BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340916
Length=1875
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fam... 425 6e-118
> AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=3885
Length=3885
Score = 425 bits (230), Expect = 6e-118
Identities = 394/467 (84%), Gaps = 35/467 (7%)
Strand=Plus/Plus
Query 890 ATATAAAAGCTGATGCAGGTGATGATACTGGAAATGGGAACAGTCAGGAGTCTCAAGGTA 949
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| |
Sbjct 1577 ATATAAAAGCTGATGCAGGTGCTGATACTGGAAATGGGAACAGTCAGGACTCTCAAGCT- 1635
Query 950 AAAAATTTGAGGAAGCTGGAGGCATTTGTGTTCAAA-ACCTTCCTCCAAATGCAACCATT 1008
| || | |||| || | |||| ||| | ||| |||||||||||||||||||| ||
Sbjct 1636 -ATAA-CT---GAAGATGCACACATTCGTG-TAAAAGACCTTCCTCCAAATGCAACCGTT 1689
Query 1009 GCCTTGGTTGAGAGGGTATTTAAGCAGTTTGGACAAATTAAAAAGGGACGAATTCAAGTT 1068
|||||||||||||| ||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 1690 GCCTTGGTTGAGAGTGTATTTAAGCAGTTTGGACCAATTAAAAAGGGACGAATTCGAGTT 1749
Query 1069 AGAAACCCTGCTAAGTCGAACTATTGGTATGCTTTTGTGGAGTTTGAGGAAGCAGATGCT 1128
| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1750 ATAAACCCTGCTAATTCGAACTATTGGTATGCTTTTGTGGAGTTTGAGGAAGCAGATGCT 1809
Query 1129 GCCGAGAGGGCAATAAAGGCGTCTCCTCTAAATATTGATGGGTATACAACTGACGTGGAG 1188
||| |||| |||||| ||||||||||||||||| ||||||| | |||||| ||||||||
Sbjct 1810 GCCAAGAGAGCAATACAGGCGTCTCCTCTAAATGTTGATGGCCACACAACTTACGTGGAG 1869
Query 1189 AAGAAGCTACCTTACTATAAAAGTGAGTATGTGGGAGAATCAGGCCGTTACTGTGAAAGC 1248
|||||| ||| |||||| || | | | | | | | | || ||||
Sbjct 1870 CAGAAGCAACCATACTATGAA-G-G--T-T-----A----C------T-A-TG--AAAGT 1905
Query 1249 CCATTCGCTGGACCAGGAAACATACACAGAGGCGAGGGAGTGAGAGGATCACTAGGTAAC 1308
|||| || |||||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 1906 CCATCCGATGGACCAGGAAACATAAAGAGAGGCGAGGGAGTGAGAGGATCACTAGGTAAT 1965
Query 1309 CCCTTTTGTAACCGGCAGAAGATGATGGAGGAAGTGAGAGGAATAGA 1355
||| |||||||| ||||||||||| | ||||||||||||||| |||
Sbjct 1966 CCCATTTGTAACTGGCAGAAGATG--G-AGGAAGTGAGAGGAACAGA 2009
Score = 407 bits (220), Expect = 2e-112
Identities = 329/379 (87%), Gaps = 18/379 (5%)
Strand=Plus/Plus
Query 31 GTGGGGGATGAATTTGCAAGGCAATACTATCAGACCTTGCAAAACTCCCCGGAAAATATC 90
||||||||||| ||||||||||| |||||| | |||||||||||| ||||||| ||| ||
Sbjct 841 GTGGGGGATGAGTTTGCAAGGCAGTACTATAACACCTTGCAAAACGCCCCGGAGAATCTC 900
Query 91 TATCTGCTTTATAAAGACAACAGTAAGATTTCACGGCCTGGACTCGATGGAACGATGCGT 150
||| |||||||||||| || |||| |||||||||||||||||| |||||||||||||||
Sbjct 901 TATAAGCTTTATAAAGATAAGAGTACGATTTCACGGCCTGGACTAGATGGAACGATGCGT 960
Query 151 GTCTTCACTTTATCGGATGTGGATGAGAATGATCTTAAAATG-CAATCTTCTGGTGGTTT 209
||||||||||||||| | | ||| | |||||| || | |||| ||||| ||||
Sbjct 961 GTCTTCACTTTATCG-A-----A--AGA-T---CTTAAA-TGGCGATCTCCTGGTAGTTT 1007
Query 210 TGATTCGGTTGAGGTAACCAGTGTCACGTCCCAAGACTCTCATGAGAAGGGTATTGTCGT 269
|||||||||| || ||||||| ||||||||||||||||||| | || ||||||| ||||
