BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg341028

Length=570
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G07950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecu...   183    1e-45


> AT5G07950.1 | Symbols:  | unknown protein; FUNCTIONS IN: molecular_function 
unknown; INVOLVED IN: biological_process unknown; 
LOCATED IN: chloroplast; EXPRESSED IN: 20 plant structures; 
EXPRESSED DURING: 9 growth stages; Has 30201 Blast hits 
to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; 
Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 
0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:2540284-2542136 
REVERSE LENGTH=1247
Length=1247

 Score =  183 bits (99),  Expect = 1e-45
 Identities = 109/114 (96%), Gaps = 0/114 (0%)
 Strand=Plus/Plus

Query  236  AGAAGATGGCTGAGGAGTTTGTGGAGATGTTCATACGCGAAGTAATGATAAAGGGATTGC  295
            ||||||||||||||||| ||||||||||||||| ||||||||||||| ||||| ||||||
Sbjct  628  AGAAGATGGCTGAGGAGCTTGTGGAGATGTTCAAACGCGAAGTAATGCTAAAGAGATTGC  687

Query  296  TCATAATGGAACTTATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA  349
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct  688  TCATAATGGAACTGATCTCTTTAAGCACTGAAGTTCCTCAACCCATCAACAACA  741


 Score =  134 bits (72),  Expect = 1e-30
 Identities = 84/90 (93%), Gaps = 0/90 (0%)
 Strand=Plus/Plus

Query  353  AGCCAGTTCTCCCTAGAGTGAAAGAAAATAATTTCGGTATTTCTTCTATATCACATACCA  412
            ||||||||||||| |||||||||||  ||||| |||||| ||||||||||||||||||||
Sbjct  817  AGCCAGTTCTCCCCAGAGTGAAAGATTATAATATCGGTAGTTCTTCTATATCACATACCA  876

Query  413  ACCAGCCAACCGTAGAAATTTTGCAGATTT  442
            |||||||||||| |||||||||||||||||
Sbjct  877  ACCAGCCAACCGCAGAAATTTTGCAGATTT  906



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 27377610115


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5