BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg341099
Length=978
Score E
Sequences producing significant alignments: (Bits) Value
AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosp... 433 2e-120
AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosp... 294 9e-79
> AT3G09620.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr3:2949152-2952205
REVERSE LENGTH=2970
Length=2970
Score = 433 bits (234), Expect = 2e-120
Identities = 303/334 (91%), Gaps = 14/334 (4%)
Strand=Plus/Plus
Query 647 TGCTAACGTGCAACACTACCTTGCAAAGATTCAAGC---T-C-A-A--T----ACTATGA 694
||||||||||||||| |||||||||||||||||||| | | | | | |||||||
Sbjct 2613 TGCTAACGTGCAACAGTACCTTGCAAAGATTCAAGCTGATGCGATACCTGAACACTATGA 2672
Query 695 AGCAGAGTTGGAAATCAATGATTTCCCACAGAATGCTCAGTGGAAAGTTACCCACAAAGA 754
|||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 2673 AGCAGAATTGGAAATCAATGATTTCCCACAGAATGCTCGGTGGAAAGTTACCCACAAAGA 2732
Query 755 AACGCTTGAACCAATATGAGAGTAGAGTAGAGCTTCCATTACGA--AGAGGTAAGTTTTA 812
|||||| | |||||||| ||||| |||| ||||||||||||| | ||||||||||||||
Sbjct 2733 AACGCTGGGACCAATATCAGAGTGGAGTGGAGCTTCCATTACCACTAGAGGTAAGTTTTA 2792
Query 813 TGAGGCAGGACGTATCACGGGACCTGGGGAACGCAAGCTCTATTTGTTCGTTGAAGGGCC 872
|||||||||||||||| ||||||||| |||||||||||||||||||||||| ||||||||
Sbjct 2793 TGAGGCAGGACGTATCCCGGGACCTGAGGAACGCAAGCTCTATTTGTTCGTCGAAGGGCC 2852
Query 873 TACCGAAAAATCTGTTAAGACAGCGAAAGCTGAACTCAAGCGTGTTGTTGAAGACGTAAC 932
|||||||| ||||||||||||||||||||||||||||||||||||| |||||||| ||||
Sbjct 2853 TACCGAAATATCTGTTAAGACAGCGAAAGCTGAACTCAAGCGTGTTCTTGAAGACATAAC 2912
Query 933 TAATCAAGCCTTCTCCCTTCCTGGAGGAGCACAA 966
||| ||| ||||||||||||||||||||||||||
Sbjct 2913 TAACCAAACCTTCTCCCTTCCTGGAGGAGCACAA 2946
Score = 379 bits (205), Expect = 2e-104
Identities = 240/256 (94%), Gaps = 5/256 (2%)
Strand=Plus/Plus
Query 395 GTGGCTTTAAATTCAACGAAGAGGAGGATGAAGTTAGGAAAGCTGCAAAGAAAGCACAAG 454
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 2309 GTGGCTTTAAATTCAACGAAGAGGAGGATGAAGTTAGGAAAGCAGCAAAGAAAGCACAAG 2368
Query 455 CAAAGGAGTATGGCTTTGAGGAAGAGAAGTCTGACTCAGAAGATGAGAATGATGTAGTAA 514
| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 2369 CGAAGGAGTATGGCTTTGAAGAAGAGAAGTCTGACTCAGAAGATGAGAATGATGTAGTAA 2428
Query 515 CAAAGGCTGGTGGTGATATCTCACAGCAGCAGATTACTCTTGCTCAGATAGCCGCCATTG 574
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2429 GAAAGGCTGGTGGTGATATCTCACAGCAGCAGATTACTCTTGCTCAGATAGCCGCCATTG 2488
Query 575 CTGCTCCTGCAA--AAG-CTCCTGTGACTGCTAACCAATTGCTGCCAAATGCTG-TCGGG 630
|| || |||| ||| ||||||||||||||||||||||||| ||||||| || | |||
Sbjct 2489 CTTCTGCTGCTTCTAAGGCTCCTGTGACTGCTAACCAATTGCTTCCAAATGGTGGT-GGG 2547
Query 631 CTAGCCACCGAGCCAG 646
|||||||| |||||||
Sbjct 2548 CTAGCCACTGAGCCAG 2563
Score = 329 bits (178), Expect = 2e-89
