BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340907
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07150.1 | Symbols: | unknown protein; Has 19 Blast hits to... 828 0.0
> AT3G07150.1 | Symbols: | unknown protein; Has 19 Blast hits
to 19 proteins in 8 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 19; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr3:2263806-2264576 REVERSE LENGTH=600
Length=600
Score = 828 bits (448), Expect = 0.0
Identities = 553/600 (92%), Gaps = 21/600 (4%)
Strand=Plus/Plus
Query 1 ATGGCGGGAGACACAGCTCGGAGGAAGATCAAACTTTTTTGTCCCTCGGTATCGAAGATT 60
|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1 ATGGCGGGAGACTCAGGTCGGAGGAAGATCAAACTTTTCTGTCCCTCGGTATCGAAGATT 60
Query 61 GTGGAGTGGGCTGCTTGGAACGACGAGAAACTAGACTTTAGAGCCATAGCCGCAGCGTTT 120
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GTGGAGTGGGTTGCTTGGAACGACGAGAAACTAGACTTTAGAGCCATAGCCGCAGCGTTT 120
Query 121 GGGCTCGAACCATCGACGGTGAAGCTCAATGGTCACTTCATAAGCAGAGGTTTTGATCTA 180
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 GGGCTCGAACCATCAACGGTGAAGCTCAATGGTCACTTCATAAGCAGAGGTTTTGATCTA 180
Query 181 ATCGCCACTTGTGTGACGTGGCAGTCTTTGCTCACTTTCTTCTCGGCTAGAGGCTTGTCT 240
| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 181 GTTGCCACTTGTGTGACGTGGCAGTCTTTGCTCACTTTCTTCTCTGCTAGAGGCTTGTCT 240
Query 241 ACTGGTAATCACGAAGCCGATGCTCTGCTAGTTCACGGCAAGCTCTCTAAACTCGGTACT 300
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 ACTGGAAAACACGAAGCCGATGCTCTGCTAGTTCACGGCAAGCTCTCTAAACTCGGTACT 300
Query 301 AAAAGGGCACACTCTGATCCTC---AGGA----G---G-A-----CTT-----AATCAAA 339
||||| |||| ||| ||||||| |||| | | | ||| |||||||
Sbjct 301 AAAAGAGCACGCTCGGATCCTCTGGAGGACTTCGCCTGCAATGATCTTGGTCTAATCAAA 360
Query 340 ACGAAGAAGTTAAAAGATAAGTGTTCAGTTGAAGAATCACTCATCTCTGGATGCAACAAG 399
||||||||||| ||||||||||| ||||||| ||||||||| ||||||||||||||||||
Sbjct 361 ACGAAGAAGTTGAAAGATAAGTGCTCAGTTGGAGAATCACTGATCTCTGGATGCAACAAG 420
Query 400 AGAAAGCTATTGTCTCAAGATTCTCACTCGCTCAAGAAACTAAAACTCAACATGGATGAT 459
|||||||| |||||| ||||||| ||| | ||||||||||||||||||||||||||||||
Sbjct 421 AGAAAGCTGTTGTCTGAAGATTCACACCCACTCAAGAAACTAAAACTCAACATGGATGAT 480
Query 460 AGTTTTGGAGGGAGCGGTTCTAAAACGCCGTTGAAATGCAGTTTCATAAGTGATAATGGT 519
||||| ||||||||||| ||||||||||| ||||||||||||||||| ||||||||||||
Sbjct 481 AGTTTCGGAGGGAGCGGATCTAAAACGCCATTGAAATGCAGTTTCATGAGTGATAATGGT 540
Query 520 CTGAAGAGGACAAGAGAAGATGATATGATTGCTTCTGCATCTTGTAAGAAGATAAGATGA 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 CTGAAGAGGACAAGAGAAGATGATATGATTGCTTCTGCATCTTGTAAGAAGATAAGATGA 600
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5