BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341089
Length=1302
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like s... 854 0.0
AT3G09500.1 | Symbols: | Ribosomal L29 family protein | chr3:... 608 4e-173
AT5G02610.2 | Symbols: | Ribosomal L29 family protein | chr5:... 292 4e-78
> AT3G09490.1 | Symbols: | Tetratricopeptide repeat (TPR)-like
superfamily protein | chr3:2915559-2916673 FORWARD LENGTH=1115
Length=1115
Score = 854 bits (462), Expect = 0.0
Identities = 647/732 (88%), Gaps = 29/732 (4%)
Strand=Plus/Plus
Query 117 CCTCACCGCAGCCGCAGCTCTGTTCTCAGCATCCTTTTACTTCGTCTACAAACCCGCCGC 176
||||||||||||||||||||||||||||||||| |||||||||||| |||||| ||||||
Sbjct 290 CCTCACCGCAGCCGCAGCTCTGTTCTCAGCATCGTTTTACTTCGTCAACAAACGCGCCGC 349
Query 177 GACGACTCCGGTTGCTGTGGT--AGA-G------GAG-A-C-TCTCGAGATACTATCAAA 224
|| |||||| ||||||||||| ||| | ||| | | ||||||| || ||||||
Sbjct 350 GATGACTCCAGTTGCTGTGGTAGAGACGACACTCGAGAAGCACCTCGAGACACAATCAAA 409
Query 225 CGATGTGAAAGCTTTATCATTGCTGACGGAGATCAAATTTAAGTCCGATAGACATGAGCA 284
||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||
Sbjct 410 CGATGTGAATGCTTTATCATTGCTGACGGAAATCAAATTTAAGTCCGATAAACATGAGCA 469
Query 285 GGCAATAGAAGTTCTGGACCGTCTGATCGAGATCGAGCCCGATGAACGAAAATGGCCGGC 344
||| || | | |||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 470 GGCGATTGTATTTCTGGACCGTCTGATCGAGATCGAGCCATATGAACGAAAATGGCCGGC 529
Query 345 TATGAAGGCTAGGATTCTCTCATACCACGGAAAAAGCGAATTGGCAATCGAAGCTTTCGA 404
|||||||||| ||||||||||||||||||| ||||| |||| |||||||||||||||||
Sbjct 530 TATGAAGGCTCGGATTCTCTCATACCACGGGAAAAGTGAATCAGCAATCGAAGCTTTCGA 589
Query 405 -GAGGATTCTTGAGAAGGACCCGATACGTGTTGACGCTTATCATTACTTGGTGATGGAGT 463
|| |||||| || ||||| |||||||| || || |||||||||||||||||||||||||
Sbjct 590 GGA-GATTCTCGAAAAGGATCCGATACGCGTCGATGCTTATCATTACTTGGTGATGGAGT 648
Query 464 ATTACAACTCTAAACCCAAATTAACAGAGCTAGAGAAGAGAATCAACAAAGTGATTCGAA 523
|||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||||
Sbjct 649 ATTACAACTCTAAACCTAAATTAACAGAGATAGAGAAGAGGATCAACAAAGTGATTCGAA 708
Query 524 GATGCAAGAAGGAGAAGAAGGCGAAAGAGATT-TGTGGTTTCAGAATGTTGATCGCGCAG 582
|||||||||||||||||||| ||||||||||| | |||||||||||||||||||| |||
Sbjct 709 GATGCAAGAAGGAGAAGAAGACGAAAGAGATTCTC-GGTTTCAGAATGTTGATCGCACAG 767
Query 583 ATCAAGTTTATCCAAGGAAACTCACTTGAAGCCATTCGGATTTGTGAAGAGTTAGTGAAA 642
|| | |||||| ||||||| ||| ||||||| |||||||||||||||||| |||||||
Sbjct 768 ATTAGGTTTATTGAAGGAAAATCAGTTGAAGCAATTCGGATTTGTGAAGAGCTAGTGAAG 827
Query 643 GATGATCCAGAA-GATTTCACTATATATCTGTTTCAAGGAATCGTGTATATATTGATGAA 701
|| |||||| || ||||||||||||||| ||||||||||| ||||||||| |||||||||
Sbjct 828 GAAGATCCA-AATGATTTCACTATATATTTGTTTCAAGGAGTCGTGTATACATTGATGAA 886
Query 702 TAAGGAAGAGGAAGCTGCGAAGCAATTCGAGCAAGTTGCAAGGGTTATGCCGATGAATCA 761
||||| ||||||||||||||||||||| ||||| ||||| |||||||| || | ||||||
Sbjct 887 TAAGGGAGAGGAAGCTGCGAAGCAATTTGAGCATGTTGCTAGGGTTATACCAAGGAATCA 946
Query 762 TCCGTCCAGAGAGACTGC-G--A---CCAC---CTCAAA-GCAATGGAGAGTCATCGTAG 811