Identities = 188/193 (97%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 187 CTAGATGTGAAAGAGCTTGAGTTGGTTGTAAACTTCGATGCACCAAACCACTATGAAGAC 246
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 2032 CTAGATGTGAAAGAGCTCGAGTTGGTTGTAAACTTCGATGCACCAAACCACTATGAAGAC 2091
Query 247 TATGTGCATCGTGTTGGCAGGACAGGTAGGGCAGGACGGAAAGGCTGTGCTGTAACATTT 306
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 2092 TATGTGCATCGTGTTGGTAGGACAGGTAGGGCAGGGCGGAAAGGCTGTGCTGTAACATTT 2151
Query 307 CTCTCTGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGAACTATCTGAG 366
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2152 ATCTCTGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGAACTATCTGAG 2211
Query 367 GAGCCAGTTCCTG 379
||||||||||||
Sbjct 2212 CAGCCAGTTCCTG 2224
> AT1G20920.1 | Symbols: | P-loop containing nucleoside triphosphate
hydrolases superfamily protein | chr1:7285114-7289778
FORWARD LENGTH=4430
Length=4430
Score = 294 bits (159), Expect = 9e-79
Identities = 196/213 (92%), Gaps = 5/213 (2%)
Strand=Plus/Plus
Query 395 GTGGCTTTAAATTCAACGAAGAGGAGGATGAAGTTAGGAAAGCTGCAAAGAAAGCACAAG 454
|||||||||||||||||||||||||||| |||||||| ||||| ||||||||||||||||
Sbjct 2944 GTGGCTTTAAATTCAACGAAGAGGAGGAAGAAGTTAGAAAAGCAGCAAAGAAAGCACAAG 3003
Query 455 CAAAGGAGTATGGCTTTGAGGAAGAGAAGTCTGACTCAGAAGATGAGAATGATGTAGTAA 514
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 3004 CAAAGGAGTATGGCTTTGAGGAAGACAAGTCTGACTCAGAAGATGAGAATGATGTAGTAA 3063
Query 515 CAAAGGC---TGGTGGTGATATCTCACAGCAGCAGATTACTCTTGCTCAGATAGCCGCCA 571
|||||| ||||||||| ||||||||||||||| |||| ||||||||||||||||||
Sbjct 3064 GAAAGGCAGGTGGTGGTGAGATCTCACAGCAGCAGGCTACTTTTGCTCAGATAGCCGCCA 3123
Query 572 TTGCTGCTCCTGCAAAAGCTCCTG-TGACTGCT 603
|||||||| |||| |||||| ||| || |||||
Sbjct 3124 TTGCTGCTGCTGCCAAAGCTGCTGCTG-CTGCT 3155
Score = 276 bits (149), Expect = 3e-73
Identities = 185/203 (91%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 177 TGCGAGGTGCCTAGATGTGAAAGAGCTTGAGTTGGTTGTAAACTTCGATGCACCAAACCA 236
||| ||| | ||||||||||||||||||||||||||||||||||| ||||| || |||||
Sbjct 2657 TGCTAGGGGTCTAGATGTGAAAGAGCTTGAGTTGGTTGTAAACTTTGATGCGCCGAACCA 2716
Query 237 CTATGAAGACTATGTGCATCGTGTTGGCAGGACAGGTAGGGCAGGACGGAAAGGCTGTGC 296
||||||||| ||||||||||| |||||||||||||| |||||||| || || ||||||||
Sbjct 2717 CTATGAAGATTATGTGCATCGCGTTGGCAGGACAGGCAGGGCAGGGCGTAAGGGCTGTGC 2776
Query 297 TGTAACATTTCTCTCTGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGA 356
||| |||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2777 TGTGACATTTATCTCCGAGGATGATGCAAAATATGCACCAGATTTAGTCAAGGCCCTGGA 2836
Query 357 ACTATCTGAGGAGCCAGTTCCTG 379
|| |||||| ||||||||||||
Sbjct 2837 GCTTTCTGAGCAGCCAGTTCCTG 2859
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47873142091
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5