTAT-CAGA 766
|| |||||||| | ||||| |||||||| ||||| |||||||| || |||||| |
Sbjct 992 ACT-CATGTGTCAACGAGAGTGATGGGAACATACGGCTATTGTGCGCCTGAGTATGCTCT 1050
Query 767 GAACCGGTCAGTTAACTACT-AAATCCGATGTTTATAGCTTCGGAGTTGTATTGTTGGAG 825
| | || ||| | ||| | ||||||||||| || ||||||||||| || || ||||||
Sbjct 1051 CA-CAGGACAGCTCACTG-TGAAATCCGATGTATACAGCTTCGGAGTCGTGTTCTTGGAG 1108
Query 826 TTGATAACTGGACGAAGAGTTATTGACACTACCAGACCCAAAC--ATGAACAGAATCT-A 882
|||| || ||| || |||| |||||||| || | ||| || | | |||||||| || |
Sbjct 1109 ATGATCACAGGAAGACGAGTCATTGACACAACAAAACC-AA-CTGAAGAACAGAA-CTTA 1165
Query 883 GTAACTTGGGC-ACAACCGGTGTTCAAAGA-ACCGAGTA-GATTCCCGG-AGTTGGCGGA 938
|| |||||||| | || |||||||||| | ||| | | ||| || | | ||| ||
Sbjct 1166 GTCACTTGGGCGAGT-CCATTGTTCAAAGATAG-GAGAAAG-TTCACGTTAAT-GGCAGA 1221
Query 939 TCCGAGT-CTGGAGGGAGTGT-TCCCGGAGAAAGC-TCTGAATCAAGCAG-TGGCAGTCG 994
||| | | || || ||| || ||| | |||| | || ||||||| | | ||||| |
Sbjct 1222 TCC-ATTGCTTGAAGGAAAGTATCCAATA-AAAGGAT-TGTATCAAGC-GCTTGCAGTAG 1277
Query 995 CAGCAATGTGT-TTACAAGAAGAGGCA 1020
||||||||||| || |||||||| |||
Sbjct 1278 CAGCAATGTGTCTT-CAAGAAGAAGCA 1303
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 61194464355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5