||||| ||||||||||| | | |||| |||||| | ||||||||||||||||||
Sbjct 947 CCCGTCTAGAGAGACTGCCGCGAGGACCACGAACTCAAATG-AATGGAGAGTCATCGTAG 1005
Query 812 CTTACGATAATG 823
||||||||||||
Sbjct 1006 CTTACGATAATG 1017
> AT3G09500.1 | Symbols: | Ribosomal L29 family protein | chr3:2916952-2918108
FORWARD LENGTH=680
Length=680
Score = 608 bits (329), Expect = 4e-173
Identities = 355/368 (96%), Gaps = 0/368 (0%)
Strand=Plus/Plus
Query 935 CGAGGATTAAGGTTCACGAGTTGAGGGAAAAGTCGAAGAGCGATCTTCAAAACCAGCTTA 994
||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||| |
Sbjct 100 CGAGGATTAAGGTTCACGAATTGAGGGAGAAGTCGAAGAGCGATCTTCAAAACCAGCTGA 159
Query 995 AGGAACTCAAAGCTGAGCTCGCTCTCCTTCGTGTCGCCAAAGTCACCGGAGGTGCTCCTA 1054
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |
Sbjct 160 AGGAACTCAAAGCTGAGCTCGCTCTCCTCCGTGTCGCTAAAGTCACCGGAGGTGCTCCAA 219
Query 1055 ACAAGCTCTCTAAAATCAAGGTGGTGCGTAAATCCATTGCTCAGGTTTTGACAGTGTCCT 1114
|||||||||||||||||||||| |||||||||||||| |||||||||||||||||||| |
Sbjct 220 ACAAGCTCTCTAAAATCAAGGTCGTGCGTAAATCCATAGCTCAGGTTTTGACAGTGTCTT 279
Query 1115 CTCAGAAGCAGAAGTCTGCTCTAAGAGAAGCATACAAGAACAAGAAGTTTCTTCCTCTTG 1174
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 280 CTCAGAAGCAGAAGTCTGCTCTAAGAGAAGCATACAAGAACAAGAAGTTGCTTCCTCTTG 339
Query 1175 ATCTCCGTCCCAAGAAGACCCGTGCTATCCGCAGACGCCTCACCAAACACCAGGCCTCTT 1234
|||||||||||||||||||||||||||| || |||||||||||||||||||||||||| |
Sbjct 340 ATCTCCGTCCCAAGAAGACCCGTGCTATTCGTAGACGCCTCACCAAACACCAGGCCTCGT 399
Query 1235 TGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAATAAGGAAGTACGCTATCA 1294
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 400 TGAAGACAGAGCGTGAGAAGAAGAAGGAGATGTATTTCCCAATAAGGAAGTACGCTATCA 459
Query 1295 AAGTTTAA 1302
||||||||
Sbjct 460 AAGTTTAA 467
> AT5G02610.2 | Symbols: | Ribosomal L29 family protein | chr5:587508-588800
FORWARD LENGTH=797
Length=797
Score = 292 bits (158), Expect = 4e-78
Identities = 208/232 (90%), Gaps = 4/232 (2%)
Strand=Plus/Plus
Query 1069 ATCAAGGTGGTGCGTAAATCCATTGCTCAGGTTTTGACAGTG-TCCTCTCAGAAGCAGAA 1127
|||||||| ||| | ||||||||||||||||| ||||||||| | ||| |||||||||||
Sbjct 311 ATCAAGGTTGTGAGGAAATCCATTGCTCAGGTGTTGACAGTGAT-CTCCCAGAAGCAGAA 369
Query 1128 GTCTGCTCTAAGAGAAGCATACAAGAACAAGAAGTTTCTT-CCTCTTGATCTCCGTCCCA 1186
|||||| ||||||| |||||||||||||||||| |||| |||||||||||||||||||
Sbjct 370 ATCTGCTTTAAGAGAGGCATACAAGAACAAGAAG-CTCTTGCCTCTTGATCTCCGTCCCA 428
Query 1187 AGAAGACCCGTGCTATCCGCAGACGCCTCACCAAACACCAGGCCTCTTTGAAGACAGAGC 1246
|||| || || |||||||| ||||| |||||||| || ||||| || |||||||||||||
Sbjct 429 AGAAAACACGAGCTATCCGTAGACGTCTCACCAAGCATCAGGCTTCGTTGAAGACAGAGC 488
Query 1247 GTGAGAAGAAGAAGGAGATGTATTTCCCAATAAGGAAGTACGCTATCAAAGT 1298
||||||||||||||||||||||||||||| | ||||||||||||||||||||
Sbjct 489 GTGAGAAGAAGAAGGAGATGTATTTCCCAGTGAGGAAGTACGCTATCAAAGT 540
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64055895420
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5