BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg340977
Length=519
Score E
Sequences producing significant alignments: (Bits) Value
AT3G07920.1 | Symbols: | Translation initiation factor IF2/IF5... 647 0.0
AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translat... 300 1e-80
> AT3G07920.1 | Symbols: | Translation initiation factor IF2/IF5
| chr3:2524420-2526229 REVERSE LENGTH=862
Length=862
Score = 647 bits (350), Expect = 0.0
Identities = 434/474 (92%), Gaps = 8/474 (2%)
Strand=Plus/Plus
Query 1 ATGGCTGATGAAAGTAATGAGATCAAGGAAGAAGTGAAGCATGAT---CAAGAAATTCTT 57
|||||||||||||||||||||| |||| ||||||||||| ||||| ||||||||||||
Sbjct 1 ATGGCTGATGAAAGTAATGAGAACAAGAAAGAAGTGAAGGATGATGAGCAAGAAATTCTT 60
Query 58 CGTAGGGTCTTTAATATCCTGCGTGAAAATAGTCCGGAGCTTGTTGGAGTTTGGCTTCTT 117
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 61 CGTAGGGTCTTTAATATCCTGCGTGAAAATAGTCCGGAGCTTGTTGGAATTTGGCTTCTT 120
Query 118 ACAATTATATGGCCACCACAAGTTCTTCGTGAAGGGACAGAGACAGGGACACAGAAGACA 177
|||||||||||||||||||||||||||||||||| ||||| || ||| ||| ||||||||
Sbjct 121 ACAATTATATGGCCACCACAAGTTCTTCGTGAAGAGACAGCGAAAGGCACAAAGAAGACA 180
Query 178 GTCTTTGTCAACTTTATGGACTATTGCAAGACCATGCGTCGACCCCCAGATCATGTTATG 237
|||||||||||||||||||||||||||||||| |||| |||| ||| ||||||||||||
Sbjct 181 GTCTTTGTCAACTTTATGGACTATTGCAAGACGATGCATCGAAACCCTGATCATGTTATG 240
Query 238 GC-TATCTTGCTTGGTGAGATGGGTACTAGGGGTACACTTGATGGGCAGCAAAGGTTGGT 296
|| | ||||||||| |||| ||||||||||||||| |||||||| ||||||||||||||
Sbjct 241 GCGT-TCTTGCTTGCTGAGCTGGGTACTAGGGGTAAACTTGATGATCAGCAAAGGTTGGT 299
Query 297 TGTTAGGGGGAGATTCACACAGAAGCACTTTGAATCGTTATTACGACGATATATCCTTGA 356
||||||||||||||| ||||||| | |||||||||||||||||||| |||||||||||||
Sbjct 300 TGTTAGGGGGAGATTTACACAGAGGGACTTTGAATCGTTATTACGAGGATATATCCTTGA 359
Query 357 CTACGTCATGTGC-TCTGGTTGCAAGAGCACAGACGCAATTATTTCAAGGGAGAATCGTC 415
||||||||||||| | | ||||||||||||||| |||||| |||||| |||||||||||
Sbjct 360 CTACGTCATGTGCAT-TCCTTGCAAGAGCACAGAGGCAATTCTTTCAAAGGAGAATCGTC 418
Query 416 TCTCCTTTTTGAGATGTGAAAAGTGTGGATCAGAACGACCAGTGGGCGCCAATC 469
||| |||||||||||||| |||||||||||||| |||||| |||| ||||||||
Sbjct 419 TCTTCTTTTTGAGATGTGGAAAGTGTGGATCAGGACGACCTGTGG-CGCCAATC 471
> AT5G20920.1 | Symbols: EIF2 BETA, EMB1401 | eukaryotic translation
initiation factor 2 beta subunit | chr5:7094718-7097116
REVERSE LENGTH=1196
Length=1196
Score = 300 bits (162), Expect = 1e-80
Identities = 336/416 (81%), Gaps = 28/416 (7%)
Strand=Plus/Plus
Query 53 TTCTTCGTAGGGTCTTTAATATCCTGCGTGAAAATAGTCCGGAGCTTGTTGGAGTTTGGC 112
||||| |||| |||||||| || || |||||||||| ||||||||||| ||||| | |||
Sbjct 475 TTCTTGGTAGAGTCTTTAACATTCTCCGTGAAAATAATCCGGAGCTTGCTGGAGATAGGC 534
Query 113 TTCTTACAATTAT-ATGGCCACCACAAGTTCTTCGTGAAGGGACAGAGACAGGGACACAG 171
|| |||| |||| | |||| || ||||||||||||| | || | ||| | | ||
Sbjct 535 GTCGTACAGTTATGA-GGCCTCCTCAAGTTCTTCGTG-A-GG---G-GAC----A-A-AG 581
Query 172 AAGACAGTCTTTGTCAACTTTATGGA-CTATTGCAAGACCATGCGTCGACCCCCAGATCA 230
||||| |||||||||||||| ||||| || ||||||||| |||| ||| | ||||||||
Sbjct 582 AAGACTGTCTTTGTCAACTTCATGGACCT-TTGCAAGACGATGCATCGTCAACCAGATCA 640
Query 231 TGTTATGGCTAT-CTTGCTTGGTGAGATGGGTACTAGGGGTACACTTGATGGGCAGCAAA 289
|||||| || || |||||||| |||| |||||||||| ||| | ||||||||||||||||
Sbjct 641 TGTTAT-GCAATACTTGCTTGCTGAGTTGGGTACTAGTGGTTCGCTTGATGGGCAGCAAA 699
Query 290 GGTTGGTTGTTAGGGGGAGATTCACACAGAAGCACTTTGAATCG--TTATTACGACGATA 347
|||||||||||| ||| || || ||| ||| | |||||| | || || || |||||
Sbjct 700 GGTTGGTTGTTAAGGGAAGGTTTGCACCTAAGAATTTTGAAG-GAATT-TTGCGGCGATA 757
Query 348 TATC-CTTGACTACGTCATGTGCTCT-GGTTGCAAGAGCACAGACGCAATTATTTC-AAG 404
|||| || ||||||||||| ||| || |||||||||||| ||||| | ||| | || |||
Sbjct 758 TATCACT-GACTACGTCATTTGC-CTTGGTTGCAAGAGCCCAGACACCATTCTCTCCAAG 815
Query 405 GGAGAATCGTCTCTCCTTTTTGAGATGTGAAAAGTGTGGATCAGAACGACCAGTGG 460
| |||| ||||||| |||| |||||||||||||||||||||| ||||| | ||||
Sbjct 816 G-AGAACCGTCTCTTCTTTCTGAGATGTGAAAAGTGTGGATCTCAACGATCTGTGG 870
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24815668618
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5