BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340917
Length=861
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) fam... 1107 0.0
> AT3G07250.1 | Symbols: | nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
| chr3:2300579-2308305 REVERSE LENGTH=3885
Length=3885
Score = 1107 bits (599), Expect = 0.0
Identities = 766/843 (91%), Gaps = 26/843 (3%)
Strand=Plus/Plus
Query 10 AAGTTTGGAGAAGATGAGAATGTGGA---C--G-TCGAGCTAGAGCTATGTCTTTCCCTG 63
||||||| |||||||||||||||||| | | ||||||| ||||||||||||||||||
Sbjct 10 AAGTTTGTAGAAGATGAGAATGTGGAGGTCGAGCTCGAGCTCGAGCTATGTCTTTCCCTG 69
Query 64 GGAGGTCCTTTCAAGAAAACAGAGAAATCTAAACCAATAGGACCATCTGAA-TCCGTCGA 122
|||||||||||||||||||| |||||||||||| || | |||| |||| || ||||||
Sbjct 70 GGAGGTCCTTTCAAGAAAACGGAGAAATCTAAAACATTTGGACAATCT-AACGCCGTCGG 128
Query 123 ATGCGCA-AAGGGTACCGGCGTTAATCTTGA-GG-ATGAAACGACGAATGTGACGAGGAT 179
|| || | |||| || ||||||||||||||| || | | |||||||||||||||||||||
Sbjct 129 ATTCG-AGAAGGATAACGGCGTTAATCTTGACGGCA-G-AACGACGAATGTGACGAGGAT 185
Query 180 Aaaggaaacgcggaagaagcgggaggcgaagcagcagcagagaagcggagaagaagaaga 239
||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 186 AAAGGAAACACGGAAGAAGCGGGAGGCGAAGCAGCAGCAGAGAAGCGGAGAAGAAGGAGA 245
Query 240 gtgcaagaggatgagaaCAGAATGTAACGGAGTTACTAACGGCGAGGATATGGATTTGAG 299
|||||||||||| |||||||||| ||||||||||| ||||||||| ||||||||||||||
Sbjct 246 GTGCAAGAGGATCAGAACAGAATATAACGGAGTTAGTAACGGCGATGATATGGATTTGAG 305
Query 300 CTTTAGCAAAATGGGTAACGGTTACGGGTCGGGTCAACTTAAGGAAAACCGTAAAGACGT 359
|| || ||| ||| ||||||||||||||||||||| ||| ||||||| | ||||||||||
Sbjct 306 CTCTATCAACATGTGTAACGGTTACGGGTCGGGTCGACTCAAGGAAAGCAGTAAAGACGT 365
Query 360 TACGATTGGGTCACCCATTTGCACCTCCTCCGACGTATCCGATCCCAGCAGCTCTTCTCG 419
||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||
Sbjct 366 TACGATTGGGTCACCCATTTGCACCTCCTCCTCCGTATCCGATCCTAGCAGCTCTTCTCG 425
Query 420 CCACGAAGGTGGAAGTGGCGATATTGGGGCACAATCTGGCCAAACCAAACCGGTTGGACC 479
||| ||||||||||||||||| |||||||||||||||||||||||||||| |||| || |
Sbjct 426 CCAAGAAGGTGGAAGTGGCGACATTGGGGCACAATCTGGCCAAACCAAACAGGTTAGATC 485
Query 480 TCCGGTTAACAACATTGGGATTGGTACAGAGCAAACCGTGCATAGCACAGACGGTTCAAA 539
|||||||||||||||| || |||||||||||||||||||||| |||||||||||||||
Sbjct 486 TCCGGTTAACAACATTCTGACCGGTACAGAGCAAACCGTGCATAACACAGACGGTTCAAA 545
Query 540 AGATGCGGTGGTAGTGGAGACCCAAGCATTGTCCAACTCT---GTAACAAAAAAGACTGG 596
||| |||| || | |||||| || |||||||||| ||||| ||| ||| |||
Sbjct 546 AGACGCGG----AG---A--CCCAAGAATGGTCCAACTCTTCTGTAACCAAAGAGAGTGG 596
Query 597 GAAGCCACCAAAACCGCATACCAACAGTAACGGTAACGGCAGTTTGCTTCCGTTTGCTCA 656
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 597 GAAGCCGCCAAAACCGCATACCAACAGTAACGGTAACGGCAGTTTGCTTCCGTTTGCTCA 656
Query 657 GATGCCTTGCGTGACTAGCACCGGCAACGGTCCCGAGGGCAAAACCGTAAATGGCTTTCT 716
|||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||
Sbjct 657 GATGCCTTGCGTGACTAGCACCGGTAACGGTCCCGAGGGCAAAACCGTAAATGGTTTTCT 716
Query 717 ATACCGGTACTCAAAATCAGAGATCAGTATAATCTGTGTCTGCCATGGAACGTCTTTCTC 776
|||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 717 ATACCGTTACTCAAAATCAGAGATCAGTATAATCTGCGTCTGCCATGGAACGTCTTTCTC 776
Query 777 GCCGGCTGAGTTCATCGTTCACGCCGGTGGGACTAATGTGTCACATCCGTTGAGGCATAT 836
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 777 GCCGGCTGAGTTCATCGTTCACGCCGGTGGGACTAATGTGTCGCATCCGTTGAGGCATAT 836
Query 837 AAC 839
|||
Sbjct 837 AAC 839
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 41995746892
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5