Sbjct 1008 TGATTCGGTTAAGATAACCAGCGTCACGTCCCAAGACTCTCTTAAGCAGGGTATCCTCGT 1067
Query 270 CGCTGTTTATGGCTACTTCACTTTCAACGAGAGACCAGCAAGGAACTTCACACAAAGTTT 329
|| ||||||||||||| ||||||||||||||||||| |||||| ||||||||||| ||||
Sbjct 1068 CGTTGTTTATGGCTACCTCACTTTCAACGAGAGACCTGCAAGGCACTTCACACAA-GTTT 1126
Query 330 -CTTTCTTGCTCCCCAAGAAAAAGGCTACTTTGTTTTG-ACCGACATGTTCAAGTTTGTT 387
|||||||| ||||||||||||||||||| |||||| | ||||||||||||| |||||||
Sbjct 1127 TCTTTCTTGTTCCCCAAGAAAAAGGCTACATTGTTT-GCACCGACATGTTCAGGTTTGTT 1185
Query 388 GATATACCCGAGGCTAATG 406
|||||||||||||| ||||
Sbjct 1186 GATATACCCGAGGCCAATG 1204
Score = 361 bits (195), Expect = 2e-98
Identities = 309/362 (85%), Gaps = 15/362 (4%)
Strand=Plus/Plus
Query 51 GCAATACTATCAGACCTTGCAAAACTCCCCGGAAAATATCTATCT-GCT-TTATAAAGAC 108
||| |||||| | | ||||||||||||||||| | || ||| || ||| ||||||||
Sbjct 2850 GCACTACTATAACAACTTGCAAAACTCCCCGG-AGAT-TCTCCCTGGCTACTATAAAGAT 2907
Query 109 AACAGTAAGATTTCACGGCCTGGACTCGATGGAACGATGCGTGTCTTC-ACTTTATCGGA 167
|||||||||| ||||||||||||| ||||||||||||||| || || || || ||||
Sbjct 2908 GTCAGTAAGATTACACGGCCTGGACTTGATGGAACGATGCGT-TCCTCTACCCTACCGGA 2966
Query 168 TGTGGATGAGAATGATCTTAAAATGCAATCTTCTGGTGGTTTTGATTCGGTTGAGGTAAC 227
| | || | | |||||| | |||| |||| ||||||||||||||||||||||||||||
Sbjct 2967 TAT-AAT-CG-AGGATCTTGATATGCTATCTCCTGGTGGTTTTGATTCGGTTGAGGTAAC 3023
Query 228 CAGTGTCACGTCCCAAGACTCTCATGAGAAGGGTATT-GTCGTCGCTGTTTATGGCTACT 286
|||||||| |||||||||||||||||| ||||||||| | ||| |||||| |||||||||
Sbjct 3024 CAGTGTCATGTCCCAAGACTCTCATGACAAGGGTATTCG-CGTTGCTGTTGATGGCTACT 3082
Query 287 TCACTTTCAACGAGAGACCAGCAAGGAACTTCACACAAAGTTTCT-TTCTTGCTCCCCAA 345
|||||||||||||||| || ||||||||||||||||||| ||| || |||||||||||
Sbjct 3083 TCACTTTCAACGAGAGGCCTGCAAGGAACTTCACACAAAACTTCACTT-TTGCTCCCCAA 3141
Query 346 GAAAAAGGC-TACTTTGTTTTGACCGACATGTTCAAGTTTGTTGATATACCCGAGGCTAA 404
||||||||| | |||||||| ||| ||||||||||||||||||| ||||||||||||||
Sbjct 3142 GAAAAAGGCCT-CTTTGTTTCGACTGACATGTTCAAGTTTGTTGGCATACCCGAGGCTAA 3200
Query 405 TG 406
||
Sbjct 3201 TG 3202
Score = 263 bits (142), Expect = 5e-69
Identities = 202/228 (89%), Gaps = 15/228 (7%)
Strand=Plus/Plus
Query 1383 GAGAGGAGCAGAAGTTTATGACTTGCACAAA-TGGCAAAAGATTATGGATCAATCGGAGG 1441
||||||| |||| |||||||||||||| ||| ||||||||||||||| ||||||||||||
Sbjct 1998 GAGAGGAACAGATGTTTATGACTTGCA-AAACTGGCAAAAGATTATGAATCAATCGGAGG 2056
Query 1442 AGCAGATGAAGTTTCAGGAGGAAGAAGGACGACAACACAATCAAAACAGATATAGAAGCG 1501
|||||||||||||||||||||||||||| |||||| |||||||||||||||||| |||||
Sbjct 2057 AGCAGATGAAGTTTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATACAAGCG 2116
Query 1502 AGGAAGTGAGAGGAACAGAAGGAGTTGTTGGTCTGGAGGCAGAAGA-GAACCAA-AACTG 1559
||||||||||||||||||||||||||| | |||||||| |||||| ||| || || |
Sbjct 2117 AGGAAGTGAGAGGAACAGAAGGAGTTG--G-TCTGGAGGAAGAAGAAGAAG-AAGAA--G 2170
Query 1560 GGAGAAGTTAA-C-GG-AGGAACAGAGGAAGATTCAGGAGGAAGAAGG 1604
|||| || | || |||||||||||||||||||||||||||||||
Sbjct 2171 --AGAACCAAAACTGGGAGGAACAGAGGAAGATTCAGGAGGAAGAAGG 2216
Score = 172 bits (93), Expect = 9e-42
Identities = 199/247 (81%), Gaps = 20/247 (8%)
Strand=Plus/Plus
Query 606 TGCAGCCATTTGTGTGAAAAATCTTCCTCTAAATGCAACCATTGCCTTGGTTAAGAATGC 665
||| || ||||| || |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 3225 TGCCGCAATTTGCGTTAAAAATCTTCCTCTAAATGCAACCATTGCCTTGGTTGAGAATGC 3284
Query 666 ACTT-AAGCAGTTTGGGGAAATTAGAAGAGGTGGAGTTAAAGTTAGAAGCACAAAGTA-C 723
| || ||||||||||| ||||| ||||||||||||||| ||||||||| || |||| | |
Sbjct 3285 A-TTCAAGCAGTTTGGAGAAATCAGAAGAGGTGGAGTTGAAGTTAGAAACA-AAAGGAGC 3342
Query 724 TATGAAGGGAAATATG-CTTATGTGGAGTTTGAGGAAGCAGATGCCGCCAACAGGGCAAT 782
| | |||| ||| ||||||||| |||||| | |||||||| | || |||||
Sbjct 3343 TTTTCT------TATGGCTTC-GTGGAGTTTAAGGAAGAAAATGCCGCCCAGAGAGCAAT 3395
Query 783 AATGGCGTCTCCTCTAA-GTATTGATG-G-GTA-CAGAATTTACTTGGAGAAGAAGCAAC 838
|| ||| |||||| ||| | |||||| | ||| | | ||||| |||||||||||| ||
Sbjct 3396 AAAGGCTTCTCCTGTAACG-ATTGATTTGCGTAGC-G--TTTACGTGGAGAAGAAGCGAC 3451
Query 839 CTTACTA 845
|| ||||
Sbjct 3452 CTGACTA 3458
Score = 121 bits (65), Expect = 3e-26
Identities = 85/95 (89%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 1571 CGGAGGAACAGAGGAAGATTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATA 1630
||||||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2051 CGGAGGAGCAGATGAAGTTTCAGGAGGAAGAAGGGCGACAATACAATCAAAACAGATATA 2110
Query 1631 CAAGGGAGAAAACGAAAGAAACAGGAGGAGTTGGT 1665
|||| ||| || || || ||||| ||||||||||
Sbjct 2111 CAAGCGAGGAAGTGAGAGGAACAGAAGGAGTTGGT 2145
Score = 111 bits (60), Expect = 2e-23
Identities = 68/72 (94%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 1707 GAGTAAGCTTCAGGAGGAAGCGGGACAAACAGAAGTTGTTCATTCTTGGGACTATGAGCA 1766
||||||||||||||||||||||| | ||||| |||||| |||||||||||||||||||||
Sbjct 2709 GAGTAAGCTTCAGGAGGAAGCGGTAGAAACACAAGTTGATCATTCTTGGGACTATGAGCA 2768
Query 1767 GATAATGGAGGA 1778
||||||||||||
Sbjct 2769 GATAATGGAGGA 2780
Score = 100 bits (54), Expect = 4e-20
Identities = 60/63 (95%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 400 GCTAATGATGTCATAGAGGAGAAAGTTCCAGAAACAGAGGAAGCTGCACTGAGAGTTTCT 459
||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||
Sbjct 1219 GCTAATGATGTCATAGAGGAGAAAGTTCCAGAAACGGAGGGAGCTGCTCTGAGAGTTTCT 1278
Query 460 GAA 462
|||
Sbjct 1279 GAA 1281
Score = 84.2 bits (45), Expect = 4e-15
Identities = 57/63 (90%), Gaps = 0/63 (0%)
Strand=Plus/Plus
Query 733 AAATATGCTTATGTGGAGTTTGAGGAAGCAGATGCCGCCAACAGGGCAATAATGGCGTCT 792
|||| ||||| |||||| || ||| ||||||||| |||||||||||||||||||||||||
Sbjct 2350 AAATTTGCTTTTGTGGACTTCGAGAAAGCAGATGTCGCCAACAGGGCAATAATGGCGTCT 2409
Query 793 CCT 795
|||
Sbjct 2410 CCT 2412
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 92820807705
